BAC Information

Click to search

BAC

Clone NameB6Ng01-098L07
Chromosome9 (Build37)
Map Location 58,247,282 - 58,403,380
singlet/doubletdoublet
Overlap gene6030419C18Rik, Cd276
Upstream genePpcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21
Downstream geneNptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098L07.bB6Ng01-098L07.g
ACCDH908720DH908721
length898246
definitionDH908720|Mus musculus domesticus DNA, BAC clone: B6Ng01-098L07, 5' end.DH908721|Mus musculus domesticus DNA, BAC clone: B6Ng01-098L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,402,480 - 58,403,380)(58,247,282 - 58,247,527)
sequence
gaattcttcgctgtcgagttaaccctttccgagccgcggtgctggcctgg
tgtcgaggggagaaattctggactgaatggggacagctggattgcagcgg
ggcttggagccagcagttccgagggtgggagtggtcagtggccggtcacc
tgtcccctctcaccgaaaaagaaacttcggctcttggaagtgctaggatc
cgtgtgggggatgggcagcgagtagcccaacacctcctcctcctcctcag
agtactgggtcttcccccgtcggggtccaacaagggtctgggtcggggcg
ggtccagaccccgggccctgcccagcaggcgggctcaggcttcaccctcg
gatctcgccgcagggccaatccagcctctggggcgcacccgggcggcttt
tccgggcccccagcttcctctggccgtcccgcccctcactctcgcccccg
gccccagtctggccgggcctcgcggcggcggcggcaccaacagtggcggc
gattgggctgcgccccgccgcgtccccgagtcccgggagtcggcgcggcg
cggtgagtgcttgcgtggcgcggggcggcgtgggctgctgggtccacctt
tgtgtgcggcggcgcctggactgcacgcgctaaggcgccgggtgcaagga
gctgggaactccgcggcccttacccgcagggcaccggcaccctgatccac
gatgaccgctggggctctagggtccggagtagctgagagcacccctgctt
ggccgctccctcctcggggggctgagacccgctgggatttgtgggatctg
atgactcccaagtctggggcttgtggggcccgaaacggggtgggtgactg
attattcaggccctggtgtggagtagggatgcagcaggtagtcactgg
tattagggggtgcagccttgtatgtgggagaatgcagggaaaagcacacg
gtgtacttctgggctgccttggatggttctgccagacggtaggggaaatt
aattcagaggaagccagcaaggtgggagagtcaaggagaaaacctcagaa
cagaacactaggatgagtcctgaataatggaaagcagggatctgccctct
ccaaatgttctcatttccctgccctgcagccccgtggggggtgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_58402480_58403380
seq2: B6Ng01-098L07.b_47_944 (reverse)

seq1  CCAGTGACCTACCTGCCTGCATCCCTACTCCACACCCAGGGCCTGAATAA  50
      ||||||| ||||||| |||||||||||||||||| |||||||||||||||
seq2  CCAGTGA-CTACCTG-CTGCATCCCTACTCCACA-CCAGGGCCTGAATAA  47

seq1  TCAGTCACCCACCCCGTTTCGGGCCCCACAAGCCCCAGACTTGGGAGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCACCCACCCCGTTTCGGGCCCCACAAGCCCCAGACTTGGGAGTCA  97

seq1  TCAGATCCCACAAATCCCAGCGGGTCTCAGCCCCCCGAGGAGGGAGCGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATCCCACAAATCCCAGCGGGTCTCAGCCCCCCGAGGAGGGAGCGGC  147

seq1  CAAGCAGGGGTGCTCTCAGCTACTCCGGACCCTAGAGCCCCAGCGGTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGGGGTGCTCTCAGCTACTCCGGACCCTAGAGCCCCAGCGGTCAT  197

seq1  CGTGGATCAGGGTGCCGGTGCCCTGCGGGTAAGGGCCGCGGAGTTCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGATCAGGGTGCCGGTGCCCTGCGGGTAAGGGCCGCGGAGTTCCCAG  247

seq1  CTCCTTGCACCCGGCGCCTTAGCGCGTGCAGTCCAGGCGCCGCCGCACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGCACCCGGCGCCTTAGCGCGTGCAGTCCAGGCGCCGCCGCACAC  297

