BAC Information

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BAC

Clone NameB6Ng01-100N07
Chromosome9 (Build37)5 (Build37)
Map Location 64,043,842 - 64,045,021125,892,877 - 125,893,012
singlet/doubletsingletsinglet
Overlap geneMap2k1
Upstream geneMap2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009, Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5
Downstream geneUchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100N07.bB6Ng01-100N07.g
ACCDH910209DH910210
length1,155488
definitionDH910209|Mus musculus domesticus DNA, BAC clone: B6Ng01-100N07, 5' end.DH910210|Mus musculus domesticus DNA, BAC clone: B6Ng01-100N07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,043,842 - 64,045,021)(125,892,877 - 125,893,012)
sequence
gaattcatttcctaatctcaaagggcactgtggaatagcttcccaaagct
gcctgctgccccccactcttcctctccccatattttccccctctatcttc
tacacatgacagctagaactcctccagaatagcccctatacagactgcta
tggctcccgtttgccttgaaacacagtccaaacaaagcccctttggctgg
ctctgaaaacttcccaatgtttcttatctccctctctccctgagctaatc
caggttggcctgactctaattgcccagtgtgttaagtcctgccttcttct
cttttgctgttccctgcatccgaaatgtcttcctgtctacctgccctccc
gtgtccacttctggtgtctagagcctgagtccccttcccgacttgggaga
tttacctgagcttcttcccactgtcccagcagaagcctcaaagggcacag
gagaggcccagcacttctcaacagcttatctaagcctccagttctccccc
aacctttcagggccaggtgttggtaagccaagcagtgtgaagtaaccact
gggctcccaagctgctaggaagcccataacatactgaatggtactccctt
tcctgccccatcgggccaattcactttagcaatggggaatatcttcttct
tcttttttttttttttttggtttttcgagacagggtttctctgtatagtc
ctggctgtcctggaactcactttgtagaccaggctggcctcgaactcaga
aatctgcctgcctctgcctcccaagtgctggaataaaggcgtgcgccacc
atgcccggctggggaatatcttctttaaaaaaaaaaaaaaaaaaaagcag
atcaaagaataagggcagagggttcagggttcatcattcagagaaaagag
tgcttattctagcaccaaaaggaaaccaaacaccacaacaaaaaaggtat
atgtaaactaactggataaattattcttcttgacaccaattaaccacggt
tcaagcacattatgggcaggttacttcttaacatttcctacctgctaaac
aaggtctacaatgcctcgggagccactgtgtagctcatagaatcttgcct
agtcatagttcaaaggtcaacccttcgcagcttgtaacccaaagggacag
tgtac
aaaatcccagactatttaaaccagtgattctcaaccgatggatcaaaggg
gagtgtccaacaattctttcacagaggttgcctaaattcataagaaaata
cagatatttacattatgattcacaacagtagcaaagatacagttatgaac
tagtaacaaaaataactgtatggttggggcccactacaacatcacgatga
gctgtgtcaaaggattgcaacactggcaaggttgagaatcactgatttaa
acaataagaagattctgtgctattattatataagattcggcaattattat
tatgactcaccatatacattactagataaaaataagaataagggactggc
caggcagtagtggcgcatgcctttaatcccaaaacctgggaggcagaggc
aggcgaatttctgagttggaggccagcctggtctacagagtgagttccag
gatagccagggctacacagataaaccctgtctcgataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_64043842_64045021
seq2: B6Ng01-100N07.b_49_1203

seq1  GAATTCATTTCCTAATCTCAAAGGGCACTGTGGAATAGCTTCCCAAAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCTAATCTCAAAGGGCACTGTGGAATAGCTTCCCAAAGCT  50

seq1  GCCTGCTGCCCCCCACTCTTCCTCTCCCCATATTTTCCCCCTCTATCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTGCCCCCCACTCTTCCTCTCCCCATATTTTCCCCCTCTATCTTC  100

seq1  TACACATGACAGCTAGAACTCCTCCAGAATAGCCCCTATACAGACTGCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATGACAGCTAGAACTCCTCCAGAATAGCCCCTATACAGACTGCTA  150

seq1  TGGCTCCCGTTTGCCTTGAAACACAGTCCAAACAAAGCCCCTTTGGCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCCGTTTGCCTTGAAACACAGTCCAAACAAAGCCCCTTTGGCTGG  200

seq1  CTCTGAAAACTTCCCAATGTTTCTTATCTCCCTCTCTCCCTGAGCTAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAACTTCCCAATGTTTCTTATCTCCCTCTCTCCCTGAGCTAATC  250

seq1  CAGGTTGGCCTGACTCTAATTGCCCAGTGTGTTAAGTCCTGCCTTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGGCCTGACTCTAATTGCCCAGTGTGTTAAGTCCTGCCTTCTTCT  300

seq1  CTTTTGCTGTTCCCTGCATCCGAAATGTCTTCCTGTCTACCTGCCCTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGCTGTTCCCTGCATCCGAAATGTCTTCCTGTCTACCTGCCCTCCC  350

