BAC Information

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BAC

Clone NameB6Ng01-093P11
Chromosome9 (Build37)
Map Location 43,002,406 - 43,166,057
singlet/doubletdoublet
Overlap genePou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
Upstream geneSc5d, Tecta, Tbcel, Grik4, Arhgef12, LOC545339, Tmem136
Downstream geneLOC384931, Pvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093P11.bB6Ng01-093P11.g
ACCDH905309DH905310
length1,019175
definitionDH905309|Mus musculus domesticus DNA, BAC clone: B6Ng01-093P11, 5' end.DH905310|Mus musculus domesticus DNA, BAC clone: B6Ng01-093P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,165,033 - 43,166,057)(43,002,406 - 43,002,580)
sequence
gaattcagaagacgctcaagcgagctaaccttgagaaggctgtgtggatg
ggcgtaacatctttcgagtgggtgggcggcctgacaattcacttcctcca
gcagtgcgttatctcatctttgctacggtgtgtagacagggcttcgggaa
actgaggctcaaggcagggaaacaactcgtccttgtcccgtggctctgga
atcctggccccttgtgcagagctgatgtcagctcatggagatgggctggg
gacgcagcctgccttattccctagaagagtgcagctcaaggtgagggttt
ggagtggcaatgagaggagatggcttccagaggaggcaggcgctgtcctt
aagatgccaccagctccccaacttctaagaactggcgtttgtcaccctat
aggagaaaatttaagatgtaacttcccacataattgagaactacccccta
gctgttagaaacggagctagccaagggttctgagtggatttgctccacta
cacaggaaggtagcactgtgcccccaagctctcagctaagaaagagctag
atctcccgacccctacctccatcccccatcaggacatcaaactagatcca
ggctagggtgagagtcctcttccctgctccctatgtctggaccactgagg
ctgcccagacatgccaagttggagtggcaacaggtctgcctgccagtagc
caacatcctttccctcctccccacaaacaccacaggttggcaatgccaaa
acactgctttccatgccaggctaagctcatgcttctcaccatggacagaa
taggatgccagcagcctgagcctacccaagggctggcaggagactgacca
tactcagacaattccatttggctctttagcttctgcactgggaaaagaaa
actggctggagaagaggtgtcagaaatatggagtttgggtatcctggtcc
caactagtggggagacagtcatggttggcatgccccccatgcgtgtgtgt
gtgtgtgtgtgtgtgtgtg
acaaaaaacagcagctgccacaggaggaggtaggcttctgagcagttatg
gaaagggggtttgaggggtcgtgcagacagggtttccagagtctttcttg
gttgctagcaagacagacagagagagagagagagagagagagagagagag
agagagagagagagagggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_43165033_43166057
seq2: B6Ng01-093P11.b_44_1062 (reverse)

seq1  CACACACACACACACACACACACACACGCATGGGGGGGCATGCCAACCCA  50
      ||||||||||||||||||||||||||||||| |||||||||||||| |||
seq2  CACACACACACACACACACACACACACGCAT-GGGGGGCATGCCAA-CCA  48

seq1  TGACTGTCCTCCCCACTAAGTTGGGACCAAGGATACCCAAACTCCATATT  100
      ||||||| ||||||||| |||||||||| |||||||||||||||||||||
seq2  TGACTGT-CTCCCCACT-AGTTGGGACC-AGGATACCCAAACTCCATATT  95

seq1  TCTGACAACCTCTTCTCCAGCCAGTTTTCTTTTTCCAGTGCAGAAGCTAA  150
      |||||| |||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTGAC-ACCTCTTCTCCAGCCAGTTTTCTTTTCCCAGTGCAGAAGCTAA  144

seq1  AGAGCCAAATGGAATTGTCTGAGTATGGTCAGTCTCCTGCCAGCCCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAAATGGAATTGTCTGAGTATGGTCAGTCTCCTGCCAGCCCTTGG  194

seq1  GTAGGCTCAGGCTGCTGGCATCCTATTCTGTCCATGGTGAGAAGCATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTCAGGCTGCTGGCATCCTATTCTGTCCATGGTGAGAAGCATGAG  244

seq1  CTTAGCCTGGCATGGAAAGCAGTGTTTTGGCATTGCCAACCTGTGGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCTGGCATGGAAAGCAGTGTTTTGGCATTGCCAACCTGTGGTGTT  294

