BAC Information

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BAC

Clone NameB6Ng01-092M23
Chromosome9 (Build37)
Map Location 91,831,314 - 91,973,591
singlet/doubletdoublet
Overlap genenone
Upstream geneEG434428, LOC621576, Zic1, Zic4
Downstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092M23.bB6Ng01-092M23.g
ACCDH904467DH904468
length1,1671,138
definitionDH904467|Mus musculus domesticus DNA, BAC clone: B6Ng01-092M23, 5' end.DH904468|Mus musculus domesticus DNA, BAC clone: B6Ng01-092M23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,972,435 - 91,973,591)(91,831,314 - 91,832,453)
sequence
gaattcctttatagataataaatattacatctgagtgtgtctatgagaaa
gataagtcttgtgaaagagattactatttaaactagcagcctgagttaaa
actcaaactcactaaagtaagtggtcagcttccaatctgtgaggaacctg
actaaaacacaaagggcagagggggcggggatctctccctccctctcttg
ttctctctttcagtctccttctatctgtctctcatctctgtctaagagaa
agagagagagagagatgagacacagagagacagagtgtatccattttctt
ctgctctcagtcatcagagacacttgtctgtaagtcttcagagtatccag
tctcctgctctcagacatcagagtgttctttagtcttcagaatttccctt
gtagtatatcaactgcttttcccatttcactagtttgctacaaacctgga
acaactcattcttcacaataatgacttacttctcatagtaaatattcttt
caaataaccatacattgtggaatattcccagagttctaccttatcctgaa
tcttaataacttgagtctagaagtccagcctggacaataaattctcatca
ctaaaattcaaacaaagtaaacaaatatcctctaatgggctttcagtctt
gttcagtggtacagcacaagcaaagccagggattttattcctaaatgctg
gacaagcaaaagaaactttaattctaagtattaccatttcattttcagac
tccatttaatcatagggagaaactgaattcaaggtcccagaccctagggg
aactggggacttcccaataactgaacagcttctactaataaagggacagt
tgtctgcatctcaggacaacatctccctagggaaaccaacttctctctgg
ttggttttcagcttgctccacagaggtgaattcatatctactgttgtaaa
cctcatctgggggcaccatgggctttaaagaggaacccactactattatt
ttggaaatggatgtgctaaactacttctaatatctgttctgtatttatga
ctagtgcctctctccagcccttgatggaaagcttcttacactggagagtt
gttaggagcgaagttcatagctgactaatgtcctcagtgatagggcagaa
gtgtatgttcttaagtg
gaattcctttggttgttttccaatagatgtctttgttttacccagctgcc
cagttccctagttactcacaagcctcctcctcttcttcctaggctcttca
atagtatgccaccactctttctgtatagtgtcctacctgcgatttattga
ttctggaaatagctgcttggacacactctaagttccataggaatgctgtc
cttagcccttcctgtctcatgctatttttttctttctttgggataattat
cttaaatcacctcaccttcctcctaagagcttttgtagactgaaactata
tttttcagtattcctgatctgtatagcacatttttcaaaattgaccccaa
acacataaattcttgataaaaacatattttgcaacacagaatggccttct
gtaataaatgccattaatttcttttcacataatacaaactggattataag
tatggttttgtaactttttgccatgatgttcatattctctttagttcctt
ggaatataataatattaataacctattgtttttgttattgtcacagaatc
tattgaaggatatggaatatgattggcaacatacagttgttttaaattta
attctaacacattgaattgtttgcagttgaatagatttaaaaataagtag
gccatggtgaaatcaaggtacagaggatggtgtgcatgtggtctctctgc
catgtattaaattaaatatcttgtgttttctttagccagagaaagtttta
aatgaacaatttcttatgacattttttggagttcatggaggacttttgat
gtttgtagagagctatagacattaaggaattagaacttccacatgcacac
atacatataaacatagttattgagtagtcatggctaatgtttctgatatc
tgtgaatgttctatgagtgctctgacatctatgcacaaaccatcccaaat
gcacataatactgaaataaaaatgtgaagtctcctgcattttctgtgttt
gataaaaataaatttcctaagactaggattattttattttataaaaaaat
tgttattaataattgggttgcactgattacatggaagtggccatgaagag
aatgtcaattttggaactaaatctttttaatattttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_91972435_91973591
seq2: B6Ng01-092M23.b_62_1212 (reverse)

