BAC Information

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BAC

Clone NameB6Ng01-101O17
Chromosome9 (Build37)
Map Location 30,259,593 - 30,411,021
singlet/doubletdoublet
Overlap geneSnx19, LOC666478
Upstream geneHnt
Downstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101O17.bB6Ng01-101O17.g
ACCDH910962DH910963
length7961,175
definitionDH910962|Mus musculus domesticus DNA, BAC clone: B6Ng01-101O17, 5' end.DH910963|Mus musculus domesticus DNA, BAC clone: B6Ng01-101O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,259,593 - 30,260,386)(30,409,828 - 30,411,021)
sequence
gaattctgtgtggcttggaggaagactaagcagtcacttacgagaagccc
aggtaaggcttccagaccaggtgatagcagaaaagaacttgaagaatgag
ggcaggtggcagcagctgtgaagatcctgagcatcgaagcagagcaggaa
agatgtagcttgactttggttctcatgggagctaaatgattcagaatata
ctacatacaagacagatgagagctcgctcacatggagccctgaagactca
catggagcctcgtgaagaacatagcaactgtccaccactggatgggatgc
aacctacaagcgtacctcatgatgacatgatcatgttggaaaaaatcacg
ttaacagtgctgtagacaattcatgaaaagaggtaaagcttcattgatgg
agacaaattaggaaagaggtaaactcagctttgtccactgccacaggatg
ctacaggtgataggttcatgagatgttgaggtagtagggtataatgttgg
attggggtcaaggacaagaagaaattgagaatgatttttacagcaattct
gccttgtgggttgagaactgtaactgatagagtgacatctttctgagcag
tgtacctggatatgactgagaggctgccactgcctaaagcaggagctttg
cctggaatgcaaacagggacagggacactaaggaagcatacgagactctg
tctctaatagttactagactctagatagagaatgtattttgcccatacat
ctgtctttagttttgttttttttgttttttttgggggggggggatg
gaattcagttactctaaagtcatccatatagggaagatcttataggaggc
aagcagacaatgagaagaatgcctgagaggtcttccctcagagcactcaa
ctgtttgagcctgagtccacccacaagcaggtgatagaggggccttgaga
tggttcctctcttcaggttactcagtcttgtgaattttcagcacaagttg
ggcagaggcagctgctatgctgagttctgccccattccagttcctgaaga
aaaaaaatattgctgttctcaagccattagtttggggaggttctttaagt
gtccctcttccttagctgagaaaatgaggcataaataaaggaagttagca
tttcacgtgaagggagaaatcagggggtgtttagaatcacagtacatcaa
aaaaatggatgtagagacgtggaaacagaattattttcacagatatttgc
tgtatttgtgtgaacagaaactcataagctttcaactagggtcttggaca
tcatcacagaaaatcattttttttttataaagtggaattcaaagagttaa
ttcttaggcaagataccagaaccagaatacagcccaagtgtccaaacatc
actaactatagcatctcttttcttaaggaacaaataagaaaactcattaa
tttatcaaccaaaactcaagacaacaacaataacaacaacaacacccaaa
aacaaagtagaaagacagacaaattttcaaaaagtgaaagcaaaatgcta
tctatcctatttggctatttcttaaagcagtgtcctgcagtacccattct
gttcctgcctcctttgggtccttgactttaatggactgtaaaccacagaa
cttgcactcttagttctctgggcagggggacagtgagtctcagacagcat
catattgcaaaccacaatgtacctgcggaggactgttgagggaagtcaca
tctgtcagcatagccttgtggttccagctgcctagcagattgcaagagtg
tgtccaagaataacatagaatcattagtgagaatctttcttaaaaagtaa
tagtgatttttaaagaaaagatggaagatatagatcaatagatgagcact
cacctcacatgttgagcctcacttagcccagtaattatagaaaaaggcca
atgatttcatgacaggtcagacttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_30259593_30260386
seq2: B6Ng01-101O17.b_49_844

seq1  GAATTCTGTGTGGCTTGGAGGAAGACTAAGCAGTCACTTACGAGAAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTGGCTTGGAGGAAGACTAAGCAGTCACTTACGAGAAGCCC  50

seq1  AGGTAAGGCTTCCAGACCAGGTGATAGCAGAAAAGAACTTGAAGAATGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAAGGCTTCCAGACCAGGTGATAGCAGAAAAGAACTTGAAGAATGAG  100

seq1  GGCAGGTGGCAGCAGCTGTGAAGATCCTGAGCATCGAAGCAGAGCAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGGCAGCAGCTGTGAAGATCCTGAGCATCGAAGCAGAGCAGGAA  150