seq1  GTGTCCACTTCTGGTGTCTAGAGCCTGAGTCCCCTTCCCGACTTGGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCACTTCTGGTGTCTAGAGCCTGAGTCCCCTTCCCGACTTGGGAGA  400

seq1  TTTACCTGAGCTTCTTCCCACTGTCCCAGCAGAAGCCTCAAAGGGCACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGAGCTTCTTCCCACTGTCCCAGCAGAAGCCTCAAAGGGCACAG  450

seq1  GAGAGGCCCAGCACTTCTCAACAGCTTATCTAAGCCTCCAGTTCTCCCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCCCAGCACTTCTCAACAGCTTATCTAAGCCTCCAGTTCTCCCCC  500

seq1  AACCTTTCAGGGCCAGGTGTTGGTAAGCCAAGCAGTGTGAAGTAACCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTCAGGGCCAGGTGTTGGTAAGCCAAGCAGTGTGAAGTAACCACT  550

seq1  GGGCTCCCAAGCTGCTAGGAAGCCCATAACATACTGAATGGTACTCCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCCAAGCTGCTAGGAAGCCCATAACATACTGAATGGTACTCCCTT  600

seq1  TCCTGCCCCATCGGGCCAATTCACTTTAGCAATGGGGAATATCTTCTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCCCATCGGGCCAATTCACTTTAGCAATGGGGAATATCTTCTTCT  650

seq1  TCTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTTTTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGTC  700

seq1  CTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGA  750

seq1  AATCTGCCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCGTGCGCCAC  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AATCTGCCTGCCTCTGCCTCCCAAGTGCTGGAA-TAAAGGCGTGCGCCAC  799

seq1  CATGCCCGGCTGGGGAATATCTTCTTAAAAAAAAAAAAAAAAAAAAAGCA  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATGCCCGGCTGGGGAATATCTTCTTTAAAAAAAAAAAAAAAAAAAAGCA  849

seq1  GATCAAAGAATAAGGGCAGAGGGTTCAGGGTTCATCAGTTCAGAG-AAAG  899
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  GATCAAAGAATAAGGGCAGAGGGTTCAGGGTTCATCA-TTCAGAGAAAAG  898

seq1  AGTGCTTA-TCTAGCACCAAAAAGGAAAACAAAACAACAACAACAAAAAA  948
      |||||||| ||||||||| ||||||||| ||||   || |||||  ||||
seq2  AGTGCTTATTCTAGCACC-AAAAGGAAACCAAA--CACCACAAC--AAAA  943

seq1  AAGTTATATGTAAAACTAACTGGATAAAATATTCTTTCTTGACACCAAAT  998
      ||| ||||||| |||||||||||||||| ||||| ||||||||||| |||
seq2  AAGGTATATGT-AAACTAACTGGATAAATTATTC-TTCTTGACACC-AAT  990

seq1  TAACCACGGTTCAAAGCACATAATGGCAAGTTTAACTTCTAAACATTTCC  1048
      |||||||||||| |||||||| ||||  || || |||||| |||||||||
seq2  TAACCACGGTTC-AAGCACATTATGGGCAGGTT-ACTTCTTAACATTTCC  1038

seq1  TACCTGCTAAAACAAGGGTCTACGAATGCCTCGGGAGCCACTTGGTTATG  1098
      |||||||| |||||| ||||||| ||||||||||||||||||  ||   |
seq2  TACCTGCT-AAACAA-GGTCTAC-AATGCCTCGGGAGCCACT--GTGTAG  1083

seq1  CTACATAGAATCCTTGCACTATGCAATGATCAGAAGGGCAGTCGCTGTCC  1148
      || |||||||| ||||| |||  ||  | ||| |||| ||  | || || 
seq2  CT-CATAGAAT-CTTGC-CTAGTCATAGTTCA-AAGGTCA-ACCCT-TC-  1126

seq1  AGCAGGCTGTGATCGCCAGAGGGACAGTGTAC  1180
       ||||  ||| |   ||| |||||||||||||
seq2  -GCAGCTTGTAA--CCCAAAGGGACAGTGTAC  1155

seq1: chr5_125892877_125893012
seq2: B6Ng01-100N07.g_428_563 (reverse)

seq1  TTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACT  50
      || |||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  TTATCGAGACAGGGTTTATCTGTGTAGCCCTGGCTATCCTGGAACTCACT  50

seq1  CTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCTTCTGCCTCC  100
      |||||||||||||||||||| ||||||||||| ||||||| |||||||||
seq2  CTGTAGACCAGGCTGGCCTCCAACTCAGAAATTCGCCTGCCTCTGCCTCC  100

seq1  CAAGTGCTGGGACTAAAGGCATGCGCCACCACTGCC  136
      || ||  ||||| |||||||||||||||| ||||||
seq2  CAGGTTTTGGGATTAAAGGCATGCGCCACTACTGCC  136