BAC Information

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BAC

Clone NameB6Ng01-098A15
Chromosome9 (Build37)
Map Location 92,916,876 - 93,043,922
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114
Downstream geneLOC674371, LOC384967
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098A15.bB6Ng01-098A15.g
ACCDH908247DH908248
length1,1661,051
definitionDH908247|Mus musculus domesticus DNA, BAC clone: B6Ng01-098A15, 5' end.DH908248|Mus musculus domesticus DNA, BAC clone: B6Ng01-098A15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,042,740 - 93,043,922)(92,916,876 - 92,917,924)
sequence
gaattcccttaggagaaagctgtgcagcacaacttgaagcgaatacaagg
catacaattaatttagacaatttaagtgttgatttattctactcaggctt
attatatagatgatgctaacatgaatatttaatatatacttttaatatct
cacatgttttctgtcacttacaaaaaaattgctactttatttgaaaactc
attatacttacattctaatattttattttaagctccaaaaattaataaca
ttcgaattgcttttaaagatgcctgtatgtcctctgattttataagagga
aagttctttgtactgactctgccacagccagagcttgttgaagttaaaaa
ccttccatctttaaatttgttatattccatatcaggtgatagtatctgaa
atggagactcataccatacacaggatgttgagtggctgaaatttgctggg
cagattgctgcacaactttggtgccattcagatcccatgtttattttgga
aaaaataatgttctatctcatttattttgctcttcccatccccacttctg
ctgattctttacatctgaagtttacatttgttgtaagaatttcaaaagaa
taattataatggcccacatttatctcattacaatatacatttaaccaatt
ctcatactattttttgaatatgatgtctatacttcattttagattagtat
aattctttataatgagttttaaaagtcagaacccacattttgtttttaat
atgtagaatatatacaataacaaaacatgagaaatcatgtatacagatat
gtacatgcacagaagtgaaatacacaccacatgttctgtagttcatcaga
aaacctagaaacataaggctggttaagaaaggatgtaaatattgagaaaa
aagtcaaacgtaattgtcacttttagtgacttgaggggacaaactgcttt
tgatatctttttttttttttttcagaataaaagtaaataatgtatttctc
agctacgcatcctacatttccacctgtttgataaggttactggctatctc
agtgtcaagactgaaataagaaataacagaaatttctttatgatttcatc
tactccttaactcatgatcagtttaactatgatagactatcaggattaat
tcatcaaagaggagat
gaattcaaagtgtttgtgatagcatgcacaaatcctgtgcaagtttaaaa
tcaggcagtatcccatcatatataggagagttagacagaaaggtccatca
atctaagaaactactagcgattaatagctgttgggagatggagagtaaat
tttttttaagagtgtgactcctggtaggtccaccatgatccagtagatgg
cccacacccaagaatatttggacaacataattcgaacttgatgagcttgg
cgcatgcctttaatcccagcacttgggaggcagagacaggtggacttctg
agtttgaggccagcctggtctacagagttagttccaggacagccaaggct
acacagagaaaccctgtttcaaaaacaaacaaaacaacaacaacaaagta
atgaaataggttagaaaattgaatagtcaacaaagggggattgtgtctgg
aaagtattgaggaaggaggtaaatatgacaaaaagagaccagtagaattc
ttctaatctaaacgagaaccataatagacaaagaaaatgagaagagtatc
aaggacttgtagaatgacaggaaatttaagccttttttttttttctctat
atcccatgctgctaaatcattgagttaaattgtcagaagatagcagcctt
tgtgtacagaatagcaaggaagagttaaatcattaaagtttgcagctttt
ggtcccattctgtaccccctttcactacctcccttggggaactggattca
gaagtagcgctcagaagaaagagtagtgaggagaatattcaaagaagcag
tgtccaagactcctaagtttggtgaaaactgttgctgaacaagagattca
tgaggttgatggaataaaagaaagcataaattcaacctgcaaatgcatgc
acccaaactttggaaattgacttgaaagcattcagaaagaaatggtgtag
aacatgactatgagttatagtttcacacagattctcaggagccaagagca
gagaagcattgttgggtctcaaatatcacaagatagtagaaatgatatgt
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_93042740_93043922
seq2: B6Ng01-098A15.b_48_1213 (reverse)

seq1  ATCTCCTCTAATGATGAAATTAATACTGATTAGTCTATCATTAGTAAAAC  50
      |||||||||  ||||| ||||||| |||| |||||||||| |||| ||||
seq2  ATCTCCTCT-TTGATG-AATTAATCCTGA-TAGTCTATCA-TAGTTAAAC  46

seq1  TGAATCATGAGTTTAAGGAAGTAGATGAAATCATAAAGAAATTTTCTGTT  100
      || |||||||| |||||| |||||||||||||||||||||| ||||||||
seq2  TG-ATCATGAG-TTAAGG-AGTAGATGAAATCATAAAGAAA-TTTCTGTT  92