seq1  AGATGTAGCTTGACTTTGGTTCTCATGGGAGCTAAATGATTCAGAATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTAGCTTGACTTTGGTTCTCATGGGAGCTAAATGATTCAGAATATA  200

seq1  CTACATACAAGACAGATGAGAGCTCGCTCACATGGAGCCCTGAAGACTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATACAAGACAGATGAGAGCTCGCTCACATGGAGCCCTGAAGACTCA  250

seq1  CATGGAGCCTCGTGAAGAACATAGCAACTGTCCACCACTGGATGGGATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGCCTCGTGAAGAACATAGCAACTGTCCACCACTGGATGGGATGC  300

seq1  AACCTACAAGCGTACCTCATGATGACATGATCATGTTGGAAAAAATCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTACAAGCGTACCTCATGATGACATGATCATGTTGGAAAAAATCACG  350

seq1  TTAACAGTGCTGTAGACAATTCATGAAAAGAGGTAAAGCTTCATTGATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAGTGCTGTAGACAATTCATGAAAAGAGGTAAAGCTTCATTGATGG  400

seq1  AGACAAATTAGGAAAGAGGTAAACTCAGCTTTGTCCACTGCCACAGGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATTAGGAAAGAGGTAAACTCAGCTTTGTCCACTGCCACAGGATG  450

seq1  CTACAGGTGATAGGTTCATGAGATGTTGAGGTAGTAGGGTATAATGTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGTGATAGGTTCATGAGATGTTGAGGTAGTAGGGTATAATGTTGG  500

seq1  ATTGGGGTCAAGGACAAGAAGAAATTGAGAATGATTTTTACAGCAATTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGTCAAGGACAAGAAGAAATTGAGAATGATTTTTACAGCAATTCT  550

seq1  GCCTTGTGGGTTGAGAACTGTAACTGATAGAGTGACATCTTTCTGAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGTGGGTTGAGAACTGTAACTGATAGAGTGACATCTTTCTGAGCAG  600

seq1  TGTACCTGGATATGACTGAGAGGCTGCCACTGCCTAAAGCAGGAGCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTGGATATGACTGAGAGGCTGCCACTGCCTAAAGCAGGAGCTTTG  650

seq1  CCTGGAATGCAAACAGGGACAGGGACACTAAGGAAGCATACGAGACTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATGCAAACAGGGACAGGGACACTAAGGAAGCATACGAGACTCTG  700

seq1  TCTCTAATAGTTACTAGACTCTAGATAGAGAATGTA-TTTGCCCATACAT  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTCTAATAGTTACTAGACTCTAGATAGAGAATGTATTTTGCCCATACAT  750

seq1  CTGTCTTTAGTTTTG-TTTTTTTGTTTTTTTTTGGGGGGGGGGAGG  794
      ||||||||||||||| |||||||||||||||| ||||||||||| |
seq2  CTGTCTTTAGTTTTGTTTTTTTTGTTTTTTTTGGGGGGGGGGGATG  796

seq1: chr9_30409828_30411021
seq2: B6Ng01-101O17.g_68_1242 (reverse)

seq1  GAAGTCTGTACTTCTGTCATTGAAAAACTCATTGGCCTTTTTTCTTATAT  50
      |||||||| ||  |||||| |||||   ||||||||||||||   |||| 
seq2  GAAGTCTG-AC--CTGTCA-TGAAA---TCATTGGCCTTTTT--CTATAA  41

seq1  ATACTGGGGCTTAAAATGAAGGCCTCATACATGTTAGGTGGGTGCTCATC  100
       |||| |||||  || |||  | |||| |||||| ||||| |||||||||
seq2  TTACT-GGGCT--AAGTGA--GGCTCA-ACATGTGAGGTGAGTGCTCATC  85

seq1  TATTGATCTATATCTCCAATCTTTCTTTTAAAAAATCACTTATTACTATT  150
      ||||||||||||||| | |||||| | || ||||||||| ||||||| ||
seq2  TATTGATCTATATCTTCCATCTTT-TCTTTAAAAATCAC-TATTACT-TT  132

seq1  TTAAGACAAGA-TCTCACTAATGGATCTATGTTAATCTTGGACACACTCT  199
      |||||| |||| |||||||||||  ||||||||| |||||||||||||||
seq2  TTAAGA-AAGATTCTCACTAATGATTCTATGTTATTCTTGGACACACTCT  181

