BAC Information

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BAC

Clone NameB6Ng01-093G21
Chromosome9 (Build37)
Map Location 64,144,599 - 64,272,676
singlet/doubletdoublet
Overlap geneTipin, Dis3l, Megf11
Upstream geneMap2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009, Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4
Downstream geneRab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093G21.bB6Ng01-093G21.g
ACCDH904925DH904926
length1,126786
definitionDH904925|Mus musculus domesticus DNA, BAC clone: B6Ng01-093G21, 5' end.DH904926|Mus musculus domesticus DNA, BAC clone: B6Ng01-093G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,271,549 - 64,272,676)(64,144,599 - 64,145,380)
sequence
gaattcacttccagccaaggactctggcactatgacctcccagtctccct
cctgtggctgcactgtgctctgtgtcccatctgccacttcatcccaagct
gatgtagaagttactcatacagaatatctgtaataaacttagagaaaaaa
gatttctttcagttcgtgattccatagatctcaacccatcatctgttgat
tctgggttgggtggcagaacattgtagcaccagaagcacacggcagaggc
tcatgagagacagaaagtagaaaaagggaggatgtgggaagcgaccaggg
caagataagagtccccaagaacaagtttccaatgacctacttgttcccac
aaccttttctgccttttaccacctccaatccatcctattatgaacacatc
atagaattaatctactgattacatcggagctttcagggtccaatcacctc
ccaaaagccaacagctggcaaccgaactgtggacaactctaggttcaaac
ctcaagacctggcatcccttcaaacgtgcccccgaagtaagagactctcc
tcaccatactggacacctacagaggctctcttcctccctcaataaagcca
gacttagaactcagctcagagctgaagcagagaaaagcatgcatatgaaa
gaaaataggaatatgtcaaagggagggatggagaaatgggaaaagcaaag
attgttccttagccagcatgtacccatctgtagaagacagggcagtgggc
agtgtgccatccagggactggaagttgcctcagtcagagatgtgcttgct
gcacactacaaagacctgagtttgactcctcagcacccacaaaaatggtc
agtatagtgcctgtaaccccagtaatgtttgtaatgcactgaagaggcag
agacaggcggatacctggggcttgctgggcagtcagcttagctgagtgaa
tgtcttactcagagtttctattcccaacacaaaaacatcatgatcaagaa
gcaagttggggaggaaagggtttattcagcttattatttacatgttgctg
ttcatcacaaggaagttcaggactgggactcacacagcggaaacttgaga
acggaagcgaatgcaaggtcatggag
gaattcttttaaaagttggtatttattagtggtgtacaattccacacatg
ccaaaataattactatggtatgaaatgccagagcctgtattcctgggtta
gttgatttatttagcagcacttttttgaactattattgtgctgaaggctc
aaggataaaagatgaatgaaaataagcctctaagtttatagtgtacagag
tgagttagacaaataacattatcagtagtttgacaggtgttgtaattaga
tatgtgagtgaggtgcagtggacacaagttacattagctgggaagaagct
tcctagagaatgcatcccactgtttcagcagtacaggtcagctaaaggtg
gttttcagagccattcagaagaatcatgttgacatagaaagtacttaggg
aaggccttactcagagatctttattttctttcatcttttgcttccttgtt
tgaggcagaatcctgtctgaaacctgagtgctgggattccaactatgtat
gttgagcaaataaaccccaaacaaattgtgttttgggttggggagatgag
tcagtgggtaaagtgcttgctttataagcaaaaggactgagtttcgatca
ctagcacccatgtaaacaccaggagtagtaatgacataatcccaggagag
acaaggaaggacctaggacttgctgggcatccaatctacagtattgaagc
tctaggttcagtatgagaccttgcctcaaaaaatgagggggaaagctggg
cgtggtggcacgcgccttttaatcccagcactgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_64271549_64272676
seq2: B6Ng01-093G21.b_46_1171 (reverse)

seq1  CTCCATGACCTCTGCATCGGCTCCTGTCTCCAGGTTCCCGCCTTGTGTGA  50
      ||||||||||| |||||  ||| | ||   || ||| ||||  |||||||
seq2  CTCCATGACCT-TGCATTCGCTTCCGTTCTCAAGTTTCCGC--TGTGTGA  47

