BAC Information

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BAC

Clone NameB6Ng01-097K17
Chromosome9 (Build37)
Map Location 116,431,853 - 116,489,867
singlet/doubletdoublet
Overlap geneRbms3
Upstream geneGadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097K17.bB6Ng01-097K17.g
ACCDH907975DH907976
length1,1141,052
definitionDH907975|Mus musculus domesticus DNA, BAC clone: B6Ng01-097K17, 5' end.DH907976|Mus musculus domesticus DNA, BAC clone: B6Ng01-097K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,431,853 - 116,432,957)(116,488,828 - 116,489,867)
sequence
gaattcagttcctcaggctttctggccagctcctccatccaccaattttt
tcttgccagcccctacaggcttccttacaatgtagcttcatatgttcttc
tcaccttgcattggaaatttatctcctcctgaatttcaaaaagtttgtcg
taaccttaatcaagagagtaaattctgtgatttccaaggttaactcaaaa
tatgtgtttccctttcactggttagttttgtccacttcatacaagctgga
gacatctgcaaagagggaacctcagttgagaaaatccctccattcgattg
acctacagacatcagtctgtaaccaccccaggcaataagttgtgtgttgt
atagaaatcagggtgagcaagccagtgagcagcacccctctgtggtctca
gcttcaggtctgcctggagccttgccctaatttcccttagggaacatttc
tcattcactgggaaggtttgctcctggatccagttgccattctgagagga
acatcaacagccctcataaaggggaaaaaaatatcagcaggtcctttagt
ctgtagcctaactgaacacacaccccaaagacacacccatggtagctgag
agaactgaatttggctttctagaattctgttgtcaggtggagaaggtagt
tgtttctttattggtgaaatgctaagccctgtggcagagccagctgtcct
gcaggagcctgatgaccttggaaaaggaaggagtcacagaggtttatacc
tggaagggtctcatctttctgctgcctcctttctccccaacactccccca
ccccagtcttttgtcagtgtgtgtgtgttttttttacttgtttgcttgct
ttttgttttagcttgtttggtttgtttttttgagacaaagtctcacttgg
gcaccctcccccccccagctgtccctcagatctaatgctttaaagtccag
ccacatgggattgaccccctacttgattgacccccccctccttaaaaaaa
aaccaaacaaaccagaaaagaggattggtcaaccacgaaaggaagtatcc
ctctccccactagaagcaggccctccactctttggaatggaatgatggag
aatgttccctcccc
gaattccattccccactgagttaccacttattccttgtgctgttataaaa
cctttaaaatagctggaatccaggggcttgtgaggtggttccatgggtaa
gggaatgtgctctcaaagtgggagcacctagttcaaatccctggcaccca
cagaagtagcaagtgtggacaaatatgattgttactcagcactgggtgaa
ccgaatcagacatctcattacaaatcagccaaccagccaagcagaaagtg
accttcagggtcagtgtctcaaggcaatacagcagagaccaataggggaa
gacattcaactttgacctttggcctccacatgtgcacaaccaaatgcaca
cacacaagtgtgcagacacacaatatatacatacaaaattaaaagctagg
tgtttgtttttttacatttttaattaaaactcctttccctttcctttcct
ccctccattccttccatccttccccatctcaagtttatagcctctttctt
ctttaattattattggtcatccagtacaaacaacaaaaaatggactcaac
atgctataatatatatttatacatgtgtatataaaaataatgaaataaaa
ataaaaacttagatgtaaccagatcccatagagcatatctgcaagcccag
ttaaagtcccaattgccgaaccaggagtcttttgcctccagttccatgtt
tgtgacctctgtgttaccatttcaaacctttaaggaccctgttgcactca
tttgaagttatgtgatcaccagtatctatagagtaaaacttggggtctct
tgatgaaagagatttgccttcattccactacaatttagggttagaaagcc
cattcgtagaccctgatgaaatgggcactaggatcggggctttcagctga
aaggagcgctggagctgttcagtctgtctttctaccctcctcacagcaag
gtagatggactaagattcctctgattgtcaagtaacaaatatacaaagtt
atgctgcaggggtgcccagtggcccttcccttctgtctggtggcttgctt
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_116431853_116432957
seq2: B6Ng01-097K17.b_43_1156

