BAC Information

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BAC

Clone NameB6Ng01-097G17
Chromosome9 (Build37)
Map Location 11,538,180 - 11,674,907
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665178
Downstream geneLOC100039989, LOC622505, LOC100039680
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097G17.bB6Ng01-097G17.g
ACCDH907801DH907802
length8451,022
definitionDH907801|Mus musculus domesticus DNA, BAC clone: B6Ng01-097G17, 5' end.DH907802|Mus musculus domesticus DNA, BAC clone: B6Ng01-097G17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,674,072 - 11,674,907)(11,538,180 - 11,539,187)
sequence
gaattccatattcagatggattaatttctttatagacagaagactcagta
ttcttcccatccttcggtgcttggaacagttcctgacaacccaaggtcag
agggaaacatcataaggacagagactacggctcagatgatttatgtttaa
aatattgagtacacatctactatcttctgggccaaatgcccaacatatat
gccaacatttagaaagagagacccatgggttatggagaggcaagtaggtt
ttgacaatgaatattatttgttataataatcatattgtgaaaaaagtaaa
acattactttatttctaaaactaaattctcaactaaaatatgcattgttg
tttataaaaacctcaagaaaataaaaaaaatcatactatattaagaatat
tgttgtagtaaggagaaatatattatttactccatatcaaaggttaattc
aggggctgtgcaatcatattaattcaatcatttcaaagagctcggggggg
ggggggagcagtaaactaacagtgaaggaattgagtagtgtgtcaatcat
caaatagagcacagctacaatgcctgtgtctataactaattcatccagct
cttgtccttgctgtgacacccacttgctcttcagtgatagcttattgtca
ttgctgatggtgatcatgcctgtagcatttttatgcaattatgggctact
gttttatacaggtatactgaacactcagtttggttaaacatgtaatatac
aatatactataggcttaatcttgtaatttcaccaattcttatgtagaaat
tgaagttgaatgcttttaaaaaaggaaatttagctgcaagtgtca
gaattctaatgagagtgagaaagaaagggtttggatatgaatggatgagc
aaatgtggaagatcttgaaagaactgggaaaagaaaaattaaaatcagga
tatattgtttgaaaaaattatcttaattaaaaatacatcatgatcactga
aagaattaaatttaacaatttaaatgtcataaaatattactttatttctt
attagaataaatacgtagtacattcatggcatatgcagcatgtgtattaa
actctgcattatttgcattgtgcttgattatttaaaagactcatgacaac
acagtttatattatgacttccattcttaatagtgaatgtaaaagaaaata
tgcaataatatgcattcctgtgtctgttttcttttgcctccatttaggtg
cataaaacatattttcagaagtcttgaagagaaagtgcagcagtattgct
tcacaaactctgtaactccagtttgagtagatcccactcactcttgtggc
ctctgtagccatctacacacacacacacacacacacacacacacacacac
acacacacacacaaattaatgacaaaaaaaaatcaaaaaccaaaactttg
tgtcggggagggcgcatttcgagacaacgtttctctgtttagccctggct
gtcctggaactcactctgtagaccaggctggcctcaaaatcagaaatatc
ttacaacaattacttttataaggtttttcaagccatctttaattaaaccc
tagcagtgattttttttctaggttttttgctttcactcagtcatgttttt
gttaattttacaatatcatacatgttttccttgtcttttgtatccaaaat
atatggtgctttcagtaataaggtcttatagttgtccaaaagggatgaca
agagattttatttttagagtagttgcaattccccctaaccaacagtattc
atatctgggtacttaaaggtttttggttttggtgtgttgtgtttgttggt
ttgttttgtttggtttgttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_11674072_11674907
seq2: B6Ng01-097G17.b_44_888 (reverse)

seq1  TGACACTTGCAGCTAAATTTCC-TTTTTAAAAGCATTC-ACTTC-AGTTC  47
      |||||||||||||||||||||| ||||||||||||||| ||||| | |||
seq2  TGACACTTGCAGCTAAATTTCCTTTTTTAAAAGCATTCAACTTCAATTTC  50

