BAC Information

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BAC

Clone NameB6Ng01-095A01
Chromosome9 (Build37)
Map Location 50,842,374 - 50,939,716
singlet/doubletdoublet
Overlap geneLayn, 4833427G06Rik, Btg4
Upstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2
Downstream geneLOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095A01.bB6Ng01-095A01.g
ACCDH906059DH906060
length1,0821,184
definitionDH906059|Mus musculus domesticus DNA, BAC clone: B6Ng01-095A01, 5' end.DH906060|Mus musculus domesticus DNA, BAC clone: B6Ng01-095A01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,938,717 - 50,939,716)(50,842,374 - 50,843,567)
sequence
gaattctctgcagggcttggctgaagcaccccaatcagtaagatgtcatc
tgaagctgaagtttccagggtgaattaaaggtcaggagagagaccatcag
tacatggaatatttgcaagaaaactttgaaatacaaactccaaattaaaa
acctaccaaaattacaaatccagtggctgcaattcgaacctttccttgtt
tggataattctttttatgcactgcaagatgaatagcagagatgatttttt
ttttatgtagcaactgttaaggagcgtccttggcaatgaaaggaaagtgg
actagttgaagattaaaacttcatgcaataggtttgtagacatccatgca
gtcctgagttcaatctccagtgcttgccccacaccaataaaacaataaac
gtctacacaaaccttacttgggtaactagtgaacagtaagtaatcaatac
gttcattggtttgctcattttgttttgtttgcccaatactgaggctcgaa
cccgggtccctacacacaggaagtcatgacccccaggccagtttgggcta
catgatgaaaccctgtttcaagatccaaacaaaaccacttgagacaccat
aagatttttttttaatttttaatatttttattacgtattttcctcaatta
catttccaatgctatcccaaaagttccccataccccccccccacttccct
acccacccattcccatttttttggccctggcgttcccctgtactggggca
tataaagtttgtgtgtccaatgggcctctctttccagtgatggccgacta
ggccatcttttgatacatatgcagctagagtcaagagctcccggggggta
ctggttaggtcataatgtgttctacctatagggttgcagatccctttagc
tccttgggtactttctctagctcctccattgggggccgtgtatccatcca
atagctgactgtgacatccactttatggtgtttgcttaggcccggcaatg
ttccacaaaagacagctttatctgggtcctttcagcaaatctgtagtgta
tgcaatgtgtcaggtttgaagctgaattatgg
gaattcaaaacaaactcagagttgctgccattacttctgttcatctttaa
ctatctttaggcaatgaaggcttatctaaattgactcctaaatctttcag
acaagactctaatacttttggataacttcccctgcccttttaaaatagtg
ggtctcactatttagccctagctggcctggaactcacgatgtagaacaga
gtaggctcaagctcccagtgatcctcctgtgatcctctgcctctgtctcc
caaattctgagattaaaggggactgtcactcggcccagcgaacacctgca
ctattaaacagaaaggcagaaccaccatgcttgccactgcctgagagatg
aagtcgtacctttcacgtgcgctgctcacaacctaatgcaagcaatttta
ttcctggtttaaaaaacgttttaacttgcatcattctttatttgtgaatt
gtttctctccttctaccacgtgggtcatggagatccatcaaaggtcatca
gctttggcagcaagcacctttccccactgcgccatctcctggcccccatt
tctgacttttatgatactgataactaggtgatgacctcacagatatgata
acaagccaaggaactagctggctgttcttggtaatatctcgagtttttcc
ctacaatgctgctttcttccttggagagtttagttgttctgtatgctgtc
ctttgggaaaatagtaaacgtaaaaattattgaagactttgtgtttgttt
ctcgtttcactctgggtattatggaagctgggtgaaaggcgctctgggtc
catttgctcaggcctagtttcatgtatgttcttaaattcccttataaaaa
ctaaaacagcaatggggcctttacaaagtgtctaagagatgttcctacag
agctctcctacaaggaggaaggacttagtctagttgtggcagtctccaca
ctttaaaagctactccggagctggtctcagtttaaagcccaagcagccag
tacaaatgacaagtctgctatctgctgctgaagatcaaggaaggtatctt
tttgtggtcatgaagctggagtttttttgacctcactagtgagattagaa
tcctcatgtcaatggcaatgaacggaactagagttctattatatttgcgt
gcatttggagagattgtaaaatagacctaaagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_50938717_50939716
seq2: B6Ng01-095A01.b_116_1110 (reverse)

seq1  CCATAA-TCAGCCTCCAAACGCTGACACCATTGCATACACTAGCAAGATT  49
      |||||| |||| || ||||| |||||| ||||||||||||||   ||| |
seq2  CCATAATTCAG-CTTCAAAC-CTGACA-CATTGCATACACTA--CAGA-T  44

seq1  TTGCTGAAAGGACCCAGATATAGCTGTCTCTTGTGAGACTATGCCGGGGC  99
      |||||||||||||||||||| |||||||| |||||  ||  ||||||| |
seq2  TTGCTGAAAGGACCCAGATAAAGCTGTCTTTTGTGGAACATTGCCGGGCC  94

