BAC Information

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BAC

Clone NameB6Ng01-098F08
Chromosome9 (Build37)
Map Location 41,393,812 - 41,546,395
singlet/doubletdoublet
Overlap geneLOC100042464, EG667566
Upstream gene9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam, 2810457I06Rik, LOC628495
Downstream gene6720432D03Rik, Sorl1, Sc5d, Tecta, Tbcel, Grik4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098F08.bB6Ng01-098F08.g
ACCDH908456DH908457
length987642
definitionDH908456|Mus musculus domesticus DNA, BAC clone: B6Ng01-098F08, 5' end.DH908457|Mus musculus domesticus DNA, BAC clone: B6Ng01-098F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,393,812 - 41,394,817)(41,545,913 - 41,546,395)
sequence
gaattccatattttcagggagcatggagtttcttctctttattgctaagc
tctcccgactgataacatcatcctcagatggtattatggccaaaatattt
tgcctgaatattagtctcctgaacctgataccccatgccaatatgaacct
gacacacacacacacacaccaagatgaatggggcggagatgctgacgccc
gtatgggtgtgtttctataaggagggagtctgcaggctgtggggaggtga
ctgcctgctgtctgcatcacggaggtggctgggagatctttctccattgc
cttttcaagtcttccaggaaaaagatcaactgcaatttggtttcacttgt
cttgttccctaccccaagcaataaatgctaattagggatgctcaaagatc
ccaccattcggaataagtgtcatacttgacttcttccttgttcaagacat
tcctgggtgattttaaaaaaaaaaatcaagtcattctgtcccccattaag
gttcagtgagcattcactgaagagatgttcaaggtccactcatagcctca
tagctgcatttgaagtcaccccacgtgtgccttggcttattccaggtgga
gccactacttaatttcagagacggagatcatgtaaatgcatccaattctg
cacatgcaccacgaatgtatgatttttattttacaaaccctaaaagctcc
tccttccgggcccacctctttttttctgaaacgctcatgagcagaacaaa
ggaatgtactaactggggaggcagcattacatgtgagcagtcactgcact
gcgagtgtgcgctacgactacgtattcatcgaacagatgtgctgagaatt
aataaatgcacagcaactctgactcattagcagaaagactttaggaggat
cagagatggatccatcacttggagagactcttccttccttgagaccccaa
taatttagtggttggtgatgattcatgcgggctcgag
gaattctcctgcaaatgggaagtagaggaatgtgagcatactgtgctatc
tcttgctttatgaggtggggtggactgatagaagtggtctggacagatat
atcctgttggtatagaagtcctatggaaatcaaccaaaagggaatgggcc
agcgaacgccattaccaggacgtatttggtgaccaaattctctgtttttg
agtgatggaatctatgtctcttgtttagacttgttgaatttcactgatgg
tcaatatgggagagagacggaattgctttctagtttttagaaaaaggcag
acagacatgaacgagcaactttgacacaatggtggcaagtacgtgtttcc
aattactcaccctcagccccacctttggcctaaaaagaggccctttcact
gagtcagaacaaacgtcattcccctgacccatcactccaaggccttttgg
ttgactacccctggaggtgggccgtgagggtggagtgaatactttatatt
atttgtgggtgcatgcctgagtgtatgtatgtgtactacatgggtacggg
tgtccacagaggtgaggagtgggtatcacagccattggaaatggggtgta
ggcattgagagccaccagatgtaggtgcctgagaaccaaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_41393812_41394817
seq2: B6Ng01-098F08.b_44_1030

seq1  GAATTCCATATTTTCATGGAGCATGGAGTTTCAGCTCTTTATTGCTAAGC  50
      |||||||||||||||| |||||||||||||||  ||||||||||||||||
seq2  GAATTCCATATTTTCAGGGAGCATGGAGTTTCTTCTCTTTATTGCTAAGC  50

seq1  TCTCCCGACTGATAACATCATCCTCAGATGGTATTATGGCCAAAATATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCGACTGATAACATCATCCTCAGATGGTATTATGGCCAAAATATTT  100

seq1  TGCCTGAATATTAGTCTCCTGAACCTGATAGCCCATGCAAATATGAACCT  150
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  TGCCTGAATATTAGTCTCCTGAACCTGATACCCCATGCCAATATGAACCT  150

