BAC Information

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BAC

Clone NameB6Ng01-091B12
Chromosome9 (Build37)
Map Location 41,453,388 - 41,590,988
singlet/doubletdoublet
Overlap geneEG667566
Upstream gene9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495, LOC100042464
Downstream gene6720432D03Rik, Sorl1, Sc5d, Tecta, Tbcel, Grik4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091B12.bB6Ng01-091B12.g
ACCDH903221DH903222
length1,1621,109
definitionDH903221|Mus musculus domesticus DNA, BAC clone: B6Ng01-091B12, 5' end.DH903222|Mus musculus domesticus DNA, BAC clone: B6Ng01-091B12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,453,388 - 41,454,578)(41,589,768 - 41,590,988)
sequence
gaattctccttaggccttggcctgtttcccttattgtcccccatgttccc
taagaacattttaaattaacctcttacatttaaatgccatctcccagaaa
acttcccagagaaggaagggatctactggacactctggacgttcttacat
tgttgacggaaaagactagcttatcacaaaataaaaaaaaatgagaattt
gaaggcatccaaggtccagattctggaacactctacccagaagaaggcat
taacttaagctgacggccaagtttagcaactgtcttacttcttgaccttg
ggtgactggtttatctttcctctgcacttctatgcttgtgtttacatgga
taatgaggtatctgataggatgaatgatgggaaagaaaaacgagcagaag
tcgagctcccctaaatgaccacagaactctatgagaacacaaattctgtg
gttcaaagctctcaatctagaatgccatagattaaactacttccttggag
gtagctcagccattttgtggactatgcaaccacagaattcctctggagac
ttggtcataccccaaatcttagcctaaacccccaagttgacacagattca
taggaatttggcaaagagttcacccaatttttccataaaattggacccca
aatgttgcctaggttggctgagagttcagtgagaagaagagagtccagaa
taaccaacagctaaatggtgatatttgaaactcaaagaactttggctttg
ctttaggggtaggagggaagtttcgaaccacagcataggatacaaatcct
ggctcaattcaaaacagttcctacttttgtcagtgattattacagctttg
cctctgactctagcacactatacttgtttcatggcaaagtcagttgaagg
aactccagagtcctgtatggtcaagtagagaggggaagtcacttctcatt
gtcagctattttctctaagaattatgcactttttgctctgttttcaaatc
tcatttaacatttctcaattctcttctctccagcctatacctcttgcttt
tttaaagcagtgtatgctttgtattttacctctgctcagtcatgcactat
gttcatggctaccatactaactccccactcgagaattattctaagagtgt
tttcaaccctgt
gaattcctacaagtggaggcaaacactcgcctctcaatttcaaggtgctt
atggcaaggttgataaaataagatcctgaagaatgggagtattccagcta
catattaggctcgtgttcattctggaggtgggtcagaggacttttctctt
tcacaaagcattttattaaaatgcatagaggggcactgactactgtaact
gcagccattacagcacagtaaactgaaatggacagaaaaagatactcata
ggaatttttctacatggtcatttaatagatatctccaggattctgggaat
ggctcaatggatactgtttctcttcacagtgacagggcttggattataat
ccctagaatccacacaaagctggacatggtactctatgtctgtaatcata
ggattctcaaggtgagatgtggggcagagacaggagaattccctgaagct
tgtagttagtaagcccagcacatacagcaataaacaacggctccaaagag
accctgcttcaaaaagagtgaaagataggactgatacccagtgctgccat
ctgacttccacatgcacatacccacaggcatgtgcagcacatgcgtgtgc
agaaaagagagacagaaacagagaggctagactgagagacagagagtcag
aggtctttattactttgcctgtgctaggcaggtggatggagaatttttag
cagctaactgtacaggtgaacatttagatgaaatctctcggcaaacttgc
aaggaattgatttcgtcctgatgtgctgaagttttccagtcactcatctt
ttaagtttgctttacttagatgaaagctgcagtgtcgtgtacccacaact
gaccatggcaacagacactgtctgccactgcccgtgggtaccctaggcag
attaaaggaaagacaggcactttacttagacccggttgcagctctggtag
tctcacctaggacttgggattatgttagactgtcttcttgccactgtggt
gaacacccatagaaccaatttaaggagatttctttggctcattgtttcag
agctttatttcatgatgctgttcactgaatgctttgcactgtgcaagaaa
ctctgtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_41453388_41454578
seq2: B6Ng01-091B12.b_46_1207