seq1  CACTTAAGAACATACAC-TCTGCCCTTATTCACTGTGGGCACTTTAGTCA  49
      ||||||||||||||||| ||||||||   |||||| ||  || |||||||
seq2  CACTTAAGAACATACACTTCTGCCCT--ATCACTGAGG--ACATTAGTCA  46

seq1  GCTATGAACTTCTGCT-CTAACAACTCTCAAGTGTAAGAAGCTTTTCCAT  98
      |||||||||||| ||| |||||||||||| |||||||||||| |||||||
seq2  GCTATGAACTTC-GCTCCTAACAACTCTCCAGTGTAAGAAGC-TTTCCAT  94

seq1  CAAGGGCTGG-GAGAAGCACTAGTCATAAATACAGAACAGATATTAGAAG  147
      |||||||||| |||| ||||||||||||||||||||||||||||||||| 
seq2  CAAGGGCTGGAGAGAGGCACTAGTCATAAATACAGAACAGATATTAGAA-  143

seq1  GTAGTTTAGCACATCCATTTCCCAAAATAATAGTAGTGGGTTCCTCTTTA  197
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTAGTTTAGCACATCCATTT-CCAAAATAATAGTAGTGGGTTCCTCTTTA  192

seq1  AAGCCCATGGTGCCCCCAGATGAGGTTTACAACAGTAGATATGAATTCAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCATGGTGCCCCCAGATGAGGTTTACAACAGTAGATATGAATTCAC  242

seq1  CTCTGTGGAGCAAGCCTGAAAACCAACCAGAGAGAAGTTGGTTTCCCTAG  297
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTCTGTGGAGCAAG-CTGAAAACCAACCAGAGAGAAGTTGGTTTCCCTAG  291

seq1  GGAGATGTTGTCCCTGAGATGCAGACAACTGTCCC-TTATTAGTAGAAGC  346
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  GGAGATGTTGT-CCTGAGATGCAGACAACTGTCCCTTTATTAGTAGAAGC  340

seq1  TGTTCAGTTATTGGGAAGTCCCCAGTTCCCCTAGGGTCTGGGACCTTGAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGTTATTGGGAAGTCCCCAGTTCCCCTAGGGTCTGGGACCTTGAA  390

seq1  TTCAGTTTCTCCCTATGATTAAATGGAGTCTGAAAATGAAATGGTAATAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTCTCCCTATGATTAAATGGAGTCTGAAAATGAAATGGTAATAC  440

seq1  TTAGAATTAAAGTTTCTTTTGCTTGTCCAGCATTTAGGAATAAAATCCCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTAAAGTTTCTTTTGCTTGTCCAGCATTTAGGAATAAAATCCCT  490

seq1  GGCTTTGCTTGTGCTGTACCACTGAACAAGACTGAAAGCCCATTAGAGGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGCTTGTGCTGTACCACTGAACAAGACTGAAAGCCCATTAGAGGA  540

seq1  TATTTGTTTACTTTGTTTGAATTTTAGTGATGAGAATTTATTGTCCAGGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTTACTTTGTTTGAATTTTAGTGATGAGAATTTATTGTCCAGGC  590

seq1  TGGACTTCTAGACTCAAGTTATTAAGATTCAGGATAAGGTAGAACTCTGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTCTAGACTCAAGTTATTAAGATTCAGGATAAGGTAGAACTCTGG  640