seq1  TACATAAG-ATTGGTGAAATTAC-AGATTAAGCCTATAGTATATTGTATA  95
      |||||||| |||||||||||||| ||||||||||||||||||||||||||
seq2  TACATAAGAATTGGTGAAATTACAAGATTAAGCCTATAGTATATTGTATA  100

seq1  TTACATGTTTAACC-AACTGAGTGTTCAGTATACCTGTAT-AAACAGTAG  143
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  TTACATGTTTAACCAAACTGAGTGTTCAGTATACCTGTATAAAACAGTAG  150

seq1  -CCATAATTGCAT-AAAATGCTACAGGCATGATCACCATCAGCAATGACA  191
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCATAATTGCATAAAAATGCTACAGGCATGATCACCATCAGCAATGACA  200

seq1  ATAAGCTATCACTGAAGAGCAAGTGGGTGTCACAGCAAGGACAAGAGCTG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCTATCACTGAAGAGCAAGTGGGTGTCACAGCAAGGACAAGAGCTG  250

seq1  GATGAATTAGTTATAGACACAGGCATTGTAGCTGTGCTCTATTTGATGAT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTAGTTATAGACACAGGCATTGTAGCTGTGCTCTATTTGATGAT  300

seq1  TGACACACTACTCAATTCCTTCACTGTTAGTTTACTGCTCCCCCCCCCCC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACACTACTCAATTCCTTCACTGTTAGTTTACTGCTCCCCCCCCCCC  350

seq1  CCGAGCTCTTTGAAATGATTGAATTAATATGATTGCACAGCCCCTGAATT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCTCTTTGAAATGATTGAATTAATATGATTGCACAGCCCCTGAATT  400

seq1  AACCTTTGATATGGAGTAAATAATATATTTCTCCTTACTACAACAATATT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTGATATGGAGTAAATAATATATTTCTCCTTACTACAACAATATT  450

seq1  CTTAATATAGTATGATTTTTTTTATTTTCTTGAGGTTTTTATAAACAACA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATATAGTATGATTTTTTTTATTTTCTTGAGGTTTTTATAAACAACA  500

seq1  ATGCATATTTTAGTTGAGAATTTAGTTTTAGAAATAAAGTAATGTTTTAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATATTTTAGTTGAGAATTTAGTTTTAGAAATAAAGTAATGTTTTAC  550

seq1  TTTTTTCACAATATGATTATTATAACAAATAATATTCATTGTCAAAACCT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCACAATATGATTATTATAACAAATAATATTCATTGTCAAAACCT  600

seq1  ACTTGCCTCTCCATAACCCATGGGTCTCTCTTTCTAAATGTTGGCATATA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCTCTCCATAACCCATGGGTCTCTCTTTCTAAATGTTGGCATATA  650

seq1  TGTTGGGCATTTGGCCCAGAAGATAGTAGATGTGTACTCAATATTTTAAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGGCATTTGGCCCAGAAGATAGTAGATGTGTACTCAATATTTTAAA  700

seq1  CATAAATCATCTGAGCCGTAGTCTCTGTCCTTATGATGTTTCCCTCTGAC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATCATCTGAGCCGTAGTCTCTGTCCTTATGATGTTTCCCTCTGAC  750

seq1  CTTGGGTTGTCAGGAACTGTTCCAAGCACCGAAGGATGGGAAGAATACTG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTGTCAGGAACTGTTCCAAGCACCGAAGGATGGGAAGAATACTG  800

seq1  AGTCTTCTGTCTATAAAGAAATTAATCCATCTGAATATGGAATTC  836
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTGTCTATAAAGAAATTAATCCATCTGAATATGGAATTC  845

seq1: chr9_11538180_11539187
seq2: B6Ng01-097G17.g_69_1090

seq1  GAATTCTAATGAGAGTGAGAAAGAAAGGGTTTGGATATGAATGGATGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATGAGAGTGAGAAAGAAAGGGTTTGGATATGAATGGATGAGC  50

seq1  AAATGTGGAAGATCTTGAAAGAACTGGGAAAAGAAAAATTAAAATCAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGAAGATCTTGAAAGAACTGGGAAAAGAAAAATTAAAATCAGGA  100