seq1  AAAGGTGGACCCAGCAGCCCACGCCGCCCCGCGCCACGCAAGCACTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGGACCCAGCAGCCCACGCCGCCCCGCGCCACGCAAGCACTCACC  347

seq1  GCGCCGCGCCGACTCCCGGGACTCGGGGACGCGGCGGGGCGCAGCCCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCGCGCCGACTCCCGGGACTCGGGGACGCGGCGGGGCGCAGCCCAAT  397

seq1  CGCCGCCACTGTTGGTGCCGCCGCCGCCGCGAGGCCCGGCCAGACTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGCCACTGTTGGTGCCGCCGCCGCCGCGAGGCCCGGCCAGACTGGGG  447

seq1  CCGGGGGCGAGAGTGAGGGGCGGGACGGCCAGAGGAAGCTGGGGGCCCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGGCGAGAGTGAGGGGCGGGACGGCCAGAGGAAGCTGGGGGCCCGG  497

seq1  AAAAGCCGCCCGGGTGCGCCCCAGAGGCTGGATTGGCCCTGCGGCGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCCGCCCGGGTGCGCCCCAGAGGCTGGATTGGCCCTGCGGCGAGAT  547

seq1  CCGAGGGTGAAGCCTGAGCCCGCCTGCTGGGCAGGGCCCGGGGTCTGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGGTGAAGCCTGAGCCCGCCTGCTGGGCAGGGCCCGGGGTCTGGAC  597

seq1  CCGCCCCGACCCAGACCCTTGTTGGACCCCGACGGGGGAAGACCCAGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCGACCCAGACCCTTGTTGGACCCCGACGGGGGAAGACCCAGTAC  647

seq1  TCTGAGGAGGAGGAGGAGGTGTTGGGCTACTCGCTGCCCATCCCCCACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGAGGAGGAGGAGGTGTTGGGCTACTCGCTGCCCATCCCCCACAC  697

seq1  GGATCCTAGCACTTCCAAGAGCCGAAGTTTCTTTTTCGGTGAGAGGGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCTAGCACTTCCAAGAGCCGAAGTTTCTTTTTCGGTGAGAGGGGAC  747

seq1  AGGTGACCGGCCACTGACCACTCCCACCCTCGGAACTGCTGGCTCCAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGACCGGCCACTGACCACTCCCACCCTCGGAACTGCTGGCTCCAAGC  797

seq1  CCCGCTGCAATCCAGCTGTCCCCATTCAGTCCAGAATTTCTCCCCTCGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTGCAATCCAGCTGTCCCCATTCAGTCCAGAATTTCTCCCCTCGAC  847

seq1  ACCAGGCCAGCACCGCGGCTCGGAAAGGGTTAACTCGACAGCGAAGAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCCAGCACCGCGGCTCGGAAAGGGTTAACTCGACAGCGAAGAATT  897

seq1  C  901
      |
seq2  C  898

seq1: chr9_58247282_58247527
seq2: B6Ng01-098L07.g_72_317

seq1  TATTAGGGGGTGCAGCCTTGTATGTGGGAGAATGCAGGGAAAAGCACACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGGGGTGCAGCCTTGTATGTGGGAGAATGCAGGGAAAAGCACACG  50

seq1  GTGTACTTCTGGGCTGCCTTGGATGGTTCTGCCAGACGGTAGGGGAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTTCTGGGCTGCCTTGGATGGTTCTGCCAGACGGTAGGGGAAATT  100

seq1  AATTCAGAGGAAGCCAGCAAGGTGGGAGAGTCAAGGAGAAAACCTCAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGAGGAAGCCAGCAAGGTGGGAGAGTCAAGGAGAAAACCTCAGAA  150

seq1  CAGAACACTAGGATGAGTCCTGAATAATGGAAAGCAGGGATCTGCCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACACTAGGATGAGTCCTGAATAATGGAAAGCAGGGATCTGCCCTCT  200

seq1  CCAAATGTTCTCATTTCCCTGCCCTGCAGCCCCGTGGGGGGTGGGG  246
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGTTCTCATTTCCCTGCCCTGCAGCCCCGTGGGGGGTGGGG  246