BAC Information

Click to search

BAC

Clone NameB6Ng01-099O18
Chromosome9 (Build37)
Map Location 89,441,364 - 89,626,095
singlet/doubletdoublet
Overlap geneAF529169, Tmed3, B230218L05Rik
Upstream gene4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
Downstream geneRasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099O18.bB6Ng01-099O18.g
ACCDH909578DH909579
length2361,054
definitionDH909578|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O18, 5' end.DH909579|Mus musculus domesticus DNA, BAC clone: B6Ng01-099O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,441,364 - 89,441,599)(89,625,044 - 89,626,095)
sequence
ctggactggcttactttcccaagggtggccctggtctccagttttctgag
caggacattacgtttagctttatattcaatccgtgtcaactttgtaaaga
agatggcaagttcttgtagcttgtggacttgcagctctgtgggtccttgg
gaaaaaaagagactgggggtgggagagtaggaagcgtgggagactgtgag
aaaggggcggagtgaagagggtaagagggaagtgga
gaattctgacatctgctgggaaagtagggactagagcctggaaaaggata
gttatagtgattttattttatatatttgttgtagctttcttttgatgatc
atagtgatatatatttattttaggaacaaaaagaaaaaaattgaatccct
cccgaggcttattattacctagactacagtcaacatgttggtgtattttc
taatagctttttggatgaacatcaataacaatgcctttaacaattatttg
tgaagtagcctactcattatgtgaatcactgctaaatgccaaggatccaa
cagtgaaaaataaaacagatatgaatgtttatttcctaagggaacttaaa
tttctatatttgtattaatggagtagtcaatataaccatatcttgcattc
taaaaatagttactgtttgcttcacattttggtcagttggttgtatgttt
gtgggtgttttacctatgttttagacttactcattttattttatgtgtgt
gagtgtttttgcctttatatatccatatcagatgtatacctggttcccat
agaagtcacaaggtattgggctccctggaacaactggacttatggattac
tgtgagctaccaagtaggttctgggattcaaaccagggacctctgaacaa
gtaacatgtgctcttaactgttgagctagtgctctagccctggccaagtg
ttttatatacaacatctgaagaaatcttcagaataaccctaggaataagt
aactactattttcatccccattatagatgagggaactctctcataggcat
tagataacctagttcagcaatatagcttaaaatcaagccaggatatgatc
atacctagactttgaaataatcatttctgcatagaatagcagtaaattaa
tgctttcctttttcttctctttgcaggtctgattactcctgtggctcaga
gacccttagttagagacacctggatggatgatgaccctgatttgaggact
tgatggaaactcctctcttaaagcctgtgtggctaggggaggcttcggtt
gacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89441364_89441599
seq2: B6Ng01-099O18.b_54_289

seq1  CTGGACTGGCTTACTTTCCCAAGGGTGGCCCTGGTCTCCAGTTTTCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTGGCTTACTTTCCCAAGGGTGGCCCTGGTCTCCAGTTTTCTGAG  50

seq1  CAGGACATTACGTTTAGCTTTATATTCAATCCGTGTCAACTTTGTAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACATTACGTTTAGCTTTATATTCAATCCGTGTCAACTTTGTAAAGA  100

seq1  AGATGGCAAGTTCTTGTAGCTTGTGGACTTGCAGCTCTGTGGGTCCTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAAGTTCTTGTAGCTTGTGGACTTGCAGCTCTGTGGGTCCTTGG  150

seq1  GAAAAAAAGAGACTGGGGGTGGGAGAGTAGGAAGCGTGGGAGACTGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAGAGACTGGGGGTGGGAGAGTAGGAAGCGTGGGAGACTGTGAG  200

seq1  AAAGGGGCGGAGTGAAGAGGGTAAGAGGGAAGTGGA  236
      ||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGCGGAGTGAAGAGGGTAAGAGGGAAGTGGA  236

seq1: chr9_89625044_89626095
seq2: B6Ng01-099O18.g_69_1122 (reverse)

seq1  GGTCAACCGAAGCCT-CCCTAGCCACACAGCTTTTAAGAGA-GAGTTTCC  48
      ||||||||||||||| ||||||||||||||  ||||||||| ||||||||
seq2  GGTCAACCGAAGCCTCCCCTAGCCACACAGGCTTTAAGAGAGGAGTTTCC  50

seq1  ATC-AGTCCTCAACTCAGTGTCATCATCCATCATGGTGTCTCTAACTTAG  97
      ||| ||||||||| |||| |||||||||||||  ||||||||||||| ||
seq2  ATCAAGTCCTCAAATCAGGGTCATCATCCATCCAGGTGTCTCTAACTAAG  100