seq1  GAATTCAGTTCCTCAGGCTTTCTGGCCAGCTCCTCCATCCACCAATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCTCAGGCTTTCTGGCCAGCTCCTCCATCCACCAATTTTT  50

seq1  TCTTGCCAGCCCCTACAGGCTTCCTTACAATGTAGCTTCATATGTTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCAGCCCCTACAGGCTTCCTTACAATGTAGCTTCATATGTTCTTC  100

seq1  TCACCTTGCATTGGAAATTTATCTCCTCCTGAATTTCAAAAAGTTTGTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTGCATTGGAAATTTATCTCCTCCTGAATTTCAAAAAGTTTGTCG  150

seq1  TAACCTTAATCAAGAGAGTAAATTCTGTGATTTCCAAGGTTAACTCAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTAATCAAGAGAGTAAATTCTGTGATTTCCAAGGTTAACTCAAAA  200

seq1  TATGTGTTTCCCTTTCACTGGTTAGTTTTGTCCACTTCATACAAGCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGTTTCCCTTTCACTGGTTAGTTTTGTCCACTTCATACAAGCTGGA  250

seq1  GACATCTGCAAAGAGGGAACCTCAGTTGAGAAAATCCCTCCATTCGATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTGCAAAGAGGGAACCTCAGTTGAGAAAATCCCTCCATTCGATTG  300

seq1  ACCTACAGACATCAGTCTGTAACCACCCCAGGCAATAAGTTGTGTGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACAGACATCAGTCTGTAACCACCCCAGGCAATAAGTTGTGTGTTGT  350

seq1  ATAGAAATCAGGGTGAGCAAGCCAGTGAGCAGCACCCCTCTGTGGTCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATCAGGGTGAGCAAGCCAGTGAGCAGCACCCCTCTGTGGTCTCA  400

seq1  GCTTCAGGTCTGCCTGGAGCCTTGCCCTAATTTCCCTTAGGGAACATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGGTCTGCCTGGAGCCTTGCCCTAATTTCCCTTAGGGAACATTTC  450

seq1  TCATTCACTGGGAAGGTTTGCTCCTGGATCCAGTTGCCATTCTGAGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCACTGGGAAGGTTTGCTCCTGGATCCAGTTGCCATTCTGAGAGGA  500

seq1  ACATCAACAGCCCTCATAAAGGGGAAAAAAATATCAGCAGGTCCTTTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACAGCCCTCATAAAGGGGAAAAAAATATCAGCAGGTCCTTTAGT  550

seq1  CTGTAGCCTAACTGAACACACACCCCAAAGACACACCCATGGTAGCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCCTAACTGAACACACACCCCAAAGACACACCCATGGTAGCTGAG  600

seq1  AGAACTGAATTTGGCTTTCTAGAATTCTGTTGTCAGGTGGAGAAGGTAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAATTTGGCTTTCTAGAATTCTGTTGTCAGGTGGAGAAGGTAGT  650

seq1  TGTTTCTTTATTGGTGAAATGCTAAGCCCTGTGGCAGAGCCAGCTGTCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTATTGGTGAAATGCTAAGCCCTGTGGCAGAGCCAGCTGTCCT  700

seq1  GCAGGAGCCTGATGACCTTGGAAAAGGAAGGAGTCACAGAGGTTTATACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCCTGATGACCTTGGAAAAGGAAGGAGTCACAGAGGTTTATACC  750

