BAC Information

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BAC

Clone NameB6Ng01-089N12
Chromosome9 (Build37)
Map Location 31,953,716 - 32,134,017
singlet/doubletdoublet
Overlap geneGrit, Kcnj5
Upstream geneAplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622
Downstream geneKcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089N12.bB6Ng01-089N12.g
ACCDH902313DH902314
length759738
definitionDH902313|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N12, 5' end.DH902314|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,133,263 - 32,134,017)(31,953,716 - 31,954,434)
sequence
gaattcatccaaggcattgagaatatagtaagaagatgtagtttattaca
gactagcacaggacaccctcaagggaaagaacaaacaatgaacaaagaga
acattgtgtcaatgtacattgtggacagaccacactatttctaatagacc
tgaaatacatagttgtcttgggttcatatctgttgctttgataaaatact
ctgagcaaaagcaactcatgggaggaaagggttcatttggcttataactt
gcaagtcaccttccatcattgaggtcggggcaggaattcagggcaggaac
ttgaagcaaaagaatactggttgccagctaactctctggcctgctctctg
gctcgtgttcatctagaattcttatacaactcagacccacttgcctaagg
atagtgctacccacagtgggctatgctattttgtaccaatcatcagttaa
gacagtctctcacagacatggccaaaatccaatctgatgtagtaaaactc
tccattgataccctctcctcaggtaactctaaaatgtgtcaagttgacag
gtgaagctaactagtacaatatcttccccaaggggaatttttcctgtcca
ggtaattggtagatcaattttgactgactcttacaggagttggcatttga
tatgtatagaataaacactggtagacctgaaaaccagcttttttttgtat
tttttttaattggatattttcttattaaatttcaaatgttcatccccttt
ttctggttc
cggaatttagaaaggaaagcatggtccccaaccccatccttactcaacag
aataatcatgaattgattctcagtgaacgtgacatgcgttacaggtgcct
tgcagctcgttgaagttgttcaccttcagcactcagtgtcactttccctt
ccagttgtcttctctacagttgatgaacatggcatgtgctttttatatct
ctcctaagtgttgaggccgggatgaagccatgtgacagctccctgttcct
gttacacatcctcatgcagcaaccgacactttcggttcagtatttagtca
gctctcagctgtgttttcatgtagaactcaggtcaaaacctcatcagaag
gcacttcccatacactcaggcatgtgccttgccctgactgagcttctcag
ggccttctgcacttgtcaggcgggctgtgtggaagccctcacacctttct
cactgcacagcaggggtgacgacagattgctcctcagaggcctcatttct
gtgttgctgtttcttacactgaagaccttaggcttgcagtcacattatta
gttgcttgcttgcgctaatcttctattttttattcatttcaaagtttaat
tttattttattgtaatgtgctcatgcttgtacgtggtgtggtgtgatgtg
agaacatgtacgtgttgtgccttggcatgcacgtggaggtcaagggggca
ccttatgaaggtgtttctctccttgcaccatgggcatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_32133263_32134017
seq2: B6Ng01-089N12.b_46_804 (reverse)

seq1  GAACCAG-AAAAGGGGATG-ACATTTGAAATATAAATAAAGAAAATATCC  48
      ||||||| ||||||||||| ||||||||||| |||   ||||||||||||
seq2  GAACCAGAAAAAGGGGATGAACATTTGAAATTTAA--TAAGAAAATATCC  48

seq1  AATT-AAAAAAATACAAATAAAAGCTGG-TTTCAGGTCTACCAGTGTTTA  96
      |||| ||||||||||||| ||||||||| |||||||||||||||||||||
seq2  AATTAAAAAAAATACAAAAAAAAGCTGGTTTTCAGGTCTACCAGTGTTTA  98

seq1  TTCTATACATATC-AATGCCAACTCCTGTAAGAGTCAGTCAAAATTGATC  145
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCTATACATATCAAATGCCAACTCCTGTAAGAGTCAGTCAAAATTGATC  148

seq1  TACCAATTACCTGGACAGG-AAAATTCCCCTTGGGGAAGATATTGTACTA  194
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TACCAATTACCTGGACAGGAAAAATTCCCCTTGGGGAAGATATTGTACTA  198

seq1  GTTAGCTTCACCTGTCAACTTGACACATTTTAGAGTTACCTGAGGAGAGG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTTCACCTGTCAACTTGACACATTTTAGAGTTACCTGAGGAGAGG  248

seq1  GTATCAATGGAGAGTTTTACTACATCAGATTGGATTTTGGCCATGTCTGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAATGGAGAGTTTTACTACATCAGATTGGATTTTGGCCATGTCTGT  298

seq1  GAGAGACTGTCTTAACTGATGATTGGTACAAAATAGCATAGCCCACTGTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACTGTCTTAACTGATGATTGGTACAAAATAGCATAGCCCACTGTG  348

seq1  GGTAGCACTATCCTTAGGCAAGTGGGTCTGAGTTGTATAAGAATTCTAGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCACTATCCTTAGGCAAGTGGGTCTGAGTTGTATAAGAATTCTAGA  398

seq1  TGAACACGAGCCAGAGAGCAGGCCAGAGAGTTAGCTGGCAACCAGTATTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACGAGCCAGAGAGCAGGCCAGAGAGTTAGCTGGCAACCAGTATTC  448