seq1  GTCCCAGTCCTG-ACTTCCTTTGGTGATGAACAGCAACATGTAAAT-ATA  98
      |||||||||||| ||||||||  ||||||||||||||||||||||| |||
seq2  GTCCCAGTCCTGAACTTCCTT--GTGATGAACAGCAACATGTAAATAATA  95

seq1  AGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGATCATGATGTTTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGATCATGATGTTTT  145

seq1  TGTG-TGGGAATAGAAACTCTGAGTAAGACATTCACTCAGCTAAGCTGAC  197
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGGGAATAGAAACTCTGAGTAAGACATTCACTCAGCTAAGCTGAC  195

seq1  TGCCCAGCAAGCCCCAGGTATCCGCCTGTCTCTGCCTCTTCAGTGCATTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCAAGCCCCAGGTATCCGCCTGTCTCTGCCTCTTCAGTGCATTA  245

seq1  CAAACATTACTGGGGTTACAGGCACTATACTGACCATTTTTGTGGGTGCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATTACTGGGGTTACAGGCACTATACTGACCATTTTTGTGGGTGCT  295

seq1  GAGGAGTCAAACTCAGGTCTTTGTAGTGTGCAGCAAGCACATCTCTGACT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGTCAAACTCAGGTCTTTGTAGTGTGCAGCAAGCACATCTCTGACT  345

seq1  GAGGCAACTTCCAGTCCCTGGATGGCACACTGCCCACTGCCCTGTCTTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAACTTCCAGTCCCTGGATGGCACACTGCCCACTGCCCTGTCTTCT  395

seq1  ACAGATGGGTACATGCTGGCTAAGGAACAATCTTTGCTTTTCCCATTTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGGGTACATGCTGGCTAAGGAACAATCTTTGCTTTTCCCATTTCT  445

seq1  CCATCCCTCCCTTTGACATATTCCTATTTTCTTTCATATGCATGCTTTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCTCCCTTTGACATATTCCTATTTTCTTTCATATGCATGCTTTTC  495

seq1  TCTGCTTCAGCTCTGAGCTGAGTTCTAAGTCTGGCTTTATTGAGGGAGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCAGCTCTGAGCTGAGTTCTAAGTCTGGCTTTATTGAGGGAGGA  545

seq1  AGAGAGCCTCTGTAGGTGTCCAGTATGGTGAGGAGAGTCTCTTACTTCGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCCTCTGTAGGTGTCCAGTATGGTGAGGAGAGTCTCTTACTTCGG  595

seq1  GGGCACGTTTGAAGGGATGCCAGGTCTTGAGGTTTGAACCTAGAGTTGTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACGTTTGAAGGGATGCCAGGTCTTGAGGTTTGAACCTAGAGTTGTC  645

seq1  CACAGTTCGGTTGCCAGCTGTTGGCTTTTGGGAGGTGATTGGACCCTGAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTCGGTTGCCAGCTGTTGGCTTTTGGGAGGTGATTGGACCCTGAA  695

seq1  AGCTCCGATGTAATCAGTAGATTAATTCTATGATGTGTTCATAATAGGAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCGATGTAATCAGTAGATTAATTCTATGATGTGTTCATAATAGGAT  745

seq1  GGATTGGAGGTGGTAAAAGGCAGAAAAGGTTGTGGGAACAAGTAGGTCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGGAGGTGGTAAAAGGCAGAAAAGGTTGTGGGAACAAGTAGGTCAT  795

seq1  TGGAAACTTGTTCTTGGGGACTCTTATCTTGCCCTGGTCGCTTCCCACAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACTTGTTCTTGGGGACTCTTATCTTGCCCTGGTCGCTTCCCACAT  845

seq1  CCTCCCTTTTTCTACTTTCTGTCTCTCATGAGCCTCTGCCGTGTGCTTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTTTTTCTACTTTCTGTCTCTCATGAGCCTCTGCCGTGTGCTTCT  895

seq1  GGTGCTACAATGTTCTGCCACCCAACCCAGAATCAACAGATGATGGGTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTACAATGTTCTGCCACCCAACCCAGAATCAACAGATGATGGGTTG  945

seq1  AGATCTATGGAATCACGAACTGAAAGAAATCTTTTTTCTCTAAGTTTATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTATGGAATCACGAACTGAAAGAAATCTTTTTTCTCTAAGTTTATT  995

