BAC Information

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BAC

Clone NameB6Ng01-089H22
Chromosome9 (Build37)
Map Location 69,645,876 - 69,845,556
singlet/doubletdoublet
Overlap geneBnip2
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1
Downstream geneLOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089H22.bB6Ng01-089H22.g
ACCDH902058DH902059
length1,112808
definitionDH902058|Mus musculus domesticus DNA, BAC clone: B6Ng01-089H22, 5' end.DH902059|Mus musculus domesticus DNA, BAC clone: B6Ng01-089H22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(69,844,454 - 69,845,556)(69,645,876 - 69,646,683)
sequence
gaattcaaaagatccttctgcttcggcctctggaggactggggttaaagg
gatgtgccaccatgcccagctccataggtgatttttagcatattttttta
atatgtctctttagaggactccctgccccaccccgcccccagattgactg
acaagaatatactagaatattaggcaatactttggaagcaactatgaaaa
atcaaaactatacaatattgggcaagtaaggaaaaacaaaactaaactaa
aagaaagctaccttcataatctagtcttgaaaacttcaagtactttcaga
atcttctactttagaaacaaatttaggaactgcagaaaaaataacatatt
tcaaacaaaatccttcaatggattttagcaggctttatgttaagatttgg
ccatatcatacttctcctaaagagaacaccatggtaaacactatgcaata
taaacattcattcacaaagctcatataaaaagagtgaattaccttcccac
tcaaactcatcactgttctctgatggggtgtctaagccttccaggtcaac
ctctccagcttcatccaaatcatcggaccacagagagtcttcaccaggat
ccagggtcaggctgatgtctggggccatcagtttcttccttactttgttc
ccattaacttctaaggagcctgaaattggaaacaaggaagaagactgggc
tactcagatgctccatttcacagaggaacattttagtcacttcactcttg
agaaaaacatttaaaagaaaattccaaaatattcattaataaaacctggt
tgtgatcaccgctgctgctttctaaaagaagatacatttttattctattt
gttttaattttatgtattatgggtgttttgcttgcatatatgtctgtaca
cccacttttgtgcagttgcctaaggaggccagaagagttccagggaaact
ggaactggagttacagatggctggggagctacattgtggatgctaagaaa
ctgaacctgtggttcttttgcaggagcagcaagggttctaatggctaggc
cacctcctccaattcccaattaatttttaagtatgatatgcattggttgt
ctctggtgtggt
gaattccttggaaagatgttatattgtgtgaagtagcaagcaggacttcc
ttcaagttcctacttgactttcctcaatgatggactgtaacctagaaaca
taagccaaataaactctctcttcccttaagtggtttatgacccatagatt
ttattacagcaacaggaagaaaatcaggccagtctcctcctcgggctgct
tcctgttctaagcagttatgaagccacagggattctggcccggctaggaa
gaacgggctgctgaggacaggatgttaaggtaatgtctgctttcagtgct
tgtctgagttctctgcttcctgacccactgcatggaattgtcccttctgc
tgtgttccccccccccccccgcatacacaccttcctgagcctataccaca
aaccaaatatccccctgaaaccttgcaccctaataaatctttcttccatt
aagttgcttctgttgggtacattgtcataatgacaagaaaagtaacaaat
agtctagacagactacatagaaagggatgcctgcctgcctcctgcctgag
ctggggggttggccttttttccatcactaagacccagactgaagcatcag
ctcttcttggatcttgaaccactggctttgcttctaaattttataccatg
ggctttcttggctctcggtcttcaggctcaaaactcaaaattcagagatt
ctccttcatctcgggcttgctgaccacttgggatctcttaacctctgtga
ccatgtgtggtaatctctcaatctctctctctctctctctctctctctct
tctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_69844454_69845556
seq2: B6Ng01-089H22.b_47_1158 (reverse)

seq1  ACCACA-CAGAGAC-ACACATGCATATACATACTTAAAAATAAATTGGGA  48
      |||||| ||||||| ||  |||||||| ||||||||||||| ||||||||
seq2  ACCACACCAGAGACAACCAATGCATAT-CATACTTAAAAATTAATTGGGA  49

seq1  A-TGGA-GAGGTGGCCTAGCAATTAAGAACACTTGCTGCTCCTGC-AAAG  95
      | |||| ||||||||||||| ||| ||||| |||||||||||||| ||||
seq2  ATTGGAGGAGGTGGCCTAGCCATT-AGAACCCTTGCTGCTCCTGCAAAAG  98

