BAC Information

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BAC

Clone NameB6Ng01-088J17
Chromosome9 (Build37)
Map Location 26,677,331 - 26,678,353
singlet/doubletsinglet
Overlap genenone
Upstream geneB3gat1, BC038479, Glb1l3
Downstream geneGm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088J17.bB6Ng01-088J17.g
ACCDH901415DH901416
length1,187527
definitionDH901415|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J17, 5' end.DH901416|Mus musculus domesticus DNA, BAC clone: B6Ng01-088J17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtaaggaagttacctattcagtaactaattaagcattacaaag
gaccaagctggaatagctcaggactagtctgtagagtgtttacttgaggc
agtaaccagtcttacccaaacacaatggcctagtgaataggtgggtttac
catgaaaaaagttagggaatcccactgagacagttttcttcactaggccc
aaagaaatcaggcagaactatagaacataaataaattgtatgcctcagtc
cagcttttttttttaatattaataacagggaggaaattgtaacctccacc
cagcctgaagctggctgaaccagacctcgaccttgctgccactaaagaga
ttatctagggtagagcctccctagatcactctaatattcagccactgtca
ctgctacctgctgggaggccgcctagctattctggagactacatcctatc
ctgcacgtggtcacctgcagctgggctccaagaatgaattggtgggaatg
ggcctcccctcccccttttataagcacagttgccattaaacatttgagcc
ttgatcagaacattgtcttggctccacttctctcttgtccgcctagtttc
cctttctttcagctccggcctgccactcaggtgtaccccgtccatgtgag
ccactggacagctcgcaacaggggaatcactggattcctttatttgttcc
tgttcttgatgtgatatcttttccttgctagttgccattactgtctttct
gataaacacactggaacaggcatctaagtctaactttctggagctactag
atctcacgcatttaaaaactcttcttacaactttgtcaaaccaaataaga
agaaaacaccttttgcatgttggtgtcttgcagctagtcaaccctgaaca
agaaaaagaaaagaagagaagagaaaagaagagagaggaaggaaggaaag
aaggaggaatgatgtgttaggtccaaagaaaattccagttccccaaactc
caaagacagtccaaatatccaatatgagctcaacctggactaagaagctt
tctggagttagataaacatcagcagacctcaagaacttatgaaacttgtc
cctaatacaaaaaagtctgttcttacctagcaaaagtgacctatggactc
cctatcaagatctctctttgcttcctttgtttctctc

tcttgaggcaacgtgaccttgggatacataatttagcattgcagcattgg
aggccaggagtcaccctacaaaccacacaaacaccaatcccagccagaca
gggatagattattgaacacacatgtaaagactgattgattagggcaagag
ctgaaagctgcattcttgtgcattgtccagggtcactttatggggggggg
gggtggacaataacaaactaagcagatgcaggtgcagggtggttggcctt
ttctcaaggtttttagtactttagacaataatcttgactaacctttatct
ggcttggctctgaatgaaggctacagttggtaaatctagcgtggctctga
gtgaagaccatggctagagacttccccaaaagagtcctaagtctctgtgg
tagtttgaatacactaggccaatgggaggtgctactggtagaaggtgtgg
ccttattgaaggaagtgttctagctccacccagtgtggaagatcagtctt
ttctttgttgcctttatacaagaagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_26677331_26678353
seq2: B6Ng01-088J17.b_220_1232

seq1  CTGAGACAGTTTTCTTCACTAGGCCCAAAGAAATCAGGCAGAACTATAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACAGTTTTCTTCACTAGGCCCAAAGAAATCAGGCAGAACTATAGA  50

seq1  ACATAAATAAATTGTATGCCTCAGTCCAGCTTTTTTTTTTAATATTAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATAAATTGTATGCCTCAGTCCAGCTTTTTTTTTTAATATTAATA  100

seq1  ACAGGGAGGAAATTGTAACCTCCACCCAGCCTGAAGCTGGCTGAACCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAGGAAATTGTAACCTCCACCCAGCCTGAAGCTGGCTGAACCAGA  150

seq1  CCTCGACCTTGCTGCCACTAAAGAGATTATCTAGGGTAGAGCCTCCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGACCTTGCTGCCACTAAAGAGATTATCTAGGGTAGAGCCTCCCTAG  200