seq1  CTAGCAAACA-CAT-AAGTGGATGTTCACAGTCAGCTATTGGATGGAATA  147
        |||||||| ||| ||||||||| ||||||||||||||||||||| |||
seq2  TAAGCAAACACCATAAAGTGGATG-TCACAGTCAGCTATTGGATGG-ATA  142

seq1  CACGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCCCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGA  192

seq1  TCTGCAACCCTATAGGTAGAACAACATTATGACCTAACCAGTACCCCCC-  246
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  TCTGCAACCCTATAGGTAGAAC-ACATTATGACCTAACCAGTACCCCCCG  241

seq1  GGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCC  291

seq1  ATCACTGGAAAGAGAGGCCCATTGGACACACAAACTTTATATGCCCCAGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTGGAAAGAGAGGCCCATTGGACACACAAACTTTATATGCCCCAGT  341

seq1  ACAGGGGAACGCCAGGGCCAAAAAAATGGGAATGGGTGGGTAGGGAAGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGAACGCCAGGGCCAAAAAAATGGGAATGGGTGGGTAGGGAAGTG  391

seq1  GGGGGGGGGTATGGGGAACTTTTGGGATAGCATTGGAAATGTAATTGAGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGGTATGGGGAACTTTTGGGATAGCATTGGAAATGTAATTGAGG  441

seq1  AAAATACGTAATAAAAATATTAAAAATTAAAAAAAAATCTTATGGTGTCT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACGTAATAAAAATATTAAAAATTAAAAAAAAATCTTATGGTGTCT  491

seq1  CAAGTGGTTTTGTTTGGATCTTGAAACAGGGTTTCATCATGTAGCCCAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGTTTTGTTTGGATCTTGAAACAGGGTTTCATCATGTAGCCCAAA  541

seq1  CTGGCCTGGGGGTCATGACTTCCTGTGTGTAGGGACCCGGGTTCGAGCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTGGGGGTCATGACTTCCTGTGTGTAGGGACCCGGGTTCGAGCCT  591

seq1  CAGTATTGGGCAAACAAAACAAAATGAGCAAACCAATGAACGTATTGATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTGGGCAAACAAAACAAAATGAGCAAACCAATGAACGTATTGATT  641

seq1  ACTTACTGTTCACTAGTTACCCAAGTAAGGTTTGTGTAGACGTTTATTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTGTTCACTAGTTACCCAAGTAAGGTTTGTGTAGACGTTTATTGT  691

seq1  TTTATTGGTGTGGGGCAAGCACTGGAGATTGAACTCAGGACTGCATGGAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGGTGTGGGGCAAGCACTGGAGATTGAACTCAGGACTGCATGGAT  741

seq1  GTCTACAAACCTATTGCATGAAGTTTTAATCTTCAACTAGTCCACTTTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAACCTATTGCATGAAGTTTTAATCTTCAACTAGTCCACTTTCC  791

seq1  TTTCATTGCCAAGGACGCTCCTTAACAGTTGCTACATAAAAAAAAAATCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTGCCAAGGACGCTCCTTAACAGTTGCTACATAAAAAAAAAATCA  841

seq1  TCTCTGCTATTCATCTTGCAGTGCATAAAAAGAATTATCCAAACAAGGAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCTATTCATCTTGCAGTGCATAAAAAGAATTATCCAAACAAGGAA  891

seq1  AGGTTCGAATTGCAGCCACTGGATTTGTAATTTTGGTAGGTTTTTAATTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCGAATTGCAGCCACTGGATTTGTAATTTTGGTAGGTTTTTAATTT  941

seq1  GGAGTTTGTATTTCAAAGTTTTCTTGCAAATATTCCATGTACTGATGGTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTGTATTTCAAAGTTTTCTTGCAAATATTCCATGTACTGATGGTC  991

seq1  TCTC  1000
      ||||
seq2  TCTC  995

seq1: chr9_50842374_50843567
seq2: B6Ng01-095A01.g_65_1248

seq1  GAATTCAAAACAAACTCAGAGTTGCTGCCATTACTTCTGTTCATCTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAACAAACTCAGAGTTGCTGCCATTACTTCTGTTCATCTTTAA  50

seq1  CTATCTTTAGGCAATGAAGGCTTATCTAAATTGACTCCTAAATCTTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTTTAGGCAATGAAGGCTTATCTAAATTGACTCCTAAATCTTTCAG  100

seq1  ACAAGACTCTAATACTTTTGGATAACTTCCCCTGCCCTTTTAAAATAGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACTCTAATACTTTTGGATAACTTCCCCTGCCCTTTTAAAATAGTG  150

seq1  GGTCTCACTATTTAGCCCTAGCTGGCCTGGAACTCACGATGTAGAACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCACTATTTAGCCCTAGCTGGCCTGGAACTCACGATGTAGAACAGA  200