seq1  GAATTCTCCTTAGGCCTTGGCCTGTTTCCCTTATTGTCCCCCATGTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTAGGCCTTGGCCTGTTTCCCTTATTGTCCCCCATGTTCCC  50

seq1  TAAGAACATTTTAAATTAACCTCTTACATTTAAATGCCATCTCCCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACATTTTAAATTAACCTCTTACATTTAAATGCCATCTCCCAGAAA  100

seq1  ACTTCCCAGAGAAGGAAGGGATCTACTGGACACTCTGGACGTTCTTACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCAGAGAAGGAAGGGATCTACTGGACACTCTGGACGTTCTTACAT  150

seq1  TGTTGACGGAAAAGACTAGCTTATCACAAAATAAAAAAAAATGAGAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACGGAAAAGACTAGCTTATCACAAAATAAAAAAAAATGAGAATTT  200

seq1  GAAGGCATCCAAGGTCCAGATTCTGGAACACTCTACCCAGAAGAAGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCATCCAAGGTCCAGATTCTGGAACACTCTACCCAGAAGAAGGCAT  250

seq1  TAACTTAAGCTGACGGCCAAGTTTAGCAACTGTCTTACTTCTTGACCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTAAGCTGACGGCCAAGTTTAGCAACTGTCTTACTTCTTGACCTTG  300

seq1  GGTGACTGGTTTATCTTTCCTCTGCACTTCTATGCTTGTGTTTACATGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTGGTTTATCTTTCCTCTGCACTTCTATGCTTGTGTTTACATGGA  350

seq1  TAATGAGGTATCTGATAGGATGAATGATGGGAAAGAAAAACGAGCAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGGTATCTGATAGGATGAATGATGGGAAAGAAAAACGAGCAGAAG  400

seq1  TCGAGCTCCCCTAAATGACCACAGAACTCTATGAGAACACAAATTCTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGCTCCCCTAAATGACCACAGAACTCTATGAGAACACAAATTCTGTG  450

seq1  GTTCAAAGCTCTCAATCTAGAATGCCATAGATTAAACTACTTCCTTGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAAGCTCTCAATCTAGAATGCCATAGATTAAACTACTTCCTTGGAG  500

seq1  GTAGCTCAGCCATTTTGTGGACTATGCAACCACAGAATTCCTCTGGAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCAGCCATTTTGTGGACTATGCAACCACAGAATTCCTCTGGAGAC  550

seq1  TTGGTCATACCCCAAATCTTAGCCTAAACCCCCAAGTTGACACAGATTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCATACCCCAAATCTTAGCCTAAACCCCCAAGTTGACACAGATTCA  600

seq1  TAGGAATTTGGCAAAGAGTTCACCCAATTTTTCCATAAAATTGGACCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTTGGCAAAGAGTTCACCCAATTTTTCCATAAAATTGGACCCCA  650

seq1  AATGTTGCCTAGGTTGGCTGAGAGTTCAGTGAGAAGAAGAGAGTCCAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGCCTAGGTTGGCTGAGAGTTCAGTGAGAAGAAGAGAGTCCAGAA  700

seq1  TAACCAACAGCTAAATGGTGATATTTGAAACTCAAAGAACTTTGGCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAACAGCTAAATGGTGATATTTGAAACTCAAAGAACTTTGGCTTTG  750

seq1  CTTTAGGGGTAGGAGGGAAGTTTCGAACCACAGCATAGGATACAAATCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGGGTAGGAGGGAAGTTTCGAACCACAGCATAGGATACAAATCCT  800

seq1  GGCTCAATTCAAAACAGTTCCTACTTTTGTCAGTGATTATTACAGCTTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAATTCAAAACAGTTCCTACTTTTGTCAGTGATTATTACAGCTTTG  850