seq1  GAATATTCCACAATGTATGGTTATTTGAAAGAATATTTACTATGAGAAGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTCCACAATGTATGGTTATTTGAAAGAATATTTACTATGAGAAGT  690

seq1  AAGTCATTATTGTGAAGAATGAGTTGTTCCAGGTTTGTAGCAAACTAGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATTATTGTGAAGAATGAGTTGTTCCAGGTTTGTAGCAAACTAGTG  740

seq1  AAATGGGAAAAGCAGTTGATATACTACAAGGGAAATTCTGAAGACTAAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGAAAAGCAGTTGATATACTACAAGGGAAATTCTGAAGACTAAAG  790

seq1  AACACTCTGATGTCTGAGAGCAGGAGACTGGATACTCTGAAGACTTACAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCTGATGTCTGAGAGCAGGAGACTGGATACTCTGAAGACTTACAG  840

seq1  ACAAGTGTCTCTGATGACTGAGAGCAGAAGAAAATGGATACACTCTGTCT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGTCTCTGATGACTGAGAGCAGAAGAAAATGGATACACTCTGTCT  890

seq1  CTCTGTGTCTCATCTCTCTCTCTCTCTTTCTCTTAGACAGAGATGAGAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTCTCATCTCTCTCTCTCTCTTTCTCTTAGACAGAGATGAGAGA  940

seq1  CAGATAGAAGGAGACTGAAAGAGAGAACAAGAGAGGGAGGGAGAGATCCC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGAAGGAGACTGAAAGAGAGAACAAGAGAGGGAGGGAGAGATCCC  990

seq1  CGCCCCCTCTGCCCTTTGTGTTTTAGTCAGGTTCCTCACAGATTGGAAGC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCCTCTGCCCTTTGTGTTTTAGTCAGGTTCCTCACAGATTGGAAGC  1040

seq1  TGACCACTTACTTTAGTGAGTTTGAGTTTTAACTCAGGCTGCTAGTTTAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACTTACTTTAGTGAGTTTGAGTTTTAACTCAGGCTGCTAGTTTAA  1090

seq1  ATAGTAATCTCTTTCACAAGACTTATCTTTCTCATAGACACACTCAGATG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAATCTCTTTCACAAGACTTATCTTTCTCATAGACACACTCAGATG  1140

seq1  TAATATTTATT  1157
      |||||||||||
seq2  TAATATTTATT  1151

seq1: chr9_91831314_91832453
seq2: B6Ng01-092M23.g_67_1204

seq1  GAATTCCTTTGGTTGTTTTCCAATAGATGTCTTTGTTTTACCCAGCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTGGTTGTTTTCCAATAGATGTCTTTGTTTTACCCAGCTGCC  50

seq1  CAGTTCCCTAGTTACTCACAAGCCTCCTCCTCTTCTTCCTAGGCTCTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCCCTAGTTACTCACAAGCCTCCTCCTCTTCTTCCTAGGCTCTTCA  100

seq1  ATAGTATGCCACCACTCTTTCTGTATAGTGTCCTACCTGCGATTTATTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATGCCACCACTCTTTCTGTATAGTGTCCTACCTGCGATTTATTGA  150

seq1  TTCTGGAAATAGCTGCTTGGACACACTCTAAGTTCCATAGGAATGCTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAAATAGCTGCTTGGACACACTCTAAGTTCCATAGGAATGCTGTC  200

seq1  CTTAGCCCTTCCTGTCTCATGCTATTTTTTTCTTTCTTTGGGATAATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCCTTCCTGTCTCATGCTATTTTTTTCTTTCTTTGGGATAATTAT  250

seq1  CTTAAATCACCTCACCTTCCTCCTAAGAGCTTTTGTAGACTGAAACTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATCACCTCACCTTCCTCCTAAGAGCTTTTGTAGACTGAAACTATA  300

