BAC Information

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BAC

Clone NameB6Ng01-096I07
Chromosome9 (Build37)
Map Location 24,509,500 - 24,613,927
singlet/doubletdoublet
Overlap geneTbx20
Upstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4
Downstream geneLOC666251, LOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096I07.bB6Ng01-096I07.g
ACCDH907147DH907148
length1,1381,030
definitionDH907147|Mus musculus domesticus DNA, BAC clone: B6Ng01-096I07, 5' end.DH907148|Mus musculus domesticus DNA, BAC clone: B6Ng01-096I07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,612,766 - 24,613,927)(24,509,500 - 24,510,311)
sequence
gaattcaaacaagaatgcagattttgttcacagtttctagttgattgccc
tatacagcattaacgatctatcaaaaatagatgaaccgttccagttagaa
ccccccttcctcccctaatttatttaaaatggcacgacacacatagtcta
ataataaacttgtaatgatctaggaaacaggggaggaggggttccagaga
gtttctggaagagagagtaagatgaaagtaataaagaccgtagagtagag
aagaggacctctcagaccagcagcaatgagtcaggatgcattgaacagca
ctgctgatcccaagccttctaggacctccatggctggagtacaaacccag
ggttccgggcagcccccacacagaccagcctcaggagaaaagacaatgaa
agcagcccatgcaagtgcagggtctatggcctctgcacatttctgcatgc
tggcccatggccctaacttcttgtccctaagaacacttcctttggtagca
gatctctctgcaggaaagagaaagaggagttctcaatttgaaaggaagga
aatgaggaacagaaggggagggaagaaagctgacattttcagggatcaac
cctagatcagtcggtctcaaccttcctcattcagtggctcaatacagttc
ctcatgttattgggaccccccaaccataaaattatttcatggctactttt
ataactgtgattttgctactgttatgaatcataaggtagatatctgtgtt
ttccaaaggtcttaggtgaccctgtgaaagggtgattcaacccccaaagg
ttgagtggtctagaagtttttaagtaacaggataagatctgtctctggca
agcttcttggagtctgccttaccttctctcgggatataaacacacctgtc
agcagtctgactcacagtcatctcttccattcatggaaagaacttatgga
catgatatgcataggaaggaaactcctgtcatcacgtaagagagcctgga
gattccctgacagttgagaaacacatgctcccgctgaggggccccagcca
catgcttactgagaagcgatgatgcaagacacagccttaactattttttc
ctatacgtttcagaccttcagggaatttctttatgaaa
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcatatcaaaacaaccctgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaaaattccattttgcattagctaacaactcct
gtacatggggcctgccctggaatgcagtgttcttaaccggtatcaatcat
agataatttcatggtattccaccaaactggaaaacctacaagaaatcgat
gaatgttttagcaaatataatctatggaagttaaatcaagatgaaataaa
caatttaaactaactcatagctcacagtaaaatagaagcaataattaaaa
ttctcccaagcaggggcagaagaggtcacccagtggtttagagcactggc
tgttcctccagaaggtcagggtttgattcccaccacccacatggcagctc
aaagctgttctaattccaggtccaggaaccaatgccctctgctggcctcc
gtgggcaccaggcacaaacatggaatgcagacatacatgaagataagcat
ctgtacacatacattctaacttaatggagacaaacaaacataaaaaactc
ccaaacaaaaaagcctagactttaaacagagaactaatgccaatagtcct
cgtgtaattccttaaaatagagagataacatttcctaatcctccttatga
tttcacaattatcctgaaaccaaagccacataaaggaaaaaaggtaatta
gacatcaatatcctttatgaacataaatgtaaaaattcccgattaaatac
ttataaattgaattcaagaacacatcaaaatattttctactatgagccag
aaaaatggatcaaacattgactactcttccagaggacctggattaggttc
ccagaacccatataacagcttacacatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_24612766_24613927
seq2: B6Ng01-096I07.b_44_1181 (reverse)

seq1  TTTCATAAAGGAAAAATCCCCCTGAAAGTTCCTGAAACGTTATTTAGGGA  50
      ||||||||||   ||||  ||||||| ||  |||||||| |||    |||
seq2  TTTCATAAAG---AAAT-TCCCTGAAGGT--CTGAAACG-TAT---AGGA  40

