BAC Information

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BAC

Clone NameB6Ng01-088L12
Chromosome9 (Build37)
Map Location 55,000,577 - 55,147,819
singlet/doubletdoublet
Overlap geneUbe2q2, Fbxo22, Nrg4
Upstream geneCyp19a1, LOC100039064, Gldn, Dmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik
Downstream geneAI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088L12.bB6Ng01-088L12.g
ACCDH901498DH901499
length1,0241,067
definitionDH901498|Mus musculus domesticus DNA, BAC clone: B6Ng01-088L12, 5' end.DH901499|Mus musculus domesticus DNA, BAC clone: B6Ng01-088L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,146,776 - 55,147,819)(55,000,577 - 55,001,646)
sequence
gaattcatctttaaaaaaaaaaaaacctcttaattttgatatctgaatga
tcatttttttctttagtagctaatgctgattgtatcctgaggcatcttta
ttcaaagttgtgagctaattccttgacagtgtttttttgtttgtttggtt
tggtttttttagatgctgaatagatttagcttttacattttgatataaga
tctattataatttttatagaaaacatagagttaaggcttaaccctgaatt
tacttctgttatttttattgcttggagaagtcactaagcattccagtttc
aagaatgagaacagacttcatatagttatggagcgactggcacatgcaga
cgcagaggggactgctactggccatctttggagaccaataggttcagttg
atttctgtgcattgactttgtatctcatgtccttacccaatttgttcctt
aattttagtttttagcagattcttttgaatattctctttcccattgtttt
ttttttcctagcacacaaaggaatgggtttcaatgacatttctctctctc
tctctctctctctctctctctctctctctctctctctctctggcgcgggg
ggcgcgcacacacacacacacatcattatttgggggttcttaccttacca
cagcccttctcctttcactggtatctttccttaatttttttttttttggg
cctgagtaagatttggtgttgtatatgcatatgaagacatatctgtgtgt
gtgcacgtgaacactgtgcacatgtgtgtaatcggccagactctctcgcc
atgtaactgtgtcttgtgtatctttcaaacagaggcataacctctacatg
actccagagctattaataagcctgatcagctaacagctctttgctctgga
atcccttctctcccctctctagtgctgggatcaagagaaggctccaggcc
cattgtctttattgtgtcgggcgaccaacccggattctacattgagaaca
aaacttttcctctgagccctggtg
gaattcaaatacaagtgcctggtctactaggtttgtgacctgctattttg
cacaaagttgtaggtcattagtgtagtgggcttaagtcgttcttgaactt
ttcctctttacatagcagtatttattaagctctctgtacaccaggtttcc
aagctcccaagcaacatgtgaatggcatcgtacttgtggaccagcttctg
aatagtcctctgaggacactgctcactttcttcctaaccttctatatcag
ctgttcttcctcagtgggacgagctcctgcctctcgcctctgccctgtcc
cagcctgccttttctatggttgattgccttttaagactttctgtgtcacg
cgcagttcataataacatttcccctttttccttttagttcttgtgatttc
tgcttttttttttcttccatgtttactcataattctgattatcttttctc
caagttgtaatagtggcagaatattatataattataaatttgtgccttat
attttctttcagttcatacttgttctattgactatatggccactgttgta
gttatatttgaagggaagttttcctgccttgaaagatagctggtaagaat
ttctcagacagtatcatgggcagtaaagagatacttaaaaggtcattgta
gatttgataggacatctgtaggaagaccagtgtcagaattaaaaccacaa
catgagtgtctgctttcctgggccagggaaagtgggctggtttggtttat
tttttccatcctgttttataaatttgttgtactctcgaatatgaagctca
cagagtctttatttcttgttttctgtggactcatgaaagattatctgtta
cataaacgtacgcattgctttttccatttcagtaaacaggcctggttgcc
agtcttcactaacatctagttgtataatcacagtccaaagcaaagcagct
tattttataccagtatggccattttgggagctaatatgtggctttttttt
ttttttagtcatttaaaatacttaaaggtagcagttccattactcctttt
ggggggggtgggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_55146776_55147819
seq2: B6Ng01-088L12.b_48_1070 (reverse)

seq1  ACCAGGGGCTCAGAGGGAAAAGTTCTTGTCATGCAATTGTGAGGATCAGG  50
      |||| ||||||||| ||||||||| ||||  | ||| ||| || ||| ||
seq2  ACCA-GGGCTCAGA-GGAAAAGTT-TTGTTCT-CAA-TGT-AGAATCCGG  44

seq1  GGATTGTATCCCCAGCACCCACTTAAATGTCATTGGGCCTGGTAGCTTGC  100
      |  |||  || || | || || |  || | || ||||||||| ||| | |
seq2  G--TTG-GTCGCCCG-ACACAAT--AAAGACAATGGGCCTGG-AGCCTTC  87

