BAC Information

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BAC

Clone NameB6Ng01-091A22
Chromosome9 (Build37)
Map Location 27,095,394 - 27,266,832
singlet/doubletdoublet
Overlap geneIgsf9b, Spata19
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3
Downstream geneLOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091A22.bB6Ng01-091A22.g
ACCDH903193DH903194
length1,0351,105
definitionDH903193|Mus musculus domesticus DNA, BAC clone: B6Ng01-091A22, 5' end.DH903194|Mus musculus domesticus DNA, BAC clone: B6Ng01-091A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,095,394 - 27,096,423)(27,265,710 - 27,266,832)
sequence
gaattctgctgcggctgaccacagacaacccacatgctgtggttcagtgt
gtgttaagcttatgcttccagaaggagtgtcacacctgcccacagagcag
agtgggtgggctttgtagttatgcacatgcggtgattggagggattctgg
gtaccaatctatgtgcagaatgtcctgcaccaatacatggtgcaccaatg
catttgctctgtcacacttacctatgtatgtcctctgcactagtgtttgt
gtggctgttgctttgtatgttgatgtggagacatgggtttgggttgtatt
aatatcatataataagagcttggcatttctgtttatgccaaacctttcat
gctagaacacaagcccctagagtgccaccattttctcctgcagtctagac
ttcttgtttccctgcctttatcattgattcctcttctctccctcttccct
tcgtgctcttttaaaaatgtccatctcttatgtagtgggggtttcaacta
tgtacagaggtttcctaactgctgtcatctctgggtccaaggacagttga
actaggccctgatgtcttgcctgtctgtcagtaacggattgtctgcttgg
acgatggatgagatgccccaccacaaaacccaccatgggttttgtagaac
tcgttctacaaaaagcctccagaagtgacagcagcctcgggcagagagag
gccccttctccccacggtaacggtgcaacccgcttccctagtgttggaat
gtctcagagtctgcttgatgcccctcgattaaccttgggaagttgccagg
caagcagtgctcgtggcagcctgcccctctgtccttttacttcacattcc
tcctttctatgagctcattgtgctaggtttcccatgaaactctcttttca
gagcctcaaatggcctcccctcaatctcctactaggcagctgtgcccaca
caagtctacaggctttccttttttactttgatttcttagaaagggaatag
aagttatcctctgtctgtcctctgtacttcatctc
gaattcaatttgagttcaccaagtccagtgcctgcatttttaaccacagc
aatagaaaacagaaagcaagcgagcctattccttggccttgaattaaaag
ccctcaactgaagacaaggctcagacagcacatgctgatccctctttcct
gaaatttagcatatccagcatccaaagagcccatcctttagctaggaaaa
aaaaaaaaaaaaaaaaaacctttccagtccctgtaaagaaagcattgctc
caaatgagccacattagcactctctgttttcagtatttatttctttatta
tttgctctaattatctagaaatctatattttaaccctaattgtctcccag
tggtcatgattaaggcatggctgaaatttgcattgcaaacaccaggaggc
cctcaacaacaagagcagcagatgaattctgaacttggcgactaacagcc
tttactgcttcattttcatgtcttcctggcttcattctggcccaaggttg
ttattattattatttttttcaggttccaaaggttgggaggggctagcatg
caggataacgatttcaagccttcactgactctatcaagtacatcaaattt
gaacttattgctgaaaccacatctttgaatacaaagctcaaggatcaggg
ccgcatgtacattttactaatgaatatttatagggccacccacagagtgc
acaatcttatacaagccactctatttatatgatggctatttgggaaaacc
aatgtggtcttagaaagagacatgctgtaggtaggatgcctttttatctc
tctctaggggagggtgaaagccttcatggatatttgctcttcttcacttc
tgttattttaaagtttttatttattttaaaaatagttacagcctagccag
gtaaataatattgctataaatcccatttaacttcttcccccctcactgga
ataggctcataaagacaacagaaactgcagaaattcatgaggatagattg
tcaatacagtgtgttttatttgaataaattgccatcagtataagagagcc
caattgagttaataaatcagtctcgaagagctgcatctagtaatcttatt
ctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_27095394_27096423
seq2: B6Ng01-091A22.b_47_1081

seq1  GAATTCTGCTGCGGCTGACCACAGACAACCCACATGCTGTGGTTCAGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGCGGCTGACCACAGACAACCCACATGCTGTGGTTCAGTGT  50

seq1  GTGTTAAGCTTATGCTTCCAGAAGGAGTGTCACACCTGCCCACAGAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAAGCTTATGCTTCCAGAAGGAGTGTCACACCTGCCCACAGAGCAG  100

seq1  AGTGGGTGGGCTTTGTAGTTATGCACATGCGGTGATTGGAGGGATTCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTGGGCTTTGTAGTTATGCACATGCGGTGATTGGAGGGATTCTGG  150

seq1  GTACCAATCTATGTGCAGAATGTCCTGCACCAATACATGGTGCACCAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAATCTATGTGCAGAATGTCCTGCACCAATACATGGTGCACCAATG  200