seq1  AACACACACACACACACACAAAGATGAATGGGCCGGAAATGCTGAGGCCC  200
       |||||||||||||||||| |||||||||||| |||| ||||||| ||||
seq2  GACACACACACACACACACCAAGATGAATGGGGCGGAGATGCTGACGCCC  200

seq1  GTATGGGTGTGTTTCTATAAGGAGGGAGTCTGCAGGCTGTGGGGAGGTAG  250
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTATGGGTGTGTTTCTATAAGGAGGGAGTCTGCAGGCTGTGGGGAGGT-G  249

seq1  ACTGCCTGCAGTCTGCATCACGGAGGTGGCTGCAGAGATCTTTCTCCATT  300
      ||||||||| ||||||||||||||||||||||  ||||||||||||||||
seq2  ACTGCCTGCTGTCTGCATCACGGAGGTGGCTG-GGAGATCTTTCTCCATT  298

seq1  GCCTTTTCAAGTCTTCAAGGTAAAAGAGCAACTGCAGTTTGGTTTCACTT  350
      |||||||||||||||| ||| |||||| |||||||| |||||||||||||
seq2  GCCTTTTCAAGTCTTCCAGGAAAAAGATCAACTGCAATTTGGTTTCACTT  348

seq1  GTATTGTTCCATAATCCAGGCAATAAATGCTAATTAGTAATGCTCAAGGA  400
      || ||||||| ||  ||| ||||||||||||||||||  |||||||| ||
seq2  GTCTTGTTCCCTACCCCAAGCAATAAATGCTAATTAGGGATGCTCAAAGA  398

seq1  TCCGACCATTCAGAGTAATTATCATAATTTACTTCTTCCTTGTTAAAGAC  450
      ||| ||||||| || ||| | ||||| || |||||||||||||| |||||
seq2  TCCCACCATTCGGAATAAGTGTCATACTTGACTTCTTCCTTGTTCAAGAC  448

seq1  ATTCCTTGCTGATTTTAAAAAAAAAAATCAAGTCATTCTGTCCCCCATTA  500
      |||||| | |||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGGTGATTTTAAAAAAAAAAATCAAGTCATTCTGTCCCCCATTA  498

seq1  CATTACAGTGAGTATTCACTAGAGAGATGTTCAAGGTCCACTCAGAGCCT  550
         | ||||||| |||||||  |||||||||||||||||||||| |||||
seq2  AGGTTCAGTGAGCATTCACTGAAGAGATGTTCAAGGTCCACTCATAGCCT  548

seq1  CATGGCTGCATTTGAAGTCACCCGACATGTGCCTTGGCTTATTCCAAGTG  600
      ||| ||||||||||||||||||| || ||||||||||||||||||| |||
seq2  CATAGCTGCATTTGAAGTCACCCCACGTGTGCCTTGGCTTATTCCAGGTG  598

seq1  GAGCCACAACTTAATTTCAAAAGCAGAATTCATGTAAATGCATCGAATTC  650
      ||||||| ||||||||||| |  | ||  ||||||||||||||| |||||
seq2  GAGCCACTACTTAATTTCAGAGACGGAGATCATGTAAATGCATCCAATTC  648

seq1  TGCACATGCACCAGGAATGTATGATTTTTATTTTACAAACCCCAAAGGCT  700
      ||||||||||||| |||||||||||||||||||||||||||| ||| |||
seq2  TGCACATGCACCACGAATGTATGATTTTTATTTTACAAACCCTAAAAGCT  698

seq1  CCTCCTTCCGGGCCCACC-CCTTTTTTCTGAAACCACTTATGAGCAGAAC  749
      |||||||||||||||||| | |||||||||||| | || |||||||||||
seq2  CCTCCTTCCGGGCCCACCTCTTTTTTTCTGAAA-CGCTCATGAGCAGAAC  747

seq1  AAAGGAATGTACTAACTGTGGAGGCAGCATTACATGTGAGCAGTCACTGC  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AAAGGAATGTACTAACTGGGGAGGCAGCATTACATGTGAGCAGTCACTGC  797