seq1  TTTTGCTTCAAGTTCCTGCCCTGAATTCCTGCCCCGACCTCAATGATGGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTCAAGTTCCTGCCCTGAATTCCTGCCCCGACCTCAATGATGGA  498

seq1  AGGTGACTTGCAAGTTATAAGCCAAATGAACCCTTTCCTCCCATGAGTTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACTTGCAAGTTATAAGCCAAATGAACCCTTTCCTCCCATGAGTTG  548

seq1  CTTTTGCTCAGAGTATTTTATCAAAGCAACAGATATGAACCCAAGACAAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTCAGAGTATTTTATCAAAGCAACAGATATGAACCCAAGACAAC  598

seq1  TATGTATTTCAGGTCTATTAGAAATAGTGTGGTCTGTCCACAATGTACAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTTCAGGTCTATTAGAAATAGTGTGGTCTGTCCACAATGTACAT  648

seq1  TGACACAATGTTCTCTTTGTTCATTGTTTGTTCTTACCCTTGAGGGTGTC  694
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGACACAATGTTCTCTTTGTTCATTGTTTGTTCTTTCCCTTGAGGGTGTC  698

seq1  CTGTGCTAGTCTGTAATAAACTACATCTTCTAACTATATTCTCAATGCCT  744
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGTGCTAGTCTGTAATAAACTACATCTTCTTACTATATTCTCAATGCCT  748

seq1  TGGATGAATTC  755
      |||||||||||
seq2  TGGATGAATTC  759

seq1: chr9_31953716_31954434
seq2: B6Ng01-089N12.g_85_807

seq1  AAAGCATGGTCCCCAACCCCATCCTTACTCAACAGAACTTTTCATGAATT  50
      ||||||||||||||||||||||||||||||||||||| |  |||||||||
seq2  AAAGCATGGTCCCCAACCCCATCCTTACTCAACAGAA-TAATCATGAATT  49

seq1  GATTCTCAGTGAACGTGACATGCGTTACAGGTGCCTTGCAGCTCGTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCAGTGAACGTGACATGCGTTACAGGTGCCTTGCAGCTCGTTGAA  99

seq1  GTTGTTCACCTTCAGCACTCAGTGTCACTTTCCCTTCCAGTTGTCTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTCACCTTCAGCACTCAGTGTCACTTTCCCTTCCAGTTGTCTTCTC  149

seq1  TACAGTTGATGAACATGGCATGTGCTTTTTATATCTCTCCTAAGTGTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGATGAACATGGCATGTGCTTTTTATATCTCTCCTAAGTGTTGA  199

seq1  GGCCGGGATGAAGCCATGTGACAGCTCCCTGTTCCTGTTACACATCCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGGGATGAAGCCATGTGACAGCTCCCTGTTCCTGTTACACATCCTCA  249

seq1  TGCAGCAACCGACACTTTCGGTTCAGTATTTAGTCAGCTCTCAGCTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAACCGACACTTTCGGTTCAGTATTTAGTCAGCTCTCAGCTGTGT  299

seq1  TTTCATGTAGAACTCAGGTCAAAACCTCATCAGAAGGCACTTCCCATACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGTAGAACTCAGGTCAAAACCTCATCAGAAGGCACTTCCCATACA  349

seq1  CTCAGGCATGTGCCTTGCCCTGACTGAGCTTCTCAGGGCCTTCTGCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCATGTGCCTTGCCCTGACTGAGCTTCTCAGGGCCTTCTGCACTT  399

seq1  GTCAGGCGGGCTGTGTGGAAGCCCTCACACCTTTCTCACTGCACAGCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGCGGGCTGTGTGGAAGCCCTCACACCTTTCTCACTGCACAGCAGG  449

seq1  GGTGACGACAGATTGCTCCTCAGAGGCCTCAGTTCTGTGTTGCTGTTTCT  500
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGTGACGACAGATTGCTCCTCAGAGGCCTCATTTCTGTGTTGCTGTTTCT  499

seq1  TACACTGAAGACCTTAGGCTTGCAGTCACATTAGTAGTTGCTTGCTTGCG  550
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TACACTGAAGACCTTAGGCTTGCAGTCACATTATTAGTTGCTTGCTTGCG  549

seq1  CTAATCTTCTA-TTTTTATTCATTTCAAAGTTTAATTTTA-TTTATTGTT  598
      ||||||||||| |||||||||||||||||||||||||||| ||||||| |
seq2  CTAATCTTCTATTTTTTATTCATTTCAAAGTTTAATTTTATTTTATTG-T  598

seq1  AATGTGCTCATGCTTGTACGTGGTGTGGTGTGATGTGAGAACAAGCACGT  648
      ||||||||||||||||||||||||||||||||||||||||||| | ||||
seq2  AATGTGCTCATGCTTGTACGTGGTGTGGTGTGATGTGAGAACATGTACGT  648

seq1  G-TGTGCCGTGGCATGCACGTGGAGGTC-AGGGGGCAGCTTA-GGAGGTG  695
      | |||||| ||||||||||||||||||| |||||||| |||| | |||||
seq2  GTTGTGCCTTGGCATGCACGTGGAGGTCAAGGGGGCACCTTATGAAGGTG  698

seq1  GTTCTCTCCTTGCACCAT-GGCATC  719
       ||||||||||||||||| ||||||
seq2  TTTCTCTCCTTGCACCATGGGCATC  723