seq1  TATATTGTTTGAAAAAATTATCTTAATTAAAAATACATCATGATCACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTGTTTGAAAAAATTATCTTAATTAAAAATACATCATGATCACTGA  150

seq1  AAGAATTAAATTTAACAATTTAAATGTCATAAAATATTACTTTATTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTAAATTTAACAATTTAAATGTCATAAAATATTACTTTATTTCTT  200

seq1  ATTAGAATAAATACGTAGTACATTCATGGCATATGCAGCATGTGTATTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATAAATACGTAGTACATTCATGGCATATGCAGCATGTGTATTAA  250

seq1  ACTCTGCATTATTTGCATTGTGCTTGATTATTTAAAAGACTCATGACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCATTATTTGCATTGTGCTTGATTATTTAAAAGACTCATGACAAC  300

seq1  ACAGTTTATATTATGACTTCCATTCTTAATAGTGAATGTAAAAGAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTATATTATGACTTCCATTCTTAATAGTGAATGTAAAAGAAAATA  350

seq1  TGCAATAATATGCATTCCTGTGTCTGTTTTCTTTTGCCTCCATTTAGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATAATATGCATTCCTGTGTCTGTTTTCTTTTGCCTCCATTTAGGTG  400

seq1  CATAAAACATATTTTCAGAAGTCTTGAAGAGAAAGTGCAGCAGTATTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAACATATTTTCAGAAGTCTTGAAGAGAAAGTGCAGCAGTATTGCT  450

seq1  TCACAAACTCTGTAACTCCAGTTTGAGTAGATCCCACTCACTCTTGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACTCTGTAACTCCAGTTTGAGTAGATCCCACTCACTCTTGTGGC  500

seq1  CTCTGTAGCCATCTACACACACACACACACACACACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGCCATCTACACACACACACACACACACACACACACACACACAC  550

seq1  ACACACACACACAAATTAATGACAAAAAAAAATCAAAAACCAAAACTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACAAATTAATGACAAAAAAAAATCAAAAACCAAAACTTTG  600

seq1  TGTCGGGGAGGGCGCATTTCGAGACAACGTTTCTCTGTTTAGCCCTGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGGGAGGGCGCATTTCGAGACAACGTTTCTCTGTTTAGCCCTGGCT  650

seq1  GTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAAATCAGAAATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAAATCAGAAATATC  700

seq1  TTACAACAATTACTTTTATAAGGTTTTTCAAGCCATC-TTAATTAAACCC  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTACAACAATTACTTTTATAAGGTTTTTCAAGCCATCTTTAATTAAACCC  750

seq1  TAGCAGTGA-TTTTTTTCTAGGTTTTTTGCTTTCACTCAGTCATG-TTTT  797
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  TAGCAGTGATTTTTTTTCTAGGTTTTTTGCTTTCACTCAGTCATGTTTTT  800

seq1  GTTAATTTTACAATATCATACATGTTTTCC-TGTCTTTTGTATCCAAAAT  846
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTAATTTTACAATATCATACATGTTTTCCTTGTCTTTTGTATCCAAAAT  850

seq1  ATATGGTGCTTTCAGTAATAAGGTCTTATAG-TGTCCAAAAGGGATGACA  895
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATATGGTGCTTTCAGTAATAAGGTCTTATAGTTGTCCAAAAGGGATGACA  900

seq1  AGAGATTTTA-TTTTAGAGTAGTTGCAATTCCCCCTAACCAACAGTATTC  944
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  AGAGATTTTATTTTTAGAGTAGTTGCAATTCCCCCTAACCAACAGTATT-  949

seq1  CATATCT-GGTACTTAAAGGTTTTTGGTTTT----TGTTGTTGTTGTTGT  989
      ||||||| |||||||||||||||||||||||    ||||||  |||||| 
seq2  CATATCTGGGTACTTAAAGGTTTTTGGTTTTGGTGTGTTGTGTTTGTTGG  999

seq1  TTTGTTTTGT----TTTGTTTTG  1008
      ||||||||||    |||||||||
seq2  TTTGTTTTGTTTGGTTTGTTTTG  1022