seq1  CCTCTGACTCTAGCACACTATACTTGTTTCAATGGCAAAGTCAGTTGAAG  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTCTGACTCTAGCACACTATACTTGTTTC-ATGGCAAAGTCAGTTGAAG  899

seq1  GAAACTCCAGAGTCCTGTATGGTCAAAGTAGAGAGGGGAAGTCACTTCTC  950
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  G-AACTCCAGAGTCCTGTATGGTC-AAGTAGAGAGGGGAAGTCACTTCTC  947

seq1  ATTGTCAGCTATTTCTCT-TAAGAATTTATGCCACTTTTTGCTCTGTTTT  999
      |||||||||||||| ||| |||||| ||||| ||||||||||||||||||
seq2  ATTGTCAGCTATTT-TCTCTAAGAA-TTATG-CACTTTTTGCTCTGTTTT  994

seq1  CAAATCTCATTTAACATTTCTCCAAATTCTCCTTCTCTCCCAGCCTTATA  1049
      ||||||||||||||||||||||  |||||| ||||||| |||||| ||||
seq2  CAAATCTCATTTAACATTTCTC--AATTCT-CTTCTCT-CCAGCC-TATA  1039

seq1  CCTCTTGCTTTTTTTAAAGCAGTTGTATGCTTTGTATTTCTACCTCTGCT  1099
      |||||||| ||||||||||||| |||||||||||||||| ||||||||||
seq2  CCTCTTGC-TTTTTTAAAGCAG-TGTATGCTTTGTATTT-TACCTCTGCT  1086

seq1  TCAAGTCCATGCAACTATGTTCAT-GCTAAACCATCACCTTACTCCCACA  1148
         ||| ||||| ||||||||||| |||  |||||   || |||||| ||
seq2  --CAGT-CATGC-ACTATGTTCATGGCT--ACCAT--ACTAACTCCC-CA  1127

seq1  CTCGAAGATTATTTCATAGAGATGGTTTTTTCAAAAACCCTGT  1191
      |||||  ||||||  |   |||  || |||||   ||||||||
seq2  CTCGAGAATTATTCTA---AGA--GTGTTTTC---AACCCTGT  1162

seq1: chr9_41589768_41590988
seq2: B6Ng01-091B12.g_68_1176 (reverse)

seq1  GTCACAGAGTATGTATCCTTTGTAGGGCTGTATCTTGCTTGTTTTTGTCC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTCTTATTTTAGGCTGATAAGGGGTCAAAAATGCTCTTCCACACATCCCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  ATTGTCACAAGGTGTTTCTTGCCACAGGTGCAAAGCA-TCAGTGACAGGC  149
         ||||||  | |||||||| |||| |||||||||| |||||||   ||
seq2  ---GTCACA--GAGTTTCTTG-CACA-GTGCAAAGCATTCAGTGAACAGC  43

seq1  AATCATGGAATAAAGCTCCTGAAACAATGAGCCAAAGAAATTCTCCCTTA  199
       |||||| ||||||||| |||||||||||||||||||||| ||| |||||
seq2  -ATCATGAAATAAAGCT-CTGAAACAATGAGCCAAAGAAA-TCT-CCTTA  89

seq1  AATTGGTTCTATTGGGTGTTCACCACAGTGGCAAG-AGACAGTCTAACAT  248
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  AATTGGTTCTA-TGGGTGTTCACCACAGTGGCAAGAAGACAGTCTAACAT  138

seq1  AATTCCCAAGTCCTAGGTGAGACTACCAGAGCTGCAACCGGGTCTTAGGT  298
      || ||||||||||||||||||||||||||||||||||||||||| || ||
seq2  AA-TCCCAAGTCCTAGGTGAGACTACCAGAGCTGCAACCGGGTC-TAAGT  186

seq1  AAAGTGCCTGTCCTTCCTTTAATCTGCCTAGGGTACCCACGGGCAGTGGC  348
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCCTGTCTTTCCTTTAATCTGCCTAGGGTACCCACGGGCAGTGGC  236