seq1  AAAAATAGTTAAGGCTGTGTCTTGCCATCCATCGCTTTCTTCACGTAGCA  100
      |||||||||||||||||||||||| ||| ||||||||   |||   ||||
seq2  AAAAATAGTTAAGGCTGTGTCTTG-CAT-CATCGCTT--CTCAGTAAGCA  86

seq1  TTGTTGGCTGGGGCCCCCTCAGCCGGGAGCATTGTGTTTCTCAACTGTCA  150
      |   ||||||||| |||||||| |||||||| ||||||||||||||||||
seq2  T--GTGGCTGGGG-CCCCTCAG-CGGGAGCA-TGTGTTTCTCAACTGTCA  131

seq1  GGG-ATCTCCAGGCTCCTCCTTACGTTGATGACAGGAGTTTCCTTCCTAT  199
      ||| ||||||||||||   |||||| ||||||||||||||||||||||||
seq2  GGGAATCTCCAGGCTC--TCTTACG-TGATGACAGGAGTTTCCTTCCTAT  178

seq1  GCATATCATGTCCATAAGTTCTTTTCCATGAATGGAAGAGATGACTGTGA  249
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCATATCATGTCCATAAGTTC-TTTCCATGAATGGAAGAGATGACTGTGA  227

seq1  GTCAGACCTGCTGACAGGTGTGTTTATATCCCGAGAGAAGGTAAGGCAGA  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGA-CTGCTGACAGGTGTGTTTATATCCCGAGAGAAGGTAAGGCAGA  276

seq1  CTCCAAGAAGCTTGCCAGAGACAGATCTTATCCTGTTACTTAAAAACCTT  349
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTCCAAGAAGCTTGCCAGAGACAGATCTTATCCTGTTACTTAAAAA-CTT  325

seq1  CTAGACCACTCAACCTTTGGGGGTTGAATCACCCTTTCACAGGGTCACCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCACTCAACCTTTGGGGGTTGAATCACCCTTTCACAGGGTCACCT  375

seq1  AAGACCTTTGGAAAACACAGATATCTACCTTATGATTCATAACAGTAGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCTTTGGAAAACACAGATATCTACCTTATGATTCATAACAGTAGCA  425

seq1  AAATCACAGTTATAAAAGTAGCCATGAAATAATTTTATGGTTGGGGGGTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACAGTTATAAAAGTAGCCATGAAATAATTTTATGGTTGGGGGGTC  475

seq1  CCAATAACATGAGGAACTGTATTGAGCCACTGAATGAGGAAGGTTGAGAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAACATGAGGAACTGTATTGAGCCACTGAATGAGGAAGGTTGAGAC  525

seq1  CGACTGATCTAGGGTTGATCCCTGAAAATGTCAGCTTTCTTCCCTCCCCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGATCTAGGGTTGATCCCTGAAAATGTCAGCTTTCTTCCCTCCCCT  575

seq1  TCTGTTCCTCATTTCCTTCCTTTCAAATTGAGAACTCCTCTTTCTCTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCCTCATTTCCTTCCTTTCAAATTGAGAACTCCTCTTTCTCTTTC  625

seq1  CTGCAGAGAGATCTGCTACCAAAGGAAGTGTTCTTAGGGACAAGAAGTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGAGATCTGCTACCAAAGGAAGTGTTCTTAGGGACAAGAAGTTA  675

seq1  GGGCCATGGGCCAGCATGCAGAAATGTGCAGAGGCCATAGACCCTGCACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATGGGCCAGCATGCAGAAATGTGCAGAGGCCATAGACCCTGCACT  725

seq1  TGCATGGGCTGCTTTCATTGTCTTTTCTCCTGAGGCTGGTCTGTGTGGGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGGGCTGCTTTCATTGTCTTTTCTCCTGAGGCTGGTCTGTGTGGGG  775

seq1  GCTGCCCGGAACCCTGGGTTTGTACTCCAGCCATGGAGGTCCTAGAAGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCGGAACCCTGGGTTTGTACTCCAGCCATGGAGGTCCTAGAAGGC  825

seq1  TTGGGATCAGCAGTGCTGTTCAATGCATCCTGACTCATTGCTGCTGGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATCAGCAGTGCTGTTCAATGCATCCTGACTCATTGCTGCTGGTCT  875