seq1  CTGTGATTCCAGCACATGGGAGGTGGAGAGAAGGGATTCCCAGAGCAAGC  150
         |||| |||||||  | |||| |||||||||||||| |||||||||  
seq2  TCTTGATCCCAGCACTAGAGAGG-GGAGAGAAGGGATT-CCAGAGCAA-A  134

seq1  GAGCTGGTTAGCTGAACAGGCTTGATTAGTGTGCTCTGGAGTCATGTGAG  200
      ||||| ||||||||| ||||||| |||| |  ||||||||||||||| ||
seq2  GAGCT-GTTAGCTGATCAGGCTT-ATTAAT-AGCTCTGGAGTCATGT-AG  180

seq1  AGGCTCTGCACCAGTGTGGAAGATGCACAATGATAAAGTTACATAACATC  250
      ||| | |||  | || || ||||| ||||| || | ||||||||  |   
seq2  AGGTTATGCCTCTGTTTGAAAGATACACAA-GACACAGTTACATGGCGAG  229

seq1  AAATTCTGGCCTGATTACACACATGTGCACATGTGTTCATGTGCACACAC  300
      | | ||||||| ||||||||||||||||||| ||||||| ||||||||||
seq2  AGAGTCTGGCC-GATTACACACATGTGCACA-GTGTTCACGTGCACACAC  277

seq1  ACATATGTGGACATGCATATGCATATACAACA-CAAATCATATACAGG-C  348
      ||| || ||    | ||||||||||||||||| |||||| ||  |||| |
seq2  ACAGATATG--TCTTCATATGCATATACAACACCAAATCTTACTCAGGCC  325

seq1  CAAAAAAAAAAAAATTAAGGAAAGATACCAGTGAAAGGAGAAGGGCTGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAATTAAGGAAAGATACCAGTGAAAGGAGAAGGGCTGTG  375

seq1  GTAAGGTAAGAA-CAACAAATAATGATGTGTGTGTGTGTGTGTGTG-TGT  446
      |||||||||||| |  |||||||||||||||||||||||||| | |    
seq2  GTAAGGTAAGAACCCCCAAATAATGATGTGTGTGTGTGTGTGCGCGCCCC  425

seq1  GTGTGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  496
        | |  |||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCGCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  475

seq1  GAGAGAGAAATGTCATTGAAACCCATTCCTTTGTGTGCTAGGAAAAAAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAAATGTCATTGAAACCCATTCCTTTGTGTGCTAGGAAAAAAAA  525

seq1  AACAATGGGAAAGAGAATATTCAAAAGAATCTGCTAAAAACTAAAATTAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGGGAAAGAGAATATTCAAAAGAATCTGCTAAAAACTAAAATTAA  575

seq1  GGAACAAATTGGGTAAGGACATGAGATACAAAGTCAATGCACAGAAATCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAAATTGGGTAAGGACATGAGATACAAAGTCAATGCACAGAAATCA  625

seq1  ACTGAACCTATTGGTCTCCAAAGATGGCCAGTAGCAGTCCCCTCTGCGTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCTATTGGTCTCCAAAGATGGCCAGTAGCAGTCCCCTCTGCGTC  675

seq1  TGCATGTGCCAGTCGCTCCATAACTATATGAAGTCTGTTCTCATTCTTGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTGCCAGTCGCTCCATAACTATATGAAGTCTGTTCTCATTCTTGA  725

seq1  AACTGGAATGCTTAGTGACTTCTCCAAGCAATAAAAATAACAGAAGTAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAATGCTTAGTGACTTCTCCAAGCAATAAAAATAACAGAAGTAAA  775

seq1  TTCAGGGTTAAGCCTTAACTCTATGTTTTCTATAAAAATTATAATAGATC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGTTAAGCCTTAACTCTATGTTTTCTATAAAAATTATAATAGATC  825

seq1  TTATATCAAAATGTAAAAGCTAAATCTATTCAGCATCTAAAAAAACCAAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCAAAATGTAAAAGCTAAATCTATTCAGCATCTAAAAAAACCAAA  875

seq1  CCAAACAAACAAAAAAACACTGTCAAGGAATTAGCTCACAACTTTGAATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAACAAAAAAACACTGTCAAGGAATTAGCTCACAACTTTGAATA  925

seq1  AAGATGCCTCAGGATACAATCAGCATTAGCTACTAAAGAAAAAAATGATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCCTCAGGATACAATCAGCATTAGCTACTAAAGAAAAAAATGATC  975

seq1  ATTCAGATATCAAAATTAAGAGGTTTTTTTTTTTTTAAAGATGAATTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGATATCAAAATTAAGAGGTTTTTTTTTTTTTAAAGATGAATTC  1023

seq1: chr9_55000577_55001646
seq2: B6Ng01-088L12.g_69_1135

seq1  GAATTCAAATACAAGTGCCTGGTCTACTAGGTTTGTGACCTGCTATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATACAAGTGCCTGGTCTACTAGGTTTGTGACCTGCTATTTTG  50