seq1  ATGTCTTATGTCAGTTCTTGAACACTGAGGATAAGCCAGTAACCTATTCA  150
      || |||||| |||| ||||| ||||||| ||| ||||||||||||  |||
seq2  ATTTCTTATTTCAG-TCTTG-ACACTGA-GAT-AGCCAGTAACCTTATCA  138

seq1  AACAGGTTGGAAATGGTAGGATGCCTTAGCTGAGAAATACATTATTTACT  200
      |||||| ||||||| |||||||| | ||||||||||||||||||||||||
seq2  AACAGG-TGGAAAT-GTAGGATG-CGTAGCTGAGAAATACATTATTTACT  185

seq1  TTTATTTCTGAAAAAAAAAAAAAAAGATATCAAAAGCAGTTTGTCCCCTC  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTA-TTCTGAAAAAAAAAAAAAAAGATATCAAAAGCAGTTTGTCCCCTC  234

seq1  AAGTCACTAAAAGTGACAATTACGTTTGACTTTTTTTCTCAATATTTACA  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAGTCACTAAAAGTGACAATTACGTTTGAC-TTTTTTCTCAATATTTACA  283

seq1  TCCTTTCTTAACCAGCCTTATGTTTCTAGGTTTTCTGATGAACTACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTTAACCAGCCTTATGTTTCTAGGTTTTCTGATGAACTACAGAA  333

seq1  CATGTGGTGTGTATTTCACTTCTGTGCATGTACATATCTGTATACATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGTGTGTATTTCACTTCTGTGCATGTACATATCTGTATACATGAT  383

seq1  TTCTCATGTTTTGTTATTGTATATATTCTACATATTAAAAACAAAATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATGTTTTGTTATTGTATATATTCTACATATTAAAAACAAAATGTG  433

seq1  GGTTCTGACTTTTAAAACTCATTATAAAGAATTATACTAATCTAAAATGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTGACTTTTAAAACTCATTATAAAGAATTATACTAATCTAAAATGA  483

seq1  AGTATAGACATCATATTCAAAAAATAGTATGAGAATTGGTTAAATGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGACATCATATTCAAAAAATAGTATGAGAATTGGTTAAATGTATA  533

seq1  TTGTAATGAGATAAATGTGGGCCATTATAATTATTCTTTTGAAATTCTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAATGAGATAAATGTGGGCCATTATAATTATTCTTTTGAAATTCTTA  583

seq1  CAACAAATGTAAACTTCAGATGTAAAGAATCAGCAGAAGTGGGGATGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAATGTAAACTTCAGATGTAAAGAATCAGCAGAAGTGGGGATGGGA  633

seq1  AGAGCAAAATAAATGAGATAGAACATTATTTTTTCCAAAATAAACATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAATAAATGAGATAGAACATTATTTTTTCCAAAATAAACATGGG  683

seq1  ATCTGAATGGCACCAAAGTTGTGCAGCAATCTGCCCAGCAAATTTCAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATGGCACCAAAGTTGTGCAGCAATCTGCCCAGCAAATTTCAGCC  733

seq1  ACTCAACATCCTGTGTATGGTATGAGTCTCCATTTCAGATACTATCACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACATCCTGTGTATGGTATGAGTCTCCATTTCAGATACTATCACCT  783

seq1  GATATGGAATATAACAAATTTAAAGATGGAAGGTTTTTAACTTCAACAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGAATATAACAAATTTAAAGATGGAAGGTTTTTAACTTCAACAAG  833

seq1  CTCTGGCTGTGGCAGAGTCAGTACAAAGAACTTTCCTCTTATAAAATCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTGTGGCAGAGTCAGTACAAAGAACTTTCCTCTTATAAAATCAG  883

seq1  AGGACATACAGGCATCTTTAAAAGCAATTCGAATGTTATTAATTTTTGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATACAGGCATCTTTAAAAGCAATTCGAATGTTATTAATTTTTGGA  933

seq1  GCTTAAAATAAAATATTAGAATGTAAGTATAATGAGTTTTCAAATAAAGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAATAAAATATTAGAATGTAAGTATAATGAGTTTTCAAATAAAGT  983

seq1  AGCAATTTTTTTGTAAGTGACAGAAAACATGTGAGATATTAAAAGTATAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATTTTTTTGTAAGTGACAGAAAACATGTGAGATATTAAAAGTATAT  1033

seq1  ATTAAATATTCATGTTAGCATCATCTATATAATAAGCCTGAGTAGAATAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATATTCATGTTAGCATCATCTATATAATAAGCCTGAGTAGAATAA  1083

seq1  ATCAACACTTAAATTGTCTAAATTAATTGTATGCCTTGTATTCGCTTCAA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACACTTAAATTGTCTAAATTAATTGTATGCCTTGTATTCGCTTCAA  1133

seq1  GTTGTGCTGCACAGCTTTCTCCTAAGGGAATTC  1183
      |||||||||||||||||||||||||||||||||
seq2  GTTGTGCTGCACAGCTTTCTCCTAAGGGAATTC  1166