seq1  ACTGTGAAGTGTGCGCTACGACAACATATTTCATCGTACAGAAGTGCGGA  849
      |||| | ||||||||||||||| || || ||||||| ||||| |||| ||
seq2  ACTGCG-AGTGTGCGCTACGACTACGTA-TTCATCGAACAGATGTGCTGA  845

seq1  TAATTAAATAATGCCACAGCAACCCTGACTCATTAGCAGAAAGATCTTTA  899
       ||||||  |||| ||||||||| |||||||||||||||||||| |||| 
seq2  GAATTAATAAATG-CACAGCAACTCTGACTCATTAGCAGAAAGA-CTTT-  892

seq1  AGGAGGAATCAAGAAGATGGATCCAATCAACTTGGAGAGTACTCTTCCTT  949
      |||||| ||||   |||||||||| ||| |||||||||| ||||||||||
seq2  AGGAGG-ATCA--GAGATGGATCC-ATC-ACTTGGAGAG-ACTCTTCCTT  936

seq1  CTCTGAGATCTCAAATATATTTTAGTTGGTTGGTGATTGATTCATGCAGG  999
      |  ||||| | ||   ||| ||||| |||||||||| |||||||||| ||
seq2  CCTTGAGACCCCA---ATAATTTAG-TGGTTGGTGA-TGATTCATGC-GG  980

seq1  GCTCGAG  1006
      |||||||
seq2  GCTCGAG  987

seq1: chr9_41545913_41546395
seq2: B6Ng01-098F08.g_67_549 (reverse)

seq1  CCACCCTCACCGCCCACCTCCCGCCCTAGTCAACCAAAAGGCCTTGGAGT  50
      |||||||||| |||||||||| |   ||||||||||||||||||||||||
seq2  CCACCCTCACGGCCCACCTCCAGGGGTAGTCAACCAAAAGGCCTTGGAGT  50

seq1  GATGGGTCAGGGGACTGACCTTTGTTCTGACTCAGTGAAAGGGCCTCTTA  100
      |||||||||||||| |||| ||||||||||||||||||||||||||||| 
seq2  GATGGGTCAGGGGAATGACGTTTGTTCTGACTCAGTGAAAGGGCCTCTTT  100

seq1  CTAGGCCAAAGGTGGGGGTGAGGGTGAGTAATTGGAAACACGTACTTGCC  150
       |||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTAGGCCAAAGGTGGGGCTGAGGGTGAGTAATTGGAAACACGTACTTGCC  150

seq1  ACCATTGTGTCAAAGTTGCTCGTTCATGTCTGTCTGCCTTTTTCTAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGTGTCAAAGTTGCTCGTTCATGTCTGTCTGCCTTTTTCTAAAAA  200

seq1  CTAGAAAGCAATTCCGTCTCTCTCCCATATTGACCATCACTAAAATTCAA  250
      ||||||||||||||||||||||||||||||||||||||| | ||||||||
seq2  CTAGAAAGCAATTCCGTCTCTCTCCCATATTGACCATCAGTGAAATTCAA  250

seq1  CAACTCTAAACAAGAGACATAGATTCCATCACTCAAAAACAGAGAATTTG  300
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTAAACAAGAGACATAGATTCCATCACTCAAAAACAGAGAATTTG  300

seq1  GTCACCAAATACCTCCTGGTACTGGCCTTCGCTGGCCCATTCCCTTTTGG  350
      |||||||||||| |||||||| |||| |||||||||||||||||||||||
seq2  GTCACCAAATACGTCCTGGTAATGGCGTTCGCTGGCCCATTCCCTTTTGG  350

seq1  TTGATTTCCATAGGACTTCTATACCAACAGGATATATCTGTCCAGACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTCCATAGGACTTCTATACCAACAGGATATATCTGTCCAGACCAC  400

seq1  TTCTATCCCAGGTCACTC--ATTCATAAGCCAAGAGATAGCACAGTATGC  448
      ||||||  |||  ||| |    ||||||  ||||||||||||||||||||
seq2  TTCTAT--CAGTCCACCCCACCTCATAAAGCAAGAGATAGCACAGTATGC  448

seq1  CTCGATTCCTCTACTTCCCATTTGCAGGAGAATTC  483
          |||||||||||||||||||||||||||||||
seq2  TCACATTCCTCTACTTCCCATTTGCAGGAGAATTC  483