seq1  AACC-CAGGTTCAG-TTCTTAGCATCCACATTGTAGCT-CACAGCCATCT  142
      |||| ||||||||| ||||||||||||||| ||||||| | |||||||||
seq2  AACCACAGGTTCAGTTTCTTAGCATCCACAATGTAGCTCCCCAGCCATCT  148

seq1  GTAACTCCAGTTCCAGTTTCCCTGGAACTCTTCTGGCCTCCTTAGGC-AC  191
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTAACTCCAGTTCCAGTTTCCCTGGAACTCTTCTGGCCTCCTTAGGCAAC  198

seq1  TGCACAAAAGT-GGTGTACAGACATATATGCAAGCAAAACACCCAT-ATA  239
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  TGCACAAAAGTGGGTGTACAGACATATATGCAAGCAAAACACCCATAATA  248

seq1  CATAAAATTAAAACAAATAGAATAAAAATGTATCTTCTTTTAGAAAGCAG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTAAAACAAATAGAATAAAAATGTATCTTCTTTTAGAAAGCAG  298

seq1  CAGCGGTGATCACAACCAGGTTTTATTAATGAATATTTTGGAATTTTCTT  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGGTGATCACAACCAGGTTTTATTAATGAATATTTTGGAATTTTCTT  348

seq1  TTAAATGTTTTTCTCAAGAGTGAAGTGACTAAAATGTTCCTCTGTGAAAT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTTTTTCTCAAGAGTGAAGTGACTAAAATGTTCCTCTGTGAAAT  398

seq1  GGAGCATCTGAGTAGCCCAGTCTTCTTCCTTGTTTCCAATTTCAGGCTCC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATCTGAGTAGCCCAGTCTTCTTCCTTGTTTCCAATTTCAGGCTCC  448

seq1  TTAGAAGTTAATGGGAACAAAGTAAGGAAGAAACTGATGGCCCCAGACAT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGTTAATGGGAACAAAGTAAGGAAGAAACTGATGGCCCCAGACAT  498

seq1  CAGCCTGACCCTGGATCCTGGTGAAGACTCTCTGTGGTCCGATGATTTGG  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGACCCTGGATCCTGGTGAAGACTCTCTGTGGTCCGATGATTTGG  548

seq1  ATGAAGCTGGAGAGGTTGACCTGGAAGGCTTAGACACCCCATCAGAGAAC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCTGGAGAGGTTGACCTGGAAGGCTTAGACACCCCATCAGAGAAC  598

seq1  AGTGATGAGTTTGAGTGGGAAGGTAATTCACTCTTTTTATATGAGCTTTG  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGAGTTTGAGTGGGAAGGTAATTCACTCTTTTTATATGAGCTTTG  648

seq1  TGAATGAATGTTTATATTGCATAGTGTTTACCATGGTGTTCTCTTTAGGA  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGAATGTTTATATTGCATAGTGTTTACCATGGTGTTCTCTTTAGGA  698

seq1  GAAGTATGATATGGCCAAATCTTAACATAAAGCCTGCTAAAATCCATTGA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATGATATGGCCAAATCTTAACATAAAGCCTGCTAAAATCCATTGA  748

seq1  AGGATTTTGTTTGAAATATGTTATTTTTTCTGCAGTTCCTAAATTTGTTT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTGTTTGAAATATGTTATTTTTTCTGCAGTTCCTAAATTTGTTT  798

seq1  CTAAAGTAGAAGATTCTGAAAGTACTTGAAGTTTTCAAGACTAGATTATG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGTAGAAGATTCTGAAAGTACTTGAAGTTTTCAAGACTAGATTATG  848

seq1  AAGGTAGCTTTCTTTTAGTTTAGTTTTGTTTTTCCTTACTTGCCCAATAT  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAGCTTTCTTTTAGTTTAGTTTTGTTTTTCCTTACTTGCCCAATAT  898

seq1  TGTATAGTTTTGATTTTTCATAGTTGCTTCCAAAGTATTGCCTAATATTC  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGTTTTGATTTTTCATAGTTGCTTCCAAAGTATTGCCTAATATTC  948

seq1  TAGTATATTCTTGTCAGTCAATCTGGGGGCGGGGTGGGGCAGGGAGTCCT  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATTCTTGTCAGTCAATCTGGGGGCGGGGTGGGGCAGGGAGTCCT  998