seq1  ACAGATATTCTGTATGAGTAACTTCTACATCAGCTTGGGATGAAGTGGCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATTCTGTATGAGTAACTTCTACATCAGCTTGGGATGAAGTGGCA  1045

seq1  GATGGGACACAGAGCACAGTGCAGCCACAGGAGGGAGACTGGGAGGTCAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGACACAGAGCACAGTGCAGCCACAGGAGGGAGACTGGGAGGTCAT  1095

seq1  AGTGCCAGAGTCCTTGGCTGGAAGTGAATTC  1128
      |||||||||||||||||||||||||||||||
seq2  AGTGCCAGAGTCCTTGGCTGGAAGTGAATTC  1126

seq1: chr9_64144599_64145380
seq2: B6Ng01-093G21.g_68_853

seq1  GAATTCTTTTAAAAGTTGGTATTTATTAGTGGTGTACAATTCCACACATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAAAGTTGGTATTTATTAGTGGTGTACAATTCCACACATG  50

seq1  CCAAAATAATTACTATGGTATGAAATGCCAGAGCCTGTATTCCTGGGTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATAATTACTATGGTATGAAATGCCAGAGCCTGTATTCCTGGGTTA  100

seq1  GTTGATTTATTTAGCAGCACTTTTTTGAACTATTATTGTGCTGAAGGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTTATTTAGCAGCACTTTTTTGAACTATTATTGTGCTGAAGGCTC  150

seq1  AAGGATAAAAGATGAATGAAAATAAGCCTCTAAGTTTATAGTGTACAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATAAAAGATGAATGAAAATAAGCCTCTAAGTTTATAGTGTACAGAG  200

seq1  TGAGTTAGACAAATAACATTATCAGTAGTTTGACAGGTGTTGTAATTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAGACAAATAACATTATCAGTAGTTTGACAGGTGTTGTAATTAGA  250

seq1  TATGTGAGTGAGGTGCAGTGGACACAAGTTACATTAGCTGGGAAGAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGAGTGAGGTGCAGTGGACACAAGTTACATTAGCTGGGAAGAAGCT  300

seq1  TCCTAGAGAATGCATCCCACTGTTTCAGCAGTACAGGTCAGCTAAAGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGAGAATGCATCCCACTGTTTCAGCAGTACAGGTCAGCTAAAGGTG  350

seq1  GTTTTCAGAGCCATTCAGAAGAATCATGTTGACATAGAAAGTACTTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGAGCCATTCAGAAGAATCATGTTGACATAGAAAGTACTTAGGG  400

seq1  AAGGCCTTACTCAGAGATCTTTATTTTCTTTCATCTTTTGCTTCCTTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTTACTCAGAGATCTTTATTTTCTTTCATCTTTTGCTTCCTTGTT  450

seq1  TGAGGCAGAATCCTGTCTGAAACCTGAGTGCTGGGATTCCAACTATGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCAGAATCCTGTCTGAAACCTGAGTGCTGGGATTCCAACTATGTAT  500

seq1  GTTGAGCAAATAAACCCCAAACAAATTGTGTTTTGGGTTGGGGAGATGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCAAATAAACCCCAAACAAATTGTGTTTTGGGTTGGGGAGATGAG  550

seq1  TCAGTGGGTAAAGTGCTTGCTTTATAAGCAAAAGGACTGAGTTTCGATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGGTAAAGTGCTTGCTTTATAAGCAAAAGGACTGAGTTTCGATCA  600

seq1  CTAGCACCCATGTAAACACCAGGAGTAGTAATGACATAATCCCAGGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACCCATGTAAACACCAGGAGTAGTAATGACATAATCCCAGGAGAG  650

seq1  AC-AGGAAGGACCTAGGACTTGCTGGGCATCCAATCTACAGTATTG-AGC  698
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ACAAGGAAGGACCTAGGACTTGCTGGGCATCCAATCTACAGTATTGAAGC  700

seq1  TCTAGGTTCAGTATGAGACCTTGCCTCAAAAAATGAGGGGG-AAGCTGGG  747
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTAGGTTCAGTATGAGACCTTGCCTCAAAAAATGAGGGGGAAAGCTGGG  750

seq1  CGTGGTGGCACGCGCC-TTTAATCCCAGCACTGGGG  782
      |||||||||||||||| |||||||||||||||||||
seq2  CGTGGTGGCACGCGCCTTTTAATCCCAGCACTGGGG  786