seq1  GGTCTCTGAGCCACAGGAGTAATCAGACCTAGCAAGAGAAGAAAAAGGGA  147
      ||||||||||||||||||||||||||||||   ||||||||||||| |||
seq2  GGTCTCTGAGCCACAGGAGTAATCAGACCTGCAAAGAGAAGAAAAA-GGA  149

seq1  AAGCATTAATTTACTGCTATTCTATGCAG-AATGATTATTTCAAAGTCTA  196
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAGCATTAATTTACTGCTATTCTATGCAGAAATGATTATTTCAAAGTCTA  199

seq1  GGTATGATCATATCCTGGCTTGATTCTAAGCTATATTGCCTGAACTAGGT  246
      ||||||||||||||||||||||||| |||||||||||| |||||||||||
seq2  GGTATGATCATATCCTGGCTTGATTTTAAGCTATATTG-CTGAACTAGGT  248

seq1  TATCTAATGCCTATGAGAGAGTTCCCTCATCTATAATGGGGATGAAAATA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTAATGCCTATGAGAGAGTTCCCTCATCTATAATGGGGATGAAAATA  298

seq1  GTAGTTACTTATTCCTAGGGTTATTCTGAAGATTTCTTCAGATGTTGTAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTACTTATTCCTAGGGTTATTCTGAAGATTTCTTCAGATGTTGTAT  348

seq1  ATAAAACACTTGGCCAGGGCTAGAGCACTAGCTCAACAGTTAAGAGCACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACACTTGGCCAGGGCTAGAGCACTAGCTCAACAGTTAAGAGCACA  398

seq1  TGTTACTTGTTCAGAGGTCCCTGGTTTGAATCCCAGAACCTACTTGGTAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACTTGTTCAGAGGTCCCTGGTTTGAATCCCAGAACCTACTTGGTAG  448

seq1  CTCACAGTAATCCATAAGTCCAGTTGTTCCAGGGAGCCCAATACCTTGTG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTAATCCATAAGTCCAGTTGTTCCAGGGAGCCCAATACCTTGTG  498

seq1  ACTTCTATGGGAACCAGGTATACATCTGATATGGATATATAAAGGCAAAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTATGGGAACCAGGTATACATCTGATATGGATATATAAAGGCAAAA  548

seq1  ACACTCACACACATAAAATAAAATGAGTAAGTCTAAAACATAGGTAAAAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACACATAAAATAAAATGAGTAAGTCTAAAACATAGGTAAAAC  598

seq1  ACCCACAAACATACAACCAACTGACCAAAATGTGAAGCAAACAGTAACTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAAACATACAACCAACTGACCAAAATGTGAAGCAAACAGTAACTA  648

seq1  TTTTTAGAATGCAAGATATGGTTATATTGACTACTCCATTAATACAAATA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGAATGCAAGATATGGTTATATTGACTACTCCATTAATACAAATA  698

seq1  TAGAAATTTAAGTTCCCTTAGGAAATAAACATTCATATCTGTTTTATTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTTAAGTTCCCTTAGGAAATAAACATTCATATCTGTTTTATTTT  748

seq1  TCACTGTTGGATCCTTGGCATTTAGCAGTGATTCACATAATGAGTAGGCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGTTGGATCCTTGGCATTTAGCAGTGATTCACATAATGAGTAGGCT  798

seq1  ACTTCACAAATAATTGTTAAAGGCATTGTTATTGATGTTCATCCAAAAAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACAAATAATTGTTAAAGGCATTGTTATTGATGTTCATCCAAAAAG  848

seq1  CTATTAGAAAATACACCAACATGTTGACTGTAGTCTAGGTAATAATAAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGAAAATACACCAACATGTTGACTGTAGTCTAGGTAATAATAAGC  898

seq1  CTCGGGAGGGATTCAATTTTTTTCTTTTTGTTCCTAAAATAAATATATAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGAGGGATTCAATTTTTTTCTTTTTGTTCCTAAAATAAATATATAT  948

seq1  CACTATGATCATCAAAAGAAAGCTACAACAAATATATAAAATAAAATCAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGATCATCAAAAGAAAGCTACAACAAATATATAAAATAAAATCAC  998

seq1  TATAACTATCCTTTTCCAGGCTCTAGTCCCTACTTTCCCAGCAGATGTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTATCCTTTTCCAGGCTCTAGTCCCTACTTTCCCAGCAGATGTCA  1048

seq1  GAATTC  1052
      ||||||
seq2  GAATTC  1054