seq1  GTAGGCTCAAGCTCCCAGTGATCCTCCTGTGATCCTCTGCCTCTGTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTCAAGCTCCCAGTGATCCTCCTGTGATCCTCTGCCTCTGTCTCC  250

seq1  CAAATTCTGAGATTAAAGGGGACTGTCACTCGGCCCAGCGAACACCTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTGAGATTAAAGGGGACTGTCACTCGGCCCAGCGAACACCTGCA  300

seq1  CTATTAAACAGAAAGGCAGAACCACCATGCTTGCCACTGCCTGAGAGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAACAGAAAGGCAGAACCACCATGCTTGCCACTGCCTGAGAGATG  350

seq1  AAGTCGTACCTTTCACGTGCGCTGCTCACAACCTAATGCAAGCAATTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGTACCTTTCACGTGCGCTGCTCACAACCTAATGCAAGCAATTTTA  400

seq1  TTCCTGGTTTAAAAAACGTTTTAACTTGCATCATTCTTTATTTGTGAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGTTTAAAAAACGTTTTAACTTGCATCATTCTTTATTTGTGAATT  450

seq1  GTTTCTCTCCTTCTACCACGTGGGTCATGGAGATCCATCAAAGGTCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTCCTTCTACCACGTGGGTCATGGAGATCCATCAAAGGTCATCA  500

seq1  GCTTTGGCAGCAAGCACCTTTCCCCACTGCGCCATCTCCTGGCCCCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCAGCAAGCACCTTTCCCCACTGCGCCATCTCCTGGCCCCCATT  550

seq1  TCTGACTTTTATGATACTGATAACTAGGTGATGACCTCACAGATATGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTTTATGATACTGATAACTAGGTGATGACCTCACAGATATGATA  600

seq1  ACAAGCCAAGGAACTAGCTGGCTGTTCTTGGTAATATCTCGAGTTTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCCAAGGAACTAGCTGGCTGTTCTTGGTAATATCTCGAGTTTTTCC  650

seq1  CTACAATGCTGCTTTCTTCCTTGGAGAGTTTAGTTGTTCTGTATGCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATGCTGCTTTCTTCCTTGGAGAGTTTAGTTGTTCTGTATGCTGTC  700

seq1  CTTTGGGAAAATAGTAAACGTAAAAATTATTGAAGACTTTGTGTTTGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGAAAATAGTAAACGTAAAAATTATTGAAGACTTTGTGTTTGTTT  750

seq1  CTCGTTTCACTCTGGGTAATTATGGAAGCTGGGTGAAAGGCGCTCTGGGT  800
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCGTTTCACTCTGGGT-ATTATGGAAGCTGGGTGAAAGGCGCTCTGGGT  799

seq1  CCATTTGCTCAGGCCTAGTTTCATGTATGTTCTTAAATTCCCTTAATAAA  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCATTTGCTCAGGCCTAGTTTCATGTATGTTCTTAAATTCCCTT-ATAAA  848

seq1  AACTAAAACAGCAATGGGGCCTTTACAAAGTGTCTAAGAGATGTTTCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACTAAAACAGCAATGGGGCCTTTACAAAGTGTCTAAGAGATG-TTCCTA  897

seq1  CAGAGCTCTCCTACAAAGAGGAAGGACTTAGTCTAG-TGTGGCAGTCTCC  949
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  CAGAGCTCTCCTACAAGGAGGAAGGACTTAGTCTAGTTGTGGCAGTCTCC  947

seq1  ACACTTTAAAGGCTACTCCGAGGCTGTTCTCAGTTTTAAAGCCCAAGCAG  999
      |||||||||| |||||||||  |||| |||||| ||||||||||||||||
seq2  ACACTTTAAAAGCTACTCCGGAGCTGGTCTCAG-TTTAAAGCCCAAGCAG  996

seq1  CCAGTACAAATGACAAAGTTCTGCTATCTGCTGCTGAAGATCAAGGAAGG  1049
      ||||||||||||||||   |||||||||||||||||||||||||||||||
seq2  CCAGTACAAATGACAA--GTCTGCTATCTGCTGCTGAAGATCAAGGAAGG  1044

seq1  TTATC-TTTTGTGGTCATGAAGCTGGAGTTTTTTTGACCTCACTAGTGAG  1098
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  -TATCTTTTTGTGGTCATGAAGCTGGAGTTTTTTTGACCTCACTAGTGAG  1093

seq1  ATTAGAATCCTCCATGTCAAATGGCAATGAAAGGAACTAGAGTTTCTATA  1148
      ||||||||||| |||||| |||||||||||| |||||||||| |||||| 
seq2  ATTAGAATCCT-CATGTC-AATGGCAATGAACGGAACTAGAG-TTCTATT  1140

seq1  TTATTTGC-TGCATTTGGAGAGTATGTAAAAAATAGACTCAAAAGCC  1194
       ||||||| |||||||||||||  |||  ||||||||| | ||||||
seq2  ATATTTGCGTGCATTTGGAGAGATTGT--AAAATAGAC-CTAAAGCC  1184