seq1  TGCAATCTTGCTAAGCAGCTGGGACCACAGGCCTATGCTGACAGATGTGA  249
      ||||||| ||||| |||||||| |||||| | ||||||||||||||||||
seq2  TGCAATC-TGCTAGGCAGCTGGAACCACAAGGCTATGCTGACAGATGTGA  230

seq1  CTTCCCTCAACAGTCCTCCGCAGGTACATTGTGGTTTGCAATATGATGCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCAACAGTCCTCCGCAGGTACATTGTGGTTTGCAATATGATGCT  280

seq1  GTCTGAGACTCACTGTCCCCCTGCCCAGAGAACTAAGAGTGCAAGTTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGACTCACTGTCCCCCTGCCCAGAGAACTAAGAGTGCAAGTTCTG  330

seq1  TGGTTTACAGTCCATTAAAGTCAAGGACCCAAAGGAGGCAGGAACAGAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTACAGTCCATTAAAGTCAAGGACCCAAAGGAGGCAGGAACAGAAT  380

seq1  GGGTACTGCAGGACACTGCTTTAAGAAATAGCCAAATAGGATAGATAGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTGCAGGACACTGCTTTAAGAAATAGCCAAATAGGATAGATAGCA  430

seq1  TTTTGCTTTCACTTTTTGAAAATTTGTCTGTCTTTCTACTTTGTTTTTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTCACTTTTTGAAAATTTGTCTGTCTTTCTACTTTGTTTTTGG  480

seq1  GTGTTGTTGTTGTTATTGTTGTTGTCTTGAGTTTTGGTTGATAAATTAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGTTGTTGTTATTGTTGTTGTCTTGAGTTTTGGTTGATAAATTAAT  530

seq1  GAGTTTTCTTATTTGTTCCTTAAGAAAAGAGATGCTATAGTTAGTGATGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTCTTATTTGTTCCTTAAGAAAAGAGATGCTATAGTTAGTGATGT  580

seq1  TTGGACACTTGGGCTGTATTCTGGTTCTGGTATCTTGCCTAAGAATTAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGACACTTGGGCTGTATTCTGGTTCTGGTATCTTGCCTAAGAATTAAC  630

seq1  TCTTTGAATTCCACTTTATAAAAAAAAAATGATTTTCTGTGATGATGTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAATTCCACTTTATAAAAAAAAAATGATTTTCTGTGATGATGTCC  680

seq1  AAGACCCTAGTTGAAAGCTTATGAGTTTCTGTTCACACAAATACAGCAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCTAGTTGAAAGCTTATGAGTTTCTGTTCACACAAATACAGCAAA  730

seq1  TATCTGTGAAAATAATTCTGTTTCCACGTCTCTACATCCATTTTTTTGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTGAAAATAATTCTGTTTCCACGTCTCTACATCCATTTTTTTGAT  780

seq1  GTACTGTGATTCTAAACACCCCCTGATTTCTCCCTTCACGTGAAATGCTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTGATTCTAAACACCCCCTGATTTCTCCCTTCACGTGAAATGCTA  830

seq1  ACTTCCTTTATTTATGCCTCATTTTCTCAGCTAAGGAAGAGGGACACTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTTATTTATGCCTCATTTTCTCAGCTAAGGAAGAGGGACACTTA  880

seq1  AAGAACCTCCCCAAACTAATGGCTTGAGAACAGCAATATTTTTTTTCTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCTCCCCAAACTAATGGCTTGAGAACAGCAATATTTTTTTTCTTC  930

seq1  AGGAACTGGAATGGGGCAGAACTCAGCATAGCAGCTGCCTCTGCCCAACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGGAATGGGGCAGAACTCAGCATAGCAGCTGCCTCTGCCCAACT  980

seq1  TGTGCTGAAAATTCACAAGACTGAGTAACCTGAAGAGAGGAACCATCTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAAAATTCACAAGACTGAGTAACCTGAAGAGAGGAACCATCTCA  1030

seq1  AGGCCCCTCTATCACCTGCTTGTGGGTGGACTCAGGCTCAAACAGTTGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCCTCTATCACCTGCTTGTGGGTGGACTCAGGCTCAAACAGTTGAG  1080

seq1  TGCTCTGAGGGAAGACCTCTCAGGCATTCTTCTCATTGTCTGCTTGCCTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGAGGGAAGACCTCTCAGGCATTCTTCTCATTGTCTGCTTGCCTC  1130

seq1  CTATAAGATCTTCCCTATATGGATGACTTTAGAGTAACTGAATTC  1194
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGATCTTCCCTATATGGATGACTTTAGAGTAACTGAATTC  1175