BAC Information

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BAC

Clone NameB6Ng01-107P18
Chromosome9 (Build37)
Map Location 59,254,320 - 59,350,701
singlet/doubletdoublet
Overlap geneArih1, LOC621119
Upstream gene6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4
Downstream gene4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107P18.bB6Ng01-107P18.g
ACCDH915292DH915293
length1,204371
definitionDH915292|Mus musculus domesticus DNA, BAC clone: B6Ng01-107P18, 5' end.DH915293|Mus musculus domesticus DNA, BAC clone: B6Ng01-107P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,254,320 - 59,255,551)(59,350,326 - 59,350,701)
sequence
gaattctagaaagcggtaagcagccatgcaggagttgggacttgatgaat
cagggtcctacttgaagaaaagctgatgagccatctccccacccaaataa
aaacaatcacaatattttgaacacagttttactgaaggtaagtattttac
tctacacaatgctcagtgccgtcacctagctgagagcaactaactatcca
tgcactgtttttcagggctttatatgcaccataaacctgtaaatcttgta
ttggtgttacttattcctgcttgtctcatgaataaatgacaaaatggaaa
taacaaagaaactaattctaggccacatagaatccatctatgagcagtct
gggttcacacagtcaggtaagcagaccttgactttcaaactgaattcata
ctgaagctcaaatttttcattttttttaaaaaaattatttattattatcc
ataagtacactgtagctgtcttcagacacacactagaagagggcatcaga
tctcattaaggatggttgtgagccaccatgtggttgctgagatttgaact
caggaccttcgaaagagcagtcagtgctcttaactgctctctctccagcc
cctcatttttttttaaaaactgtacttaaagaggtttttgttgttgagat
aagatatttctacaaagctctagctgccctataactcattatgtaaaaca
ggctgtcctaaaaccctttctgagatgagtctgattcccaatgcaataat
taatgtgtgccagtgtgccactatgcctggctttaaaaggggaaaaaaaa
aaacctttttgaaaatctgagtgatatagacatggtgtgtacaggaatgt
acaagagactagaagatgatgctgggtgccctgcttcatcgctcagtctt
gttcctcttaagacacactcactgaacctggggttcctcaaattcagcta
ggctggtaaccactgacttgagggaatccacccatctctgaatttcagca
ctaaggttacagtgcacatggccacacctcttttacatggtgtgagatct
gacctcagatccttaatacttgggcagcaagcagtcagaatagaaattaa
cttgtacagagactcatgttttacacttaaggagccaactgctacgctgt
tcaaataaaactgaaggaataaccgatccattggggtggagcatggataa
aaat
atgtgtcttggtgtctatcaagcctagttcctttttcaaaggaaagcaga
attaggacttaaacagcctcacacccaaactcttattccttaaggtgcaa
tctgtcaggagaggactagaaaggtcagagagagagagtgtgagaggggg
agcgggagcaggagcaggagggggagagggagagcagatggggttaaccc
taaagccttttggcttcaggcacagctaaagaagcccaaagcaagtcctt
cagtccctctgcaactgtttatgctgcaagaattcaagtgcatttgcttg
ctattccttgggaaacttttcaactctcattacaatcattttgacatttt
gtgttctgctcctttattagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59254320_59255551
seq2: B6Ng01-107P18.b_45_1248

seq1  GAATTCTAGAAAGCGGTAAGCAGCCATGCAGGAGTTGGGACTTGATGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAAAGCGGTAAGCAGCCATGCAGGAGTTGGGACTTGATGAAT  50

seq1  CAGGGTCCTACTTGAAGAAAAGCTGATGAGCCATCTCCCCACCCAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTCCTACTTGAAGAAAAGCTGATGAGCCATCTCCCCACCCAAATAA  100

seq1  AAACAATCACAATATTTTGAACACAGTTTTACTGAAGGTAAGTATTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATCACAATATTTTGAACACAGTTTTACTGAAGGTAAGTATTTTAC  150

seq1  TCTACACAATGCTCAGTGCCGTCACCTAGCTGAGAGCAACTAACTATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACAATGCTCAGTGCCGTCACCTAGCTGAGAGCAACTAACTATCCA  200

seq1  TGCACTGTTTTTCAGGGCTTTATATGCACCATAAACCTGTAAATCTTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGTTTTTCAGGGCTTTATATGCACCATAAACCTGTAAATCTTGTA  250

seq1  TTGGTGTTACTTATTCCTGCTTGTCTCATGAATAAATGACAAAATGGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTACTTATTCCTGCTTGTCTCATGAATAAATGACAAAATGGAAA  300

seq1  TAACAAAGAAACTAATTCTAGGCCACATAGAATCCATCTATGAGCAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGAAACTAATTCTAGGCCACATAGAATCCATCTATGAGCAGTCT  350

seq1  GGGTTCACACAGTCAGGTAAGCAGACCTTGACTTTCAAACTGAATTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCACACAGTCAGGTAAGCAGACCTTGACTTTCAAACTGAATTCATA  400

seq1  CTGAAGCTCAAATTTTTCATTTTTTTTAAAAAAATTATTTATTATTATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCTCAAATTTTTCATTTTTTTTAAAAAAATTATTTATTATTATCC  450

seq1  ATAAGTACACTGTAGCTGTCTTCAGACACACACTAGAAGAGGGCATCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTACACTGTAGCTGTCTTCAGACACACACTAGAAGAGGGCATCAGA  500

seq1  TCTCATTAAGGATGGTTGTGAGCCACCATGTGGTTGCTGAGATTTGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTAAGGATGGTTGTGAGCCACCATGTGGTTGCTGAGATTTGAACT  550