seq1  AGACAGTGTCTGTTGCCATGGTCAGTTGTGGGTACACGACACTGCAGCTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTGTCTGTTGCCATGGTCAGTTGTGGGTACACGACACTGCAGCTT  286

seq1  TCATCTAAGTAAAGCAAACTTAAAAGATGAGTGACTGGAAAACTTCAGCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTAAGTAAAGCAAACTTAAAAGATGAGTGACTGGAAAACTTCAGCA  336

seq1  CATCAGGACGAAATCAATTCCTTGCAAGTTTGCCGAGAGATTTCATCTAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGACGAAATCAATTCCTTGCAAGTTTGCCGAGAGATTTCATCTAA  386

seq1  ATGTTCACCTGTACAGTTAGCTGCTAAAAATTCTCCATCCACCTGCCTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCACCTGTACAGTTAGCTGCTAAAAATTCTCCATCCACCTGCCTAG  436

seq1  CACAGGCAAAGTAATAAAGACCTCTGACTCTCTGTCTCTCAGTCTAGCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCAAAGTAATAAAGACCTCTGACTCTCTGTCTCTCAGTCTAGCCT  486

seq1  CTCTGTTTCTGTCTCTCTTTTCTGCACACGCATGTGCTGCACATGCCTGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTTCTGTCTCTCTTTTCTGCACACGCATGTGCTGCACATGCCTGT  536

seq1  GGGTATGTGCATGTGGAAGTCAGATGGCAGCACTGGGTATCAGTCCTATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATGTGCATGTGGAAGTCAGATGGCAGCACTGGGTATCAGTCCTATC  586

seq1  TTTCACTCTTTTTGAAGCAGGGTCTCTTTGGAGCCGTTGTTTATTGCTGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTCTTTTTGAAGCAGGGTCTCTTTGGAGCCGTTGTTTATTGCTGT  636

seq1  ATGTGCTGGGCTTACTAACTACAAGCTTCAGGGAATTCTCCTGTCTCTGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCTGGGCTTACTAACTACAAGCTTCAGGGAATTCTCCTGTCTCTGC  686

seq1  CCCACATCTCACCTTGAGAATCCTATGATTACAGACATAGAGTACCATGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATCTCACCTTGAGAATCCTATGATTACAGACATAGAGTACCATGT  736

seq1  CCAGCTTTGTGTGGATTCTAGGGATTATAATCCAAGCCCTGTCACTGTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTGTGTGGATTCTAGGGATTATAATCCAAGCCCTGTCACTGTGA  786

seq1  AGAGAAACAGTATCCATTGAGCCATTCCCAGAATCCTGGAGATATCTATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACAGTATCCATTGAGCCATTCCCAGAATCCTGGAGATATCTATT  836

seq1  AAATGACCATGTAGAAAAATTCCTATGAGTATCTTTTTCTGTCCATTTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACCATGTAGAAAAATTCCTATGAGTATCTTTTTCTGTCCATTTCA  886

seq1  GTTTACTGTGCTGTAATGGCTGCAGTTACAGTAGTCAGTGCCCCTCTATG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTGTGCTGTAATGGCTGCAGTTACAGTAGTCAGTGCCCCTCTATG  936

seq1  CATTTTAATAAAATGCTTTGTGAAAGAGAAAAGTCCTCTGACCCACCTCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAATAAAATGCTTTGTGAAAGAGAAAAGTCCTCTGACCCACCTCC  986

seq1  AGAATGAACACGAGCCTAATATGTAGCTGGAATACTCCCATTCTTCAGGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAACACGAGCCTAATATGTAGCTGGAATACTCCCATTCTTCAGGA  1036

seq1  TCTTATTTTATCAACCTTGCCATAAGCACCTTGAAATTGAGAGGCGAGTG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTTATCAACCTTGCCATAAGCACCTTGAAATTGAGAGGCGAGTG  1086

seq1  TTTGCCTCCACTTGTAGGAATTC  1221
      |||||||||||||||||||||||
seq2  TTTGCCTCCACTTGTAGGAATTC  1109