seq1  CTAAAGAGACATATTAAAAAAATATGCTAAAAATCACCTATGGAGCTGGG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGACATATTAAAAAAATATGCTAAAAATCACCTATGGAGCTGGG  1048

seq1  CATGGTGGCACATCCCTTTAACCCCAGTCCTCCAGAGGCCGAAGCAGAAG  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGCACATCCCTTTAACCCCAGTCCTCCAGAGGCCGAAGCAGAAG  1098

seq1  GATCTTTTGAATTC  1103
      ||||||||||||||
seq2  GATCTTTTGAATTC  1112

seq1: chr9_69645876_69646683
seq2: B6Ng01-089H22.g_69_876

seq1  GAATTCCTTGGTTAGATGTTATATTGTGTGAAGTAGCAAGCAGGACTTCC  50
      |||||||||||  |||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGGAAAGATGTTATATTGTGTGAAGTAGCAAGCAGGACTTCC  50

seq1  TTCAAGTTCCTACTTGACTTTCCTCAATGATGGACTGTAACCTAGAAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTTCCTACTTGACTTTCCTCAATGATGGACTGTAACCTAGAAACA  100

seq1  TAAGCCAAATAAACTCTCTCTTCCCTTAAGTGGTTTATGACCCATAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAAATAAACTCTCTCTTCCCTTAAGTGGTTTATGACCCATAGATT  150

seq1  TTATTACAGCAACAGGAAGAAAATCAGGCCAGTCTCCTCCTCGGGCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACAGCAACAGGAAGAAAATCAGGCCAGTCTCCTCCTCGGGCTGCT  200

seq1  TCCTGTTCTAAGCAGTTATGAAGCCACAGGGATTCTGGCCCGGCTAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTCTAAGCAGTTATGAAGCCACAGGGATTCTGGCCCGGCTAGGAA  250

seq1  GAACGGGCTGCTGAGGACAGGATGTTAAGGTAATGTCTGCTTTCAGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGGCTGCTGAGGACAGGATGTTAAGGTAATGTCTGCTTTCAGTGCT  300

seq1  TGTCTGAGTTCTCTGCTTCCTGACCCACTGCATGGAATTGTCCCTTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGTTCTCTGCTTCCTGACCCACTGCATGGAATTGTCCCTTCTGC  350

seq1  TGTGTTCCCCCCCCCCCCCCGCATACACACCTTCCTGAGCCTATACCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCCCCCCCCCCCCCCGCATACACACCTTCCTGAGCCTATACCACA  400

seq1  AACCAAATATCCCCCTGAAACCTTGCACCCTAATAAATCTTTCTTCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATATCCCCCTGAAACCTTGCACCCTAATAAATCTTTCTTCCATT  450

seq1  AAGTTGCTTCTGTTGGGTACATTGTCATAATGACAAGAAAAGTAACAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCTTCTGTTGGGTACATTGTCATAATGACAAGAAAAGTAACAAAT  500

seq1  AGTCTAGACAGACTACATAGAAAGGGATGCCTGCCTGCCTCCTGCCTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAGACAGACTACATAGAAAGGGATGCCTGCCTGCCTCCTGCCTGAG  550

seq1  CTGGGGGGTTGGCC-TTTTTCCATCACTAAGACCCAGACTGAAGCATCAG  599
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGGGGGGTTGGCCTTTTTTCCATCACTAAGACCCAGACTGAAGCATCAG  600

seq1  CTCTTCTTGGATCTTGAACCACTGGCTTTGCTTCTAAA-TTTATACCATG  648
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTCTTCTTGGATCTTGAACCACTGGCTTTGCTTCTAAATTTTATACCATG  650

seq1  GGCTTTCTTGGCTCTCAGGTCTTCAGGCTCAAAACTCAAAATTCAGAGAT  698
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGCTTTCTTGGCTCTC-GGTCTTCAGGCTCAAAACTCAAAATTCAGAGAT  699

seq1  TCTCCTTCATCTCGGGCTTGCTGACCACTTGGGATCTCTTAACCTCTGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTCATCTCGGGCTTGCTGACCACTTGGGATCTCTTAACCTCTGTG  749

seq1  ACCATGTGTGGTAATCTCTCAATCTCTCTCTCTCTCTCTCTCTCTCTCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGTGGTAATCTCTCAATCTCTCTCTCTCTCTCTCTCTCTCTCTC  799

seq1  TCTCTCTCTC  808
      | ||||||||
seq2  T-TCTCTCTC  808