seq1  TGGAAGGGTCTCATCTTTCTGCTGCCTCC-TTCTCCCCAACACTCCCCCA  799
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGGAAGGGTCTCATCTTTCTGCTGCCTCCTTTCTCCCCAACACTCCCCCA  800

seq1  CCCCAGTCTTTTGTCAGTGTGTGTGTG-TTTTTTTACTTGTTTGCTTGCT  848
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CCCCAGTCTTTTGTCAGTGTGTGTGTGTTTTTTTTACTTGTTTGCTTGCT  850

seq1  TTTTGTTTTTAGCTTGTTT-GTTTG-TTTTTTGAGACAAAGTCTCAC-TC  895
      ||||| ||||||||||||| ||||| ||||||||||||||||||||| | 
seq2  TTTTG-TTTTAGCTTGTTTGGTTTGTTTTTTTGAGACAAAGTCTCACTTG  899

seq1  GGCACC--CCCCCCCCCAGCTGT-CCTCAGATCTAATGC-TTAAAGTCCA  941
      ||||||  ||||||||||||||| ||||||||||||||| ||||||||||
seq2  GGCACCCTCCCCCCCCCAGCTGTCCCTCAGATCTAATGCTTTAAAGTCCA  949

seq1  GCCACATGGGGATTGACCCCCTACTTGATTGA-CCCCCCCTCCTTAAAAA  990
      ||||||| |||||||||||||||||||||||| ||||||||||||  |||
seq2  GCCACAT-GGGATTGACCCCCTACTTGATTGACCCCCCCCTCCTT--AAA  996

seq1  AAAAAACCAAACAAACCAGAGAAGAGGATTG--CAAACACAGAAAGGAAG  1038
      |||||||||||||||||||| ||||||||||  ||| ||| |||||||||
seq2  AAAAAACCAAACAAACCAGAAAAGAGGATTGGTCAACCAC-GAAAGGAAG  1045

seq1  TATCCATCCTCACACTAGAAGCAGG-CCTCCATCTTTTGGGATGG-ATGA  1086
      ||||| ||  | ||||||||||||| ||||||   ||||| |||| ||||
seq2  TATCCCTCTCCCCACTAGAAGCAGGCCCTCCACTCTTTGGAATGGAATGA  1095

seq1  TGGAAGATGTTCCCTCCCC  1105
      ||||  |||||||||||||
seq2  TGGAGAATGTTCCCTCCCC  1114

seq1: chr9_116488828_116489867
seq2: B6Ng01-097K17.g_69_1120 (reverse)

seq1  TAAAGCAAGCCA-CAG-CAGAAGGGAAGGGCCACTGGGCACCCCTGCAGC  48
      |||||||||||| ||| |||||||||||||||||||||||||||||||||
seq2  TAAAGCAAGCCACCAGACAGAAGGGAAGGGCCACTGGGCACCCCTGCAGC  50

seq1  AT-ACTTTGTATTATTTGTTACTTGACAATCAGAGGATTCTTAGTCCATC  97
      || |||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  ATAACTTTGTA-TATTTGTTACTTGACAATCAGAGGAATCTTAGTCCATC  99

seq1  TACCTTGCTGTGAGGAGGGTAGACAGACAGACTGCACAGCT-CAGCGCTC  146
      ||||||||||||||||||||||| |||||||||| |||||| ||||||||
seq2  TACCTTGCTGTGAGGAGGGTAGAAAGACAGACTGAACAGCTCCAGCGCTC  149

seq1  CTTTCAGCTGAAAGCCCCGATCCTAGTG-CCATTTCATCAGGGTCTACG-  194
      |||||||||||||||||||||||||||| |||||||||||||||||||| 
seq2  CTTTCAGCTGAAAGCCCCGATCCTAGTGCCCATTTCATCAGGGTCTACGA  199

seq1  ATGGGCTTTCTAACCCT-AATTGTAGTGG-ATGAAGGCAAATCTCTTTCA  242
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  ATGGGCTTTCTAACCCTAAATTGTAGTGGAATGAAGGCAAATCTCTTTCA  249

