BAC Information

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BAC

Clone NameB6Ng01-110C23
Chromosome9 (Build37)1 (Build37)
Map Location 66,236,720 - 66,237,160152,003,714 - 152,004,223
singlet/doubletsingletsinglet
Overlap geneHerc1
Upstream gene5430433E21Rik, Rasl12, Ostb, Mtfmt, Spg21, Ankdd1a, Plekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2
Downstream geneFbxl22, Usp3, Car12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110C23.bB6Ng01-110C23.g
ACCDH916881DH916882
length1,069502
definitionDH916881|Mus musculus domesticus DNA, BAC clone: B6Ng01-110C23, 5' end.DH916882|Mus musculus domesticus DNA, BAC clone: B6Ng01-110C23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,236,720 - 66,237,160)(152,003,714 - 152,004,223)
sequence
gaattcagtaacagtgttgcctattcagtgacattcagaattgcttctac
tattgtaagagagatagtgaaagaaatcagacattactatctactacata
gagttagaaatctcagggcaagcttagcaaagtaagtttagaattattac
tattatagttatgtatggcagactacattattagtagaaagaccccaatc
tattacttagagtaaaagccaagttgctaccatatacaggaatttacaat
ggtttaggaagtagcttgggctgtggttttagagtattgcattattcatg
agaaggttaggtagaacgaaattccctaattagaactatgacttgggcat
gaaagcccttgccccaggagtgtaaagacctcacacctggcttctaagaa
tatagctgaccttagatagatctgactttgtctcagttgttttattgccc
tgttcctgccagtcttagtgtttgcattcctctgttttgtgtaagagtca
ttaagcatccggtaacctcattgtaccttgccgatgtgtcacttaacttc
cctattttcttctgtataaaaagtttgatgctcgatttgacaaattttat
tcagatacagcacactctcttgtgtcatgtctgtttgtcacccttttcat
agactctttgcccacctgtccgaaaccctgaattctcccatggattgaaa
gagaccgactgaggctggtccgtggcaaccaagtccaaaacaaaaacaaa
aaaaatgtcatttatttccagtacatgcatgaactttaaatttaatatca
acactgcatatatgattacataagaacataataaaattagaaccaaacct
acctagcaatctacctagtatctttttaaaaatttttttattagatattt
tcttcatttatatttcaatgctatccaaagttccctataccctccctcac
cgctccctaccacccactccacttctggccaggtgttccctgtactgggg
catataaagtttgcagacaggggcctctcttccataatggccgactagtc
atctttctgctaatatgca
gaattccattattaagacacaaattaagtttgtcttaagtcttgaaatgg
agtaagaccgaggatgaagtagagtcagaattggggtacagacgaggcag
aattagaaatgggaggagggactgctcatggatcatgaatggctagggat
gggctcagaggaagctagcacatgtataaatgcacactaaactattactc
atgtgattcagccaaatggaatcttatattcaaagaacattaggaaatgc
ataggcagaggcagaatatcctctaagactctccagactaagttcaaggt
tagtctggtctatgtagacagttccagcacagttgtggctacatagagat
atcctgcaatatatattattatatatattgtattatatgtaacatatata
atatatattattatatgtattatattatatgtaaaatatataatactata
tatatgtatgtatgtatatatatatatatatatatatatacatatatata
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_66236720_66237160
seq2: B6Ng01-110C23.b_782_1115

seq1  CAAAACAAAAACAAAAACCTATTGGTAGCTTTGGGCTTTTTTTTTTTTTC  50
      |||||||||||||||||   | ||               |  ||| ||||
seq2  CAAAACAAAAACAAAAA--AAATG---------------TCATTTATTTC  33

seq1  CTTAAAAATTGAAGAAAAAAAATCCTTTTCAAGTATGTATACCTAGTATA  100
      |     | |  | | |  ||    ||||  ||  || ||        |||
seq2  C-----AGTACATGCATGAA----CTTT--AA--ATTTA--------ATA  62

seq1  GAAAATCTCAAATGTAGATGAACAGACATAAAAGTAAATTATTTCTTTCA  150
        ||  ||  |   || ||||    |||||| |               ||
seq2  TCAACACTGCA---TATATGA--TTACATAAGA--------------ACA  93

