BAC Information

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BAC

Clone NameB6Ng01-088F16
Chromosome16 (Build37)9 (Build37)
Map Location 15,337,903 - 15,338,603121,050,409 - 121,051,428
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneAbcc1, Gm1758, Snai2, Efcab1, LOC100042737, LOC665653, LOC385748, LOC100042743
Downstream geneLOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088F16.bB6Ng01-088F16.g
ACCDH901227DH901228
length1,1371,010
definitionDH901227|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F16, 5' end.DH901228|Mus musculus domesticus DNA, BAC clone: B6Ng01-088F16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,337,903 - 15,338,603)(121,050,409 - 121,051,428)
sequence
gaattcagtagctatgttgagcacccagggctagacgatgggctgatttc
attctggatagcaacgagtgaatcccggtgtctccctgctgagagccaca
ccttcacagtcaagatggaaaacagtattatttacagaaggaattgacag
ggctgtggataaaagagccaagttcatacctccatcaacggtgctgggga
aagagctgagccagtgaggatcttctcttaccaacgaaagaatgaggtca
ggaccctgagtccagtccaaagaggaccaacatggccacttttgctagca
atcccagcttgagaggtagagacatacagtctctctctctctctctgtct
ctctccttctccttcccctccctcttcctttccctctccctctccctctg
tctctccctttctctcttgctcgatctcccccctctgaccactgtggtgc
atcatacatatagtttgactgcccatgttgtgtctattgatgtactgttc
caaaaaagagaatatgtacatctacatatagccatgaaattgttggggct
caccacctaagggacaacaacacacatagtggggaagacctgcagcagcc
atcaggaacataatacaaaataccatgaaaggaatgggataatccattag
aaagtactaagttacatagaactagggctagaacaaatgaatcaaattca
actgcattgataaggatcataaatatgaatggagcatagtctaagtttga
agaaagagagagtgacattataaaggtcagaatagatgtaagtatagggg
ctatatttgtgagcccagctggattcaagacaaatagaataaaagaaaaa
tgatggtaaatatatcttacttaatgaacactcataaaaaatctgaaatc
actataaaatcaaacaaattaaagtttaaaacaaaataatatttttagag
ataaataacattttataatataagagagtagatttaccaaagttataaca
tatttgaacagtctgagagcttcaagaagtgactaacattgatgttatga
aggacattaccgaccaggcctttaaagaagctgggatgatgggcgagaag
ctctgcttctgaaataaaacatactagagaaggaaag
gaattctttcttcatccggcgtctgtccccttgtgattgaccacgtgtcc
actgccactgtgctctgttttagccatgaatgtcactgtgggcacagctg
tgggtgcaacactgggcctcatgtccaccacaggacccaaatgtggagtg
gcttggagacactagcatggtcaacccgtgcccaggtctcttgctggctg
cacagctcagcgctggctggctttcccttgtgctttatgcagtgggcgtt
ggcttcaccaagagagtaatctgtgcgagtgctatgctcatagccagatg
ttggcatgtaccaatctgtcactccctaacatcgggccgtctgaggaggg
agactgaggcgtgacgggtggtttcgtttctcaggtatgagcacatcctc
atggagcctgaccccgttcctgcctatgcgctgaagctgctcgtcgccat
gacggaacacaaccccgctttcaccaggtactgggaggccagcgttgtag
ctgccaaggggcagggtcactgttcaatctcccactttgagtcgctgaca
ctgtgttggcccaagttcacatgttttaaccccttacttgagtttgcacc
ccatggaatgggtgatacttcaaactgaggaagtgtggagttagggagct
agcccggaggcctgagttagattctcacaagtcacacaatgcttgggtaa
gcagtgtgagcatctgtagttgctgcattcctagagacaggagaatcctc
agatgccagcaggccagctaactagaacatagagaccttgcttcgaaaca
ggcaacagaagctcggaccaacagacaacagatgacaacagatgttatct
atttatgactgacatgtgtggccttgtgtgagcacactggcaccccacaa
attgaatacaaaacatgtctgtcctacactacagcctgaatgataaacac
tttaagggaaaaaccctcacccttaccatatttatgtgtgtatgacgtgt
gacgagtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_15337903_15338603
seq2: B6Ng01-088F16.b_476_1165 (reverse)