seq1  ATCACTCTAATATTCAGCCACTGTCACTGCTACCTGCTGGGAGGCCGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTCTAATATTCAGCCACTGTCACTGCTACCTGCTGGGAGGCCGCCT  250

seq1  AGCTATTCTGGAGACTACATCCTATCCTGCACGTGGTCACCTGCAGCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATTCTGGAGACTACATCCTATCCTGCACGTGGTCACCTGCAGCTGG  300

seq1  GCTCCAAGAATGAATTGGTGGGAATGGGCCTCCCCTCCCCCTTTTATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAGAATGAATTGGTGGGAATGGGCCTCCCCTCCCCCTTTTATAAG  350

seq1  CACAGTTGCCATTAAACATTTGAGCCTTGATCAGAACATTGTCTTGGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTGCCATTAAACATTTGAGCCTTGATCAGAACATTGTCTTGGCTC  400

seq1  CACTTCTCTCTTGTCCGCCTAGTTTCCCTTTCTTTCAGCTCCGGCCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCTCTCTTGTCCGCCTAGTTTCCCTTTCTTTCAGCTCCGGCCTGCC  450

seq1  ACTCAGGTGTACCCCGTCCATGTGAGCCACTGGACAGCTCGCAACAGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGTGTACCCCGTCCATGTGAGCCACTGGACAGCTCGCAACAGGGG  500

seq1  AATCACTGGATTCCTTTATTTGTTCCTGTTCTTGATGTGATATCTTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTGGATTCCTTTATTTGTTCCTGTTCTTGATGTGATATCTTTTCC  550

seq1  TTGCTAGTTGCCATTACTGTCTTTCTGATAAACACACTGGAACAGGCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAGTTGCCATTACTGTCTTTCTGATAAACACACTGGAACAGGCATC  600

seq1  TAAGTCTAACTTTCTGGAGCTACTAGATCTCAGGCATTTAAAAACTCTTC  650
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAAGTCTAACTTTCTGGAGCTACTAGATCTCACGCATTTAAAAACTCTTC  650

seq1  TTACAACTTTGTCAAACCAAATAAGAAGAAAACACCTTTTGCATGTTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACTTTGTCAAACCAAATAAGAAGAAAACACCTTTTGCATGTTGGT  700

seq1  GTCTTGCAGCTAGTCAACCCTGAACAAGAAAAAGAAAAGAAGAGAAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGCAGCTAGTCAACCCTGAACAAGAAAAAGAAAAGAAGAGAAGAGA  750

seq1  AAAGAAGAGAGAGGAAGGAAGGAAAGAAGGAAGGAAGGATGTGTTAGGTC  800
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  AAAGAAGAGAGAGGAAGGAAGGAAAGAAGG-AGGAATGATGTGTTAGGTC  799

seq1  CAAAGAAAATTCCAGTTCCCCAAACTCCAAAAGACAGTCCAAATATCCAA  850
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  CAAAGAAAATTCCAGTTCCCCAAACTCC-AAAGACAGTCCAAATATCC-A  847

seq1  ATATGAGCTCAACCTGGACTATAGAAGGCTTTCTGGAGGTTAGATAAACA  900
      ||||||||||||||||||||| |||| |||||||||| ||||||||||||
seq2  ATATGAGCTCAACCTGGACTA-AGAA-GCTTTCTGGA-GTTAGATAAACA  894

seq1  TCAGCAGACCTCAGGAACTTATGAAACTTGTCCCCTATACCAAAAAAAGT  950
      ||||||||||||| ||||||||||||||||||||  ||||  ||||||||
seq2  TCAGCAGACCTCAAGAACTTATGAAACTTGTCCCTAATAC--AAAAAAGT  942

seq1  CTGTTCCTTACCTATGGCAGAAGTGACCTAT-GACT-CCTATCAGGATCT  998
      ||||| ||||||||  ||| ||||||||||| |||| ||||||| |||||
seq2  CTGTT-CTTACCTA--GCAAAAGTGACCTATGGACTCCCTATCAAGATCT  989

seq1  CTC-TTGCTTCCTCTTGTTCTCTCTC  1023
      ||| ||||||||| ||||| ||||||
seq2  CTCTTTGCTTCCT-TTGTT-TCTCTC  1013


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