seq1  GAGAGGTCCTCTTCTCTACTCTACGGTCTTTATTACTTTCATCTTACTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTCCTCTTCTCTACTCTACGGTCTTTATTACTTTCATCTTACTCT  925

seq1  CTCTTCCAGAAACTCTCTGGAACCCCTCCTCCCCTGTTTCCTAGATCATT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGAAACTCTCTGGAACCCCTCCTCCCCTGTTTCCTAGATCATT  975

seq1  ACAAGTTTATTATTAGACTATGTGTGTCGTGCCATTTTAAATAAATTAGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTTATTATTAGACTATGTGTGTCGTGCCATTTTAAATAAATTAGG  1025

seq1  GGAGGAAGGGGGGTTCTAACTGGAACGGTTCATCTATTTTTGATAGATCG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAGGGGGGTTCTAACTGGAACGGTTCATCTATTTTTGATAGATCG  1075

seq1  TTAATGCTGTATAGGGCAATCAACTAGAAACTGTGAACAAAATCTGCATT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCTGTATAGGGCAATCAACTAGAAACTGTGAACAAAATCTGCATT  1125

seq1  CTTGTTTGAATTC  1162
      |||||||||||||
seq2  CTTGTTTGAATTC  1138

seq1: chr9_24509500_24510311
seq2: B6Ng01-096I07.g_68_879

seq1  GAATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCTGAGAAGCACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGCATATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGCATATCAAAACAACCCTGAGAT  100

seq1  TCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAACTCAGGTGACAGC  150

seq1  AGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGCGAGGATGTGGAGAAAGGGGAACACTCCTCCATTGTTGGTG  200

seq1  GGATTGCAAGCTTGTACAAAAATTCCATTTTGCATTAGCTAACAACTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCAAGCTTGTACAAAAATTCCATTTTGCATTAGCTAACAACTCCT  250

seq1  GTACATGGGGCCTGCCCTGGAATGCAGTGTTCTTAACCGGTATCAATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGGGGCCTGCCCTGGAATGCAGTGTTCTTAACCGGTATCAATCAT  300

seq1  AGATAATTTCATGGTATTCCACCAAACTGGAAAACCTACAAGAAATCGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATTTCATGGTATTCCACCAAACTGGAAAACCTACAAGAAATCGAT  350

seq1  GAATGTTTTAGCAAATATAATCTATGGAAGTTAAATCAAGATGAAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTTAGCAAATATAATCTATGGAAGTTAAATCAAGATGAAATAAA  400

seq1  CAATTTAAACTAACTCATAGCTCACAGTAAAATAGAAGCAATAATTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAACTAACTCATAGCTCACAGTAAAATAGAAGCAATAATTAAAA  450

seq1  TTCTCCCAAGCAGGGGCAGAAGAGGTCACCCAGTGGTTTAGAGCACTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCAAGCAGGGGCAGAAGAGGTCACCCAGTGGTTTAGAGCACTGGC  500

seq1  TGTTCCTCCAGAAGGTCAGGGTTTGATTCCCACCACCCACATGGCAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCCAGAAGGTCAGGGTTTGATTCCCACCACCCACATGGCAGCTC  550

seq1  AAAGCTGTTCTAATTCCAGGTCCAGGAACCAATGCCCTCTGCTGGCCTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTTCTAATTCCAGGTCCAGGAACCAATGCCCTCTGCTGGCCTCC  600

seq1  GTGGGCACCAGGCACAAACATGGAATGCAGACATACATGAAGATAAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCACCAGGCACAAACATGGAATGCAGACATACATGAAGATAAGCAT  650

seq1  CTGTACACATACATTCTAACTTAATGGAGACAAACAAACATAAAAAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACACATACATTCTAACTTAATGGAGACAAACAAACATAAAAAACTC  700

seq1  CCAAACAAAAAAGCCTAGACTTTAAACAGAGAACTAATGCCAATAGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACAAAAAAGCCTAGACTTTAAACAGAGAACTAATGCCAATAGTCCT  750

seq1  CGTGTAATTCCTTAAAATAGAGAGATAACATTTCCTAATCCTCCTTATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTAATTCCTTAAAATAGAGAGATAACATTTCCTAATCCTCCTTATGA  800

seq1  TTTCACAATTAT  812
      ||||||||||||
seq2  TTTCACAATTAT  812