seq1  CATTTGCTCTGTCACACTTACCTATGTATGTCCTCTGCACTAGTGTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTCTGTCACACTTACCTATGTATGTCCTCTGCACTAGTGTTTGT  250

seq1  GTGGCTGTTGCTTTGTATGTTGATGTGGAGACATGGGTTTGGGTTGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGTTGCTTTGTATGTTGATGTGGAGACATGGGTTTGGGTTGTATT  300

seq1  AATATCATATAATAAGAGCTTGGCATTTCTGTTTATGCCAAACCTTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCATATAATAAGAGCTTGGCATTTCTGTTTATGCCAAACCTTTCAT  350

seq1  GCTAGAACACAAGCCCCTAGAGTGCCACCATTTTCTCCTGCAGTCTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAACACAAGCCCCTAGAGTGCCACCATTTTCTCCTGCAGTCTAGAC  400

seq1  TTCTTGTTTCCCTGCCTTTATCATTGATTCCTCTTCTCTCCCTCTTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTTCCCTGCCTTTATCATTGATTCCTCTTCTCTCCCTCTTCCCT  450

seq1  TCGTGCTCTTTTAAAAATGTCCATCTCTTATGTAGTGGGGGTTTCAACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCTCTTTTAAAAATGTCCATCTCTTATGTAGTGGGGGTTTCAACTA  500

seq1  TGTACAGAGGTTTCCTAACTGCTGTCATCTCTGGGTCCAAGGACAGTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGAGGTTTCCTAACTGCTGTCATCTCTGGGTCCAAGGACAGTTGA  550

seq1  ACTAGGCCCTGATGTCTTGCCTGTCTGTCAGTAACGGATTGTCTGCTTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGCCCTGATGTCTTGCCTGTCTGTCAGTAACGGATTGTCTGCTTGG  600

seq1  ACGATGGATGAGATGCCCCACCACAAAACCCACCATGGGTTTTGTAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATGGATGAGATGCCCCACCACAAAACCCACCATGGGTTTTGTAGAAC  650

seq1  TCGTTCTACAAAAAGCCTCCAGAAGTGACAGCAGCCTCGGGCAGAGAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTCTACAAAAAGCCTCCAGAAGTGACAGCAGCCTCGGGCAGAGAGAG  700

seq1  GCCCCTTCTCCCCACGGTAACGGTGCAACCCGCTTCCCTAGTGTTGGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTTCTCCCCACGGTAACGGTGCAACCCGCTTCCCTAGTGTTGGAAT  750

seq1  GTCTCAGAGTCTGCTTGATGCCCCTCGATTAACCTTGGGAAGTTGCCAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGAGTCTGCTTGATGCCCCTCGATTAACCTTGGGAAGTTGCCAGG  800

seq1  CAAGCAGTGCTCGTGGCAGCCTGCCCCTCTGTCCTTTTAACTTCACATTC  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAAGCAGTGCTCGTGGCAGCCTGCCCCTCTGTCCTTTT-ACTTCACATTC  849

seq1  CTCC-TTCTATGAGCTCATTGTGCTAGGTTTCCCATGAAACTCTCTTTTC  899
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTCTATGAGCTCATTGTGCTAGGTTTCCCATGAAACTCTCTTTTC  899

seq1  AGAGCCTCAAATGGCCTCCCCTCAATCTCCTACTAGGCAGCTGTGCCCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCTCAAATGGCCTCCCCTCAATCTCCTACTAGGCAGCTGTGCCCAC  949

seq1  ACAAGTCTACAGGCTTTCCCTTTTATAACTTGATTTCCTAGAAAGGG-AT  998
      ||||||||||||||||| |||||| ||  |||||||| ||||||||| ||
seq2  ACAAGTCTACAGGCTTT-CCTTTTTTACTTTGATTTCTTAGAAAGGGAAT  998

seq1  AGAGTTT---CTCTGTCTGT-CTCTGT-CTTCATCTC  1030
      |||  ||   |||||||||| |||||| |||||||||
seq2  AGAAGTTATCCTCTGTCTGTCCTCTGTACTTCATCTC  1035

seq1: chr9_27265710_27266832
seq2: B6Ng01-091A22.g_68_1172 (reverse)

seq1  AAAAG-ATAAGATTACTTAGATGCAGGCTTCTTCGAGACTGATTTTTATT  49
      ||||| |||||||||| |||||||||   |||||||||||||  ||||||
seq2  AAAAGAATAAGATTAC-TAGATGCAG--CTCTTCGAGACTGA--TTTATT  45

seq1  AACTCCAATGTGGGCTCTTCTTTATACCTGATTGTGCCATTTTATTTCCA  99
      |||| |||| ||||||||   ||||| ||||   || || ||||||  ||
seq2  AACT-CAAT-TGGGCTCT--CTTATA-CTGA---TGGCAATTTATT--CA  85