seq1  CACAAAGTTGTAGGTCATTAGTGTAGTGGGCTTAAGTCGTTCTTGAACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTTGTAGGTCATTAGTGTAGTGGGCTTAAGTCGTTCTTGAACTT  100

seq1  TTCCTCTTTACATAGCAGTATTTATTAAGCTCTCTGTACACCAGGTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTTACATAGCAGTATTTATTAAGCTCTCTGTACACCAGGTTTCC  150

seq1  AAGCTCCCAAGCAACATGTGAATGGCATCGTACTTGTGGACCAGCTTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCCAAGCAACATGTGAATGGCATCGTACTTGTGGACCAGCTTCTG  200

seq1  AATAGTCCTCTGAGGACACTGCTCACTTTCTTCCTAACCTTCTATATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCCTCTGAGGACACTGCTCACTTTCTTCCTAACCTTCTATATCAG  250

seq1  CTGTTCTTCCTCAGTGGGACGAGCTCCTGCCTCTCGCCTCTGCCCTGTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTTCCTCAGTGGGACGAGCTCCTGCCTCTCGCCTCTGCCCTGTCC  300

seq1  CAGCCTGCCTTTTCTATGGTTGATTGCCTTTTAAGACTTTCTGTGTCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCCTTTTCTATGGTTGATTGCCTTTTAAGACTTTCTGTGTCACG  350

seq1  CGCAGTTCATAATAACATTTCCCCTTTTTCCTTTTAGTTCTTGTGATTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAGTTCATAATAACATTTCCCCTTTTTCCTTTTAGTTCTTGTGATTTC  400

seq1  TGCTTTTTTTTTTCTTCCATGTTTACTCATAATTCTGATTATCTTTTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTTTTTTCTTCCATGTTTACTCATAATTCTGATTATCTTTTCTC  450

seq1  CAAGTTGTAATAGTGGCAGAATATTATATAATTATAAATTTGTGCCTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTGTAATAGTGGCAGAATATTATATAATTATAAATTTGTGCCTTAT  500

seq1  ATTTTCTTTCAGTTCATACTTGTTCTATTGACTATATGGCCACTGTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTCAGTTCATACTTGTTCTATTGACTATATGGCCACTGTTGTA  550

seq1  GTTATATTTGAAGGGAAGTTTTCCTGCCTTGAAAGATAGCTGGTAAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATATTTGAAGGGAAGTTTTCCTGCCTTGAAAGATAGCTGGTAAGAAT  600

seq1  TTCTCAGACAGTATCATGGGCAGTAAAGAGATACTTAAAAGGTCATTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGACAGTATCATGGGCAGTAAAGAGATACTTAAAAGGTCATTGTA  650

seq1  GATTTGATAGGACATCTGTAGGAAGACCAGTGTCAGAATTAAAACCACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGATAGGACATCTGTAGGAAGACCAGTGTCAGAATTAAAACCACAA  700

seq1  CATGAGTGTCTGCTTTCCTGGGCCAGGGAAAGTGGGCTGGTTTGGTTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGTCTGCTTTCCTGGGCCAGGGAAAGTGGGCTGGTTTGGTTTAT  750

seq1  TTTTTCCATCCTGTTTTATAAATTTGTTGTACTCTCGAATATGAAGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCATCCTGTTTTATAAATTTGTTGTACTCTCGAATATGAAGCTCA  800

seq1  CAGAGTCTTTATTTCTTGTTTTCTGTGGACTCATGAAAGATTATCTGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCTTTATTTCTTGTTTTCTGTGGACTCATGAAAGATTATCTGTTA  850

seq1  CATAAACGTACGCATTGCTTTTTCCATTTCAGTAAACAGGCCTGGTTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACGTACGCATTGCTTTTTCCATTTCAGTAAACAGGCCTGGTTGCC  900

seq1  AGTCTTCACTAACATCTAGTTGTTATAATCACAGTCCAAAGCAAAGCAGC  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTCTTCACTAACATCTAGTTG-TATAATCACAGTCCAAAGCAAAGCAGC  949

seq1  TTATTTTAATAACCAGTATGGCCATTTTGGGAGCTAATATGTGGCTTTTT  1000
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTA--TACCAGTATGGCCATTTTGGGAGCTAATATGTGGCTTTTT  997

seq1  TTTTTTTTTAGTCATTTTAAAAATACTT-AAGGTAGCAGTTCCATTACTC  1049
      |||||||||||||||||  ||||||||| |||||||||||||||||||||
seq2  TTTTTTTTTAGTCATTT--AAAATACTTAAAGGTAGCAGTTCCATTACTC  1045

seq1  CTTTT-GGGGGGTTGGGGGGTG  1070
      ||||| |||||| ||||||| |
seq2  CTTTTGGGGGGGGTGGGGGGGG  1067