seq1  TGTTTTATTTCCAGGAGCTGAAGCTTCTCGGCCTATC-TCCCAGGCTTC-  48
      |||||||||| ||| ||| | |||||||| ||| ||| ||||| ||||| 
seq2  TGTTTTATTT-CAGAAGCAG-AGCTTCTC-GCCCATCATCCCA-GCTTCT  46

seq1  TTAAAGGCCTTGTCGGTAATGTGCCTTTAATAACATCAATGTTAGTCATC  98
      |||||||||| |||||||||||  | || ||||||||||||||||||| |
seq2  TTAAAGGCCTGGTCGGTAATGT--CCTTCATAACATCAATGTTAGTCA-C  93

seq1  TTTCTGAGGCTTCTCAGACTGTTCAAATGAATGTTATAACTTTGGTAAAT  148
      ||  ||| || |||||||||||||||||  ||||||||||||||||||||
seq2  TTCTTGAAGC-TCTCAGACTGTTCAAAT--ATGTTATAACTTTGGTAAAT  140

seq1  CTACTCTCTTATTATTATAAAATGTTATTTTATCTCTAAAAATATTATTT  198
      ||||||||||| ||||||||||||||| ||||||||||||||||||| ||
seq2  CTACTCTCTTA-TATTATAAAATGTTA-TTTATCTCTAAAAATATTA-TT  187

seq1  TTGTTTTAAACTTTAATTTGTTTGATTTTATAGTGATTTCAGATTTTTTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAAACTTTAATTTGTTTGATTTTATAGTGATTTCAGATTTTTTA  237

seq1  TGAGTGTTCATTAAGTAAGATATATTTACCATCATTTTTCTTTTATTCTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTTCATTAAGTAAGATATATTTACCATCATTTTTCTTTTATTCTA  287

seq1  TTTGTCTTTGAATCCAGCTGGGCTCAC-AATATAGCCCCTATACTTACAT  347
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTGTC-TTGAATCCAGCTGGGCTCACAAATATAGCCCCTATACTTACAT  336

seq1  CTATTCTGACCTTTATAATGTCACTCTCTCTTTTCTTC-AACTTAGACTA  396
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  CTATTCTGACCTTTATAATGTCACTCTCTC-TTTCTTCAAACTTAGACTA  385

seq1  TGCTCCATTCATATTTATGATCCTTATCAATGCAGTTGAATTTGATTCAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCATTCATATTTATGATCCTTATCAATGCAGTTGAATTTGATTCAT  435

seq1  TTGTTCTAGCCCTAGTTCTATGTAACTTAGTACTTTCTAATGGATTATCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTAGCCCTAGTTCTATGTAACTTAGTACTTTCTAATGGATTATCC  485

seq1  CATTCCTTTCATGGTATTTTGTATTATGTTCCTGATGGCTGCTGCAGGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTTTCATGGTATTTTGTATTATGTTCCTGATGGCTGCTGCAGGTC  535

seq1  TTCCCCACTATGTGTGTTGTTGTCCCTTAGGTGGTGAGCCCCAACAATTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCACTATGTGTGTTGTTGTCCCTTAGGTGGTGAGCCCCAACAATTT  585

seq1  CATGGCTATATGTAGATGTACATATTCTCTTTTTTGGAACAGTACATCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTATATGTAGATGTACATATTCTCTTTTTTGGAACAGTACATCAA  635

seq1  TAGACACAACATGGGCAGTCAAACTATATGTATGATGCACCACAGTGGTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACAACATGGGCAGTCAAACTATATGTATGATGCACCACAGTGGTC  685

seq1  AGAGG  701
      |||||
seq2  AGAGG  690

seq1: chr9_121050409_121051428
seq2: B6Ng01-088F16.g_70_1079 (reverse)

seq1  CACACTCTGTCACACGCTCATACACACATAAAATACTGTTATGTGTTGAG  50
      ||||||| |||||||| |||||||||||| ||||| || || | | ||||
seq2  CACACTC-GTCACACG-TCATACACACAT-AAATA-TGGTAAG-GGTGAG  45

seq1  GGTTTTTTCCCCTTTAAAGTGTTTATCATTCAGGCTGTATGTGTAAGACA  100
      |||||||   || |||||||||||||||||||||||||| ||||| ||||
seq2  GGTTTTT---CCCTTAAAGTGTTTATCATTCAGGCTGTA-GTGTAGGACA  91