seq1  AAT-ACACACACTGTATTGACAATCTTATTCCCTCATTGAATTTTCTGCA  148
      ||| | ||||||||||||||||||| |||  ||||| |||| ||||||||
seq2  AATAAAACACACTGTATTGACAATC-TAT--CCTCA-TGAA-TTTCTGCA  130

seq1  GGTTTCTGTTGTCTTTTATGAGCCTATTCCAGTGAGGGGGGAAGAAGTTA  198
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  -GTTTCTGTTGTC-TTTATGAGCCTATTCCAGTGAGGGGGGAAGAAGTTA  178

seq1  AATGGGATTTATAGCAATA-TATTTACCTGGCTAGGCTGTAACTATTTTT  247
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AATGGGATTTATAGCAATATTATTTACCTGGCTAGGCTGTAACTATTTTT  228

seq1  AAAATAAAT-AAAACTTTAAAATAACAGAAGTGAAGAAGAGCAAATATCC  296
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATAAAAACTTTAAAATAACAGAAGTGAAGAAGAGCAAATATCC  278

seq1  ATGAAGGCTTTCACCCTCCCCTAGAGAGAGATAAAAAGGCATCCTACCTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGCTTTCACCCTCCCCTAGAGAGAGATAAAAAGGCATCCTACCTA  328

seq1  CAGCATGTCTCTTTCTAAGACCACATTGGTTTTCCCAAATAGCCATCATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATGTCTCTTTCTAAGACCACATTGGTTTTCCCAAATAGCCATCATA  378

seq1  TAAATAGAGTGGCTTGTATAAGATTGTGCACTCTGTGGGTGGCCCTATAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGAGTGGCTTGTATAAGATTGTGCACTCTGTGGGTGGCCCTATAA  428

seq1  ATATTCATTAGTAAAATGTACATGCGGCCCTGATCCTTGAGCTTTGTATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCATTAGTAAAATGTACATGCGGCCCTGATCCTTGAGCTTTGTATT  478

seq1  CAAAGATGTGGTTTCAGCAATAAGTTCAAATTTGATGTACTTGATAGAGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGTGGTTTCAGCAATAAGTTCAAATTTGATGTACTTGATAGAGT  528

seq1  CAGTGAAGGCTTGAAATCGTTATCCTGCATGCTAGCCCCTCCCAACCTTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGGCTTGAAATCGTTATCCTGCATGCTAGCCCCTCCCAACCTTT  578

seq1  GGAACCTGAAAAAAATAATAATAATAACAACCTTGGGCCAGAATGAAGCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTGAAAAAAATAATAATAATAACAACCTTGGGCCAGAATGAAGCC  628

seq1  AGGAAGACATGAAAATGAAGCAGTAAAGGCTGTTAGTCGCCAAGTTCAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACATGAAAATGAAGCAGTAAAGGCTGTTAGTCGCCAAGTTCAGA  678

seq1  ATTCATCTGCTGCTCTTGTTGTTGAGGGCCTCCTGGTGTTTGCAATGCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTGCTGCTCTTGTTGTTGAGGGCCTCCTGGTGTTTGCAATGCAA  728

seq1  ATTTCAGCCATGCCTTAATCATGACCACTGGGAGACAATTAGGGTTAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGCCATGCCTTAATCATGACCACTGGGAGACAATTAGGGTTAAAA  778

seq1  TATAGATTTCTAGATAATTAGAGCAAATAATAAAGAAATAAATACTGAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGATTTCTAGATAATTAGAGCAAATAATAAAGAAATAAATACTGAAA  828

seq1  ACAGAGAGTGCTAATGTGGCTCATTTGGAGCAATGCTTTCTTTACAGGGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAGTGCTAATGTGGCTCATTTGGAGCAATGCTTTCTTTACAGGGA  878

seq1  CTGGAAAGGTTTTTTTTTTTTTTTTTTTTTTCCTAGCTAAAGGATGGGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAGGTTTTTTTTTTTTTTTTTTTTTTCCTAGCTAAAGGATGGGCT  928

seq1  CTTTGGATGCTGGATATGCTAAATTTCAGGAAAGAGGGATCAGCATGTGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGATGCTGGATATGCTAAATTTCAGGAAAGAGGGATCAGCATGTGC  978

seq1  TGTCTGAGCCTTGTCTTCAGTTGAGGGCTTTTAATTCAAGGCCAAGGAAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGAGCCTTGTCTTCAGTTGAGGGCTTTTAATTCAAGGCCAAGGAAT  1028

seq1  AGGCTCGCTTGCTTTCTGTTTTCTATTGCTGTGGTTAAAAATGCAGGCAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCGCTTGCTTTCTGTTTTCTATTGCTGTGGTTAAAAATGCAGGCAC  1078

seq1  TGGACTTGGTGAACTCAAATTGAATTC  1123
      |||||||||||||||||||||||||||
seq2  TGGACTTGGTGAACTCAAATTGAATTC  1105