seq1  TTTTTCAGTATTCCTGATCTGTATAGCACATTTTTCAAAATTGACCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGTATTCCTGATCTGTATAGCACATTTTTCAAAATTGACCCCAA  350

seq1  ACACATAAATTCTTGATAAAAACATATTTTGCAACACAGAATGGCCTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATAAATTCTTGATAAAAACATATTTTGCAACACAGAATGGCCTTCT  400

seq1  GTAATAAATGCCATTAATTTCTTTTCACATAATACAAACTGGATTATAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAAATGCCATTAATTTCTTTTCACATAATACAAACTGGATTATAAG  450

seq1  TATGGTTTTGTAACTTTTTGCCATGATGTTCATATTCTCTTTAGTTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTTGTAACTTTTTGCCATGATGTTCATATTCTCTTTAGTTCCTT  500

seq1  GGAATATAATAATATTAATAACCTATTGTTTTTGTTATTGTCACAGAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATAATAATATTAATAACCTATTGTTTTTGTTATTGTCACAGAATC  550

seq1  TATTGAAGGATATGGAATATGATTGGCAACATACAGTTGTTTTAAATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAGGATATGGAATATGATTGGCAACATACAGTTGTTTTAAATTTA  600

seq1  ATTCTAACACATTGAATTGTTTGCAGTTGAATAGATTTAAAAATAAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAACACATTGAATTGTTTGCAGTTGAATAGATTTAAAAATAAGTAG  650

seq1  GCCATGGTGAAATCAAGGTACAGAGGATGGTGTGCATGTGGTCTCTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGTGAAATCAAGGTACAGAGGATGGTGTGCATGTGGTCTCTCTGC  700

seq1  CATGTATTAAATTAAATATCTTGTGTTTTCTTTAGCCAGAGAAAGTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATTAAATTAAATATCTTGTGTTTTCTTTAGCCAGAGAAAGTTTTA  750

seq1  AATGAACAATTTCTTATGACATTTTTTGGAGTTCATGGAGGACTTTTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAACAATTTCTTATGACATTTTTTGGAGTTCATGGAGGACTTTTGAT  800

seq1  GTTTGTAGAGAGCTATAGACATTAAGGAATTAGAACTTCCACATGCACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAGAGAGCTATAGACATTAAGGAATTAGAACTTCCACATGCACAC  850

seq1  ATACATATAAACATAGTTATTGAGTAGTCATGGCTAATGTTTCTGATATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATAAACATAGTTATTGAGTAGTCATGGCTAATGTTTCTGATATC  900

seq1  TGTGAATGTTCTATGAGTGCTCTGACATCTATGCACAAACCATCCCAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGTTCTATGAGTGCTCTGACATCTATGCACAAACCATCCCAAAT  950

seq1  GCACATAATACTGAAATAAATAATGTGAAGTCTCCTGCATTTTCTGTGTT  1000
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCACATAATACTGAAATAAA-AATGTGAAGTCTCCTGCATTTTCTGTGTT  999

seq1  TGATAAAAATAAATTTCAT-AGACTAGATTAATTTTATTTTATAAATAAA  1049
      ||||||||||||||||| | |||||||  | ||||||||||||||| |||
seq2  TGATAAAAATAAATTTCCTAAGACTAGGATTATTTTATTTTATAAAAAAA  1049

seq1  TTGTTATTATTAATT-GGTTGCA-TGATTACATGAAAGTGGCATTGAAGA  1097
      ||||||||| ||||| ||||||| |||||||||| |||||||  ||||||
seq2  TTGTTATTAATAATTGGGTTGCACTGATTACATGGAAGTGGCCATGAAGA  1099

seq1  GATGTTCAATTTTTGAACTAAATCTTTTTTAAATTTATTTTTA  1140
      ||   |||||||| ||||||||||||||| |    ||||||||
seq2  GAATGTCAATTTTGGAACTAAATCTTTTTAA----TATTTTTA  1138