seq1  TC-AGAGA-CCCAAGTTTTACTCTATAGATACTGGTGATCACATAACTTC  290
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGACCCCAAGTTTTACTCTATAGATACTGGTGATCACATAACTTC  299

seq1  AAATGAGTGCAACAGGGTCCTT-AAGGTTTG-AATGGTAACACAGAGGTC  338
      |||||||||||||||||||||| |||||||| ||||||||||||||||||
seq2  AAATGAGTGCAACAGGGTCCTTAAAGGTTTGAAATGGTAACACAGAGGTC  349

seq1  ACAAACATGGAACTGGAGGC-AAAGACTCCTGGTTCGGCAATTGGGACTT  387
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACAAACATGGAACTGGAGGCAAAAGACTCCTGGTTCGGCAATTGGGACTT  399

seq1  TAACTGGGCTTGCAGATATGCTCTATGGGATCTGGTTACATCTAAGTTTT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGGCTTGCAGATATGCTCTATGGGATCTGGTTACATCTAAGTTTT  449

seq1  TATTTTTATTTCATTATTTTTATATACACATGTATAAATATATATTATAG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTATTTCATTATTTTTATATACACATGTATAAATATATATTATAG  499

seq1  CATGTTGAGTCCATTTTTTGTTGTTTGTACTGGATGACCAATAATAATTA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTGAGTCCATTTTTTGTTGTTTGTACTGGATGACCAATAATAATTA  549

seq1  AAGAAGAAAGAGGCTATAAACTTGAGATGGGGAAGGATGGAAGGAATGGA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAGAGGCTATAAACTTGAGATGGGGAAGGATGGAAGGAATGGA  599

seq1  GGGAGGAAAGGAAAGGGAAAGGAGTTTTAATTAAAAATGTAAAAAAACAA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAAAGGAAAGGGAAAGGAGTTTTAATTAAAAATGTAAAAAAACAA  649

seq1  ACACCTAGCTTTTAATTTTGTATGTATATATTGTGTGTCTGCACACTTGT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTAGCTTTTAATTTTGTATGTATATATTGTGTGTCTGCACACTTGT  699

seq1  GTGTGTGCATTTGGTTGTGCACATGTGGAGGCCAAAGGTCAAAGTTGAAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCATTTGGTTGTGCACATGTGGAGGCCAAAGGTCAAAGTTGAAT  749

seq1  GTCTTCCCCTATTGGTCTCTGCTGTATTGCCTTGAGACACTGACCCTGAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCCCCTATTGGTCTCTGCTGTATTGCCTTGAGACACTGACCCTGAA  799

seq1  GGTCACTTTCTGCTTGGCTGGTTGGCTGATTTGTAATGAGATGTCTGATT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACTTTCTGCTTGGCTGGTTGGCTGATTTGTAATGAGATGTCTGATT  849

seq1  CGGTTCACCCAGTGCTGAGTAACAATCATATTTGTCCACACTTGCTACTT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTCACCCAGTGCTGAGTAACAATCATATTTGTCCACACTTGCTACTT  899

seq1  CTGTGGGTGCCAGGGATTTGAACTAGGTGCTCCCACTTTGAGAGCACATT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTGCCAGGGATTTGAACTAGGTGCTCCCACTTTGAGAGCACATT  949

seq1  CCCTTACCCATGGAACCACCTCACAAGCCCCTGGATTCCAGCTATTTTAA  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACCCATGGAACCACCTCACAAGCCCCTGGATTCCAGCTATTTTAA  999

seq1  AGGTTTTATAACAGCACAAGGAATAAGTGGTAACTCAGTGGGGAATGGAA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTATAACAGCACAAGGAATAAGTGGTAACTCAGTGGGGAATGGAA  1049

seq1  TTC  1040
      |||
seq2  TTC  1052