seq1  GACATGTGTATGTATACACTTATGT-GTGTGCCAGTGTGCTCACACAAGG  149
      ||||||| | ||||| || || ||| | ||||||||||||||||||||||
seq2  GACATGT-TTTGTATTCAATT-TGTGGGGTGCCAGTGTGCTCACACAAGG  139

seq1  CCACACATGTCAGTCATAAATAGATAACATCTGTTGTCATCTGTTGTCTG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACATGTCAGTCATAAATAGATAACATCTGTTGTCATCTGTTGTCTG  189

seq1  TTGGTCCCAGCTTCTGTTGCCTGTTTCGAAGCAAGGTCTCTATGTTCTAG  249
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCGAGCTTCTGTTGCCTGTTTCGAAGCAAGGTCTCTATGTTCTAG  239

seq1  TTAGCTGGCCTGCTGGCATCTGAGGATTCTCCTGTCTCTAGGAATGCAGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGGCCTGCTGGCATCTGAGGATTCTCCTGTCTCTAGGAATGCAGC  289

seq1  AACTACAGATGCTCACACTGCTTACCCAAGCATTGTGTGACTTCTGAGAA  349
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACTACAGATGCTCACACTGCTTACCCAAGCATTGTGTGACTTGTGAGAA  339

seq1  TCTAACTCAGGCCTCCGGGCTAGCTCCCTAACTCCACACTTCCTCAGTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACTCAGGCCTCCGGGCTAGCTCCCTAACTCCACACTTCCTCAGTTT  389

seq1  GAAGTATCACCCATTCCATGGGGTGCAAACTCAAGTAAGGGGTTAAAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATCACCCATTCCATGGGGTGCAAACTCAAGTAAGGGGTTAAAACA  439

seq1  TGTGAACTTGGGCCAACACAGTGTCAGCGACACAAAGTGGGAGACTGAAC  499
      ||||||||||||||||||||||||||||||| |||||||||||| |||||
seq2  TGTGAACTTGGGCCAACACAGTGTCAGCGACTCAAAGTGGGAGATTGAAC  489

seq1  AGTGACCCTGCCCCTTGGCAGCTACAACGCTGGCCTCCCAGTACCTGGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCCTGCCCCTTGGCAGCTACAACGCTGGCCTCCCAGTACCTGGTG  539

seq1  AAAGCGGGGTTGTGTTCCGTCATGGCGACGAGCAGCTTCAGCGCATAGGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGGGGTTGTGTTCCGTCATGGCGACGAGCAGCTTCAGCGCATAGGC  589

seq1  AGGAACGGGGTCAGGCTCCATGAGGATGTGCTCATACCTGAGAAACGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACGGGGTCAGGCTCCATGAGGATGTGCTCATACCTGAGAAACGAAA  639

seq1  CCACCCGTCACGCCTCAGTCTCCCTCCTCAGACGGCCCGATGTTAGGGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCGTCACGCCTCAGTCTCCCTCCTCAGACGGCCCGATGTTAGGGAG  689

seq1  TGACAGATTGGTACATGCCAACATCTGGCTATGAGCATAGCACTCGCACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGATTGGTACATGCCAACATCTGGCTATGAGCATAGCACTCGCACA  739

seq1  GATTACTCTCTTGGTGAAGCCAACGCCCACTGCATAAAGCACAAGGGAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTCTCTTGGTGAAGCCAACGCCCACTGCATAAAGCACAAGGGAAA  789

seq1  GCCAGCCAGCGCTGAGCTGTGCAGCCAGCAAGAGACCTGGGCACGGGTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCAGCGCTGAGCTGTGCAGCCAGCAAGAGACCTGGGCACGGGTTG  839

seq1  ACCATGCTAGTGTCTCCAAGCCACTCCACATTTGGGTCCTGTGGTGGACA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGCTAGTGTCTCCAAGCCACTCCACATTTGGGTCCTGTGGTGGACA  889

seq1  TGAGGCCCAGTGTTGCACCCACAGCTGTGCCCACAGTGACATTCATGGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCCAGTGTTGCACCCACAGCTGTGCCCACAGTGACATTCATGGCT  939

seq1  AAAACAGAGCACAGTGGCAGTGGACACGTGGTCAATCACAAGGGGACAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAGCACAGTGGCAGTGGACACGTGGTCAATCACAAGGGGACAGA  989

seq1  CGCCGGATGAAGAAAGAATTC  1020
      |||||||||||||||||||||
seq2  CGCCGGATGAAGAAAGAATTC  1010