seq1  TGTGGGGAGGAGGGAAAGGATGTTGGCTACTGGCAGGCAGACCTGTTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGAGGAGGGAAAGGATGTTGGCTACTGGCAGGCAGACCTGTTGCC  344

seq1  ACTCCAACTTGGCATGTCTGGGCAGCCTCAGTGGTCCAGACATAGGGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAACTTGGCATGTCTGGGCAGCCTCAGTGGTCCAGACATAGGGAGC  394

seq1  AGGGAAGAGGACTCTCACCCTAGCCTGGATCTAGTTTGATGTCCTGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGAGGACTCTCACCCTAGCCTGGATCTAGTTTGATGTCCTGATGG  444

seq1  GGGATGGAGGTAGGGGTCGGGAGATCTAGCTCTTTCTTAGCTGAGAGCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGAGGTAGGGGTCGGGAGATCTAGCTCTTTCTTAGCTGAGAGCTT  494

seq1  GGGGGCACAGTGCTACCTTCCTGTGTAGTGGAGCAAATCCACTCAGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCACAGTGCTACCTTCCTGTGTAGTGGAGCAAATCCACTCAGAACC  544

seq1  CTTGGCTAGCTCCGTTTCTAACAGCTAGGGGGTAGTTCTCAATTATGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTAGCTCCGTTTCTAACAGCTAGGGGGTAGTTCTCAATTATGTGG  594

seq1  GAAGTTACATCTTAAATTTTCTCCTATAGGGTGACAAACGCCAGTTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTACATCTTAAATTTTCTCCTATAGGGTGACAAACGCCAGTTCTTA  644

seq1  GAAGTTGGGGAGCTGGTGGCATCTTAAGGACAGCGCCTGCCTCCTCTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTGGGGAGCTGGTGGCATCTTAAGGACAGCGCCTGCCTCCTCTGGA  694

seq1  AGCCATCTCCTCTCATTGCCACTCCAAACCCTCACCTTGAGCTGCACTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTCCTCTCATTGCCACTCCAAACCCTCACCTTGAGCTGCACTCT  744

seq1  TCTAGGGAATAAGGCAGGCTGCGTCCCCAGCCCATCTCCATGAGCTGACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGAATAAGGCAGGCTGCGTCCCCAGCCCATCTCCATGAGCTGACA  794

seq1  TCAGCTCTGCACAAGGGGCCAGGATTCCAGAGCCACGGGACAAGGACGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCTGCACAAGGGGCCAGGATTCCAGAGCCACGGGACAAGGACGAG  844

seq1  TTGTTTCCCTGCCTTGAGCCTCAGTTTCCCGAAGCCCTGTCTACACACCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCCTGCCTTGAGCCTCAGTTTCCCGAAGCCCTGTCTACACACCG  894

seq1  TAGCAAAGATGAGATAACGCACTGCTGGAGGAAGTGAATTGTCAGGCCGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAGATGAGATAACGCACTGCTGGAGGAAGTGAATTGTCAGGCCGC  944

seq1  CCACCCACTCGAAAGATGTTACGCCCATCCACACAGCCTTCTCAAGGTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACTCGAAAGATGTTACGCCCATCCACACAGCCTTCTCAAGGTTA  994

seq1  GCTCGCTTGAGCGTCTTCTGAATTC  1025
      |||||||||||||||||||||||||
seq2  GCTCGCTTGAGCGTCTTCTGAATTC  1019

seq1: chr9_43002406_43002580
seq2: B6Ng01-093P11.g_75_249

seq1  ACAAAAAACAGCAGCTGCCACAGGAGGAGGTAGGCTTCTGAGCAGTTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACAGCAGCTGCCACAGGAGGAGGTAGGCTTCTGAGCAGTTATG  50

seq1  GAAAGGGGGTTTGAGGGGTCGTGCAGACAGGGTTTCCAGAGTCTTTCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGGGGTTTGAGGGGTCGTGCAGACAGGGTTTCCAGAGTCTTTCTTG  100

seq1  GTTGCTAGCAAGACAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAGCAAGACAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  150

seq1  AGAGAGAGAGAGAGAGGGAGGGAGG  175
      |||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGGGAGGGAGG  175