seq1  TTGTTACAATAGTTCTTTAACTATTGTTAACACATTGGTAGACAGATTTC  200
      |  | | | |||      ||| |     |||       ||   ||   ||
seq2  TAATAAAATTAG------AACCA-----AAC------CTACCTAGCAATC  126

seq1  TAAATATATGTGCATTATGCATGTCTTTAAAAAAATTTTTTTTCATTAGG  250
      ||  ||            | || | ||||||||    |||||| ||||| 
seq2  TACCTA------------GTATCTTTTTAAAAA----TTTTTTTATTAGA  160

seq1  TATTTTCTTCATTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCC  300
      ||||||||||||||| |||| |||||||||||  ||||| ||| ||||||
seq2  TATTTTCTTCATTTATATTT-CAATGCTATCC--AAAGTTCCCTATACCC  207

seq1  CCCCCCCCCCCACTCCCCTATCCACCCACTCCCACTTTTTGGCTCTGGCC  350
       ||| | || |    ||||| ||||||||| |||| || |||| | ||  
seq2  TCCCTCACCGC---TCCCTA-CCACCCACT-CCAC-TTCTGGC-CAGGTG  250

seq1  TTCCCCTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTT  400
      || ||||||||||||||||||||||||||| || |  | ||||||||| |
seq2  TT-CCCTGTACTGGGGCATATAAAGTTTGC-AGAC--AGGGGCCTCTC-T  295

seq1  TCCAGTGATGGCCGACTAGGCCATCTTT-TGATACATATGCA  441
      |||| | ||||||||||| | ||||||| || || |||||||
seq2  TCCA-TAATGGCCGACTA-GTCATCTTTCTGCTA-ATATGCA  334

seq1: chr1_152003714_152004223
seq2: B6Ng01-110C23.g_62_563

seq1  GAATTCCATTATTAAGACACAAATTAAGTTTGTCTTAAGTCTTGAAATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTATTAAGACACAAATTAAGTTTGTCTTAAGTCTTGAAATGG  50

seq1  AGTAAGACCGAGGATGAAGTAGAGTCAGAATTGGGGTACAGACGAGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGACCGAGGATGAAGTAGAGTCAGAATTGGGGTACAGACGAGGCAG  100

seq1  AATTAGAAATGGGAGGAGGGACTGCTCATGGATCATGAATGGCTAGGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAAATGGGAGGAGGGACTGCTCATGGATCATGAATGGCTAGGGAT  150

seq1  GGGCTCAGAGGAAGCTAGCACATGTATAAATGCACACTAAACTATTACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGAGGAAGCTAGCACATGTATAAATGCACACTAAACTATTACTC  200

seq1  ATGTGATTCAGCCAAATGGAATCTTATATTCAAAGAACATTAGGAAATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGATTCAGCCAAATGGAATCTTATATTCAAAGAACATTAGGAAATGC  250

seq1  ATAGGCAGAGGCAGAATATCCTCTAAGACTCTCCAGACTAAGTTCAAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCAGAGGCAGAATATCCTCTAAGACTCTCCAGACTAAGTTCAAGGT  300

seq1  TAGTCTGGTCTATGTAGACAGTTCCAGCACAGTTGTGGCTACATAGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTGGTCTATGTAGACAGTTCCAGCACAGTTGTGGCTACATAGAGAT  350

seq1  ATCCTGCAATATATATTATTATATATATTGTATTATATGTAACATATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCAATATATATTATTATATATATTGTATTATATGTAACATATATA  400

seq1  ATATATATTATTATATGTATTATATTATATGTAAAATATATAATACTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATTATTATATGTATTATATTATATGTAAAATATATAATACTATA  450

seq1  TATATGTATGTATGTATATATATATATATATATATATATATATATATACA  500
      |||||||||||||||||||||||||||||||||||||||| ||||||| |
seq2  TATATGTATGTATGTATATATATATATATATATATATATACATATATATA  500

seq1  TATATATATA  510
      ||        
seq2  TA--------  502