seq1: chr9_92916876_92917924
seq2: B6Ng01-098A15.g_67_1117

seq1  GAATTCAAAGTGTTTGTGATAGCATGCACAAATCCTGTGCAAGTTTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTGTTTGTGATAGCATGCACAAATCCTGTGCAAGTTTAAAA  50

seq1  TCAGGCAGTATCCCATCATATATAGGAGAGTTAGACAGAAAGGTCCATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAGTATCCCATCATATATAGGAGAGTTAGACAGAAAGGTCCATCA  100

seq1  ATCTAAGAAACTACTAGCGATTAATAGCTGTTGGGAGATGGAGAGTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGAAACTACTAGCGATTAATAGCTGTTGGGAGATGGAGAGTAAAT  150

seq1  TTTTTTTAAGAGTGTGACTCCTGGTAGGTCCACCATGATCCAGTAGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAAGAGTGTGACTCCTGGTAGGTCCACCATGATCCAGTAGATGG  200

seq1  CCCACACCCAAGAATATTTGGACAACATAATTCGAACTTGATGAGCTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCCAAGAATATTTGGACAACATAATTCGAACTTGATGAGCTTGG  250

seq1  CGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGTGGACTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATGCCTTTAATCCCAGCACTTGGGAGGCAGAGACAGGTGGACTTCTG  300

seq1  AGTTTGAGGCCAGCCTGGTCTACAGAGTTAGTTCCAGGACAGCCAAGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGAGGCCAGCCTGGTCTACAGAGTTAGTTCCAGGACAGCCAAGGCT  350

seq1  ACACAGAGAAACCCTGTTTCAAAAACAAACAAAACAACAACAACAAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGAAACCCTGTTTCAAAAACAAACAAAACAACAACAACAAAGTA  400

seq1  ATGAAATAGGTTAGAAAATTGAATAGTCAACAAAGGGGGATTGTGTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATAGGTTAGAAAATTGAATAGTCAACAAAGGGGGATTGTGTCTGG  450

seq1  AAAGTATTGAGGAAGGAGGTAAATATGACAAAAAGAGACCAGTAGAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATTGAGGAAGGAGGTAAATATGACAAAAAGAGACCAGTAGAATTC  500

seq1  TTCTAATCTAAACGAGAACCATAATAGACAAAGAAAATGAGAAGAGTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATCTAAACGAGAACCATAATAGACAAAGAAAATGAGAAGAGTATC  550

seq1  AAGGACTTGTAGAATGACAGGAAATTTAAGCCTTTTTTTTTTTTCTCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTTGTAGAATGACAGGAAATTTAAGCCTTTTTTTTTTTTCTCTAT  600

seq1  ATCCCATGCTGCTAAATCATTGAGTTAAATTGTCAGAAGATAGCAGCCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATGCTGCTAAATCATTGAGTTAAATTGTCAGAAGATAGCAGCCTT  650

seq1  TGTGTACAGAATAGCAAGGAAGAGTTAAATCATTAAAGTTTGCAGCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACAGAATAGCAAGGAAGAGTTAAATCATTAAAGTTTGCAGCTTTT  700

seq1  GGTCCCATTCTGTACCCCCTTTCACTACCTCCCTTGGGGAACTGGATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCATTCTGTACCCCCTTTCACTACCTCCCTTGGGGAACTGGATTCA  750

seq1  GAAGTAGCGCTCAGAAGAAAGAGTAGTGAGGAGAATATTCAAAGAAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGCGCTCAGAAGAAAGAGTAGTGAGGAGAATATTCAAAGAAGCAG  800

seq1  TGTCCAAGACTCCTAAGTTTGGTGAAAACTGTTGCTGAACAAGAGATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAGACTCCTAAGTTTGGTGAAAACTGTTGCTGAACAAGAGATTCA  850

seq1  TGAGGTTGATGGAATAAAAGAAAGCATAAATTCAACCTGCAAATGCATGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTGATGGAATAAAAGAAAGCATAAATTCAACCTGCAAATGCATGC  900

seq1  ACCCAAACTTTGGAAATTGACTTGAAAGCATTCAGAAAGAAATGGTGTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAACTTTGGAAATTGACTTGAAAGCATTCAGAAAGAAATGGTGTAG  950

seq1  AACATGACTATGAGTTATAGTTTCACACAAGATTCCCAGGAGCCAAGAGC  1000
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  AACATGACTATGAGTTATAGTTTCACAC-AGATTCTCAGGAGCCAAGAGC  999

seq1  AGAGAAGCATTGTTGGGTCTCCAAATATCACAAGATAGTAG----TATAT  1046
      |||||||||||||||||||| ||||||||||||||||||||     ||||
seq2  AGAGAAGCATTGTTGGGTCT-CAAATATCACAAGATAGTAGAAATGATAT  1048

seq1  GTA  1049
      |||
seq2  GTA  1051