seq1  CAGGACCTTCGAAAGAGCAGTCAGTGCTCTTAACTGCTCTCTCTCCAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCTTCGAAAGAGCAGTCAGTGCTCTTAACTGCTCTCTCTCCAGCC  600

seq1  CCTCATTTTTTTTTAAAAACTGTACTTAAAGAGGTTTTTGTTGTTGAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATTTTTTTTTAAAAACTGTACTTAAAGAGGTTTTTGTTGTTGAGAT  650

seq1  AAGATATTTCTACAAAGCTCTAGCTGCCCTATAACTCATTATGTAAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTTCTACAAAGCTCTAGCTGCCCTATAACTCATTATGTAAAACA  700

seq1  GGCTGTCCTAAAACCCTTTCTGAGATGAGTCTGATTCCCAATGCAATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCTAAAACCCTTTCTGAGATGAGTCTGATTCCCAATGCAATAAT  750

seq1  TAATGTGTGCCAGTGTGCCACTATGCCTGGCTTTAAAAGGGGAAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTGTGCCAGTGTGCCACTATGCCTGGCTTTAAAAGGGGAAAAAAAA  800

seq1  AAACCTTTTTGAAAATCTGAGTGATATAGACATGGTGTGTACAGGAATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTTTTTGAAAATCTGAGTGATATAGACATGGTGTGTACAGGAATGT  850

seq1  ACAAGAGACTAGAAGATGATGCTGGGTGCCCTGCTTCATCGCTCAGTCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGACTAGAAGATGATGCTGGGTGCCCTGCTTCATCGCTCAGTCTT  900

seq1  GTTCCTCTTAAGACACACTCACTGAACCTGGGGTTCCTCAAATTCAGCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCTTAAGACACACTCACTGAACCTGGGGTTCCTCAAATTCAGCTA  950

seq1  GGCTGGTAACCACTGACCTTGAGGGAATCCACCCATCTCTGAATTTCAGC  1000
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GGCTGGTAACCACTGA-CTTGAGGGAATCCACCCATCTCTGAATTTCAGC  999

seq1  ACTAAAGGTTACAGGTGCACATGGCCACACCTCTTTTACATGGGTGTTGA  1050
      ||| ||||||||| ||||||||||||||||||||||||||| |||||   
seq2  ACT-AAGGTTACA-GTGCACATGGCCACACCTCTTTTACAT-GGTGT--G  1044

seq1  AGATCTGAACTCAGATCC-TCATACTTGGGCAGCAAAGCAGTCAAGATTA  1099
      |||||||| ||||||||| | ||||||||||||| |||||||| ||| ||
seq2  AGATCTGACCTCAGATCCTTAATACTTGGGCAGC-AAGCAGTC-AGAATA  1092

seq1  GAAATTTAACTTGTACAGGAGAACTCATTGTTTTTACACTAAAGGAGCCA  1149
      |||| |||||||||||| ||| ||||||   ||||||||| |||||||||
seq2  GAAA-TTAACTTGTACA-GAG-ACTCAT--GTTTTACACTTAAGGAGCCA  1137

seq1  CACTGCCTTACAGCTGGTCCAAATAAACACCTGAAAGGGAATAAACAGGC  1199
       |||||  ||| ||| || |||||||  | |||||  ||||||| |    
seq2  -ACTGC--TAC-GCT-GTTCAAATAA--AACTGAA--GGAATAACC---G  1175

seq1  ATCCATTGTGGGTGGGAGGGCATGGATAAAAAT  1232
      |||||||| |||||   | ||||||||||||||
seq2  ATCCATTG-GGGTG---GAGCATGGATAAAAAT  1204

seq1: chr9_59350326_59350701
seq2: B6Ng01-107P18.g_68_444 (reverse)

seq1  CCTAAT-AAGGGGCAGAACACAAAATGTCAAAATGATTGTAATGAGAGTT  49
      |||||| |||| ||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAAAGGAGCAGAACACAAAATGTCAAAATGATTGTAATGAGAGTT  50

seq1  GAAAAGTTTCCCAAGGAATAGCAAGCAAATGCACTTGAATTCTTGCAGCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTTCCCAAGGAATAGCAAGCAAATGCACTTGAATTCTTGCAGCA  100

seq1  TAAACAGTTGCAGAGGGACTGAAGGACTTGCTTTGGGCTTCTTTAGCTGT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTTGCAGAGGGACTGAAGGACTTGCTTTGGGCTTCTTTAGCTGT  150

seq1  GCCTGAAGCCAAAAGGCTTTAGGGTTAACCCCATCTGCTCTCCCTCTCCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAGCCAAAAGGCTTTAGGGTTAACCCCATCTGCTCTCCCTCTCCC  200

seq1  CCTCCTGCTCCTGCTCCCGCTCCCCCTCTCACACTCTCTCTCTCTGACCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTGCTCCTGCTCCCGCTCCCCCTCTCACACTCTCTCTCTCTGACCT  250

seq1  TTCTAGTCCTCTCCTGACAGATTGCACCTTAAGGAATAAGAGTTTGGGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTCCTCTCCTGACAGATTGCACCTTAAGGAATAAGAGTTTGGGTG  300

seq1  TGAGGCTGTTTAAGTCCTAATTCTGCTTTCCTTTGAAAAAGGAACTAGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTGTTTAAGTCCTAATTCTGCTTTCCTTTGAAAAAGGAACTAGGC  350

seq1  TTGATAGACACCAAGACACATGAATTC  376
      |||||||||||||||||||||||||||
seq2  TTGATAGACACCAAGACACATGAATTC  377