BAC Information

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BAC

Clone NameB6Ng01-110J18
Chromosome9 (Build37)
Map Location 28,437,956 - 28,608,626
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneLOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110J18.bB6Ng01-110J18.g
ACCDH917183DH917184
length1,0681,138
definitionDH917183|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J18, 5' end.DH917184|Mus musculus domesticus DNA, BAC clone: B6Ng01-110J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,437,956 - 28,439,040)(28,607,482 - 28,608,626)
sequence
gaattcctttattacaaggttaatagaaatatgcataattattaatattc
ctctttaagggagatgctcagagctgggtacattctgagtcatcttcaat
tagtgtgcagtatgtttgtacacattagaattaaaagagtcccacaacca
atttatacacagggctagactgtagcatgtgctataaatggctaccttcc
attaattgaccctaatttaggaaatatgccttcccattggtcaaaacaca
atgtcttcaaaccatttcttattctaagtgaatgatgtaatgatgtgact
gtgcatggagttctcattagtgacatgtagatttgttcttgacaggatgg
ggatcgtagagaagttctaacaagtacaagttgctagagtgaataaagta
gggtatcagacctgaacggctaggcagaatgctggcaggaatgaggcaac
caatatcccactttttccccccttccttattgtttctgtgaagagaagta
atgccatatattccctgatcgcccacagcctgttcttgttgccactggat
aaaccattctactgggctttggttcgaggctcattgctacagctgaacat
attgctgcacccatgtcctctcctacaaaaagcatcatctattccatttg
ctctgtcaactttctgcagtcagttctccctcagaacccccccccccccg
atccttttacctgtagaaacagtatctgactattttatcatctggctatt
tcaattaaattacattaagaaagcaaacagtaaggttaaaaatgatcact
atatcagtccaactttctaccatccccagaaaggttaattgaaaagcggc
catcttgccgacgtttagacaaatgaggataattatgtggtctccagctc
tttgcgaggttaattgcttagatgtatgagccttgagacaaagaaagaat
aaatcagaacaggatatgatctgatcatataatactgttatcacgtacac
tcaacaataaaccctatagaagaacttgctcactgcatgatgcatgccag
ttagtagtatcagacatc
gaattcagacctcctacatgtcctggtgagatatggttttattttatgct
ggagaggataagacccaatctatttgagttcagttttcttttttagttgt
atttgatgagagaaatgatagcgaacatgaacaaatgattatgaattaca
gatacatgaatacttgctcggggtggggtgacatcacaaaccatgcacgc
tccactgagtccatttgtaatggttgtctccactgtgtcacttacagagg
ttatttatagacgcacatttcctattttaatttgcacaattcaagcaact
gaccatgatcagagaaactgcagagggtaatagagtcattcttcccatcc
tctgctcttcccagggcaggagatggctgctctcagagaggcttcctttg
ttcttttcaaccctgcctggcaggctgtgcccctacccctacccccaaga
gctctggccacactcaaaattaggatcacaagttttaatttacatcacag
tattttcgagtcaaaaatagacccagggatcgccaggttctccctccttg
tttttcagagaaggaaacactttggctttagccccaattctgtcaagtgt
ttattatgaggtgataacccagatgcatgacctatgctgacctaagcctc
tctcacatcagggatcctgggtacttcctgtctcccacctgtgtctttta
gctttctcctctttttcaccccttcctttaaagggggtcacagccacctc
ctattaaaacaatctgtgctcccacccagtcttagtcacggtgtgacctt
gttgaccttgttgttttcttaatttctttcatctgcttctcaagctgaat
agctgcccagtgagcataggtacctcacatttcatctagaggattgaaag
gcagtaatcggagagtactctcagtgccagtcccaagctgtggcaaacac
agtgctcaggctcaggtctaaagtcttttacttcttttgcttctgcagat
ctcaatgagaagaaagctcagaggcgcccaatgcagaagatctcactggc
tgactcaaagggaaagctcttagaaagctctattgtgtttatgaggaacc
agcgttggaatggtacccgacttcttcatggtctccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28437956_28439040
seq2: B6Ng01-110J18.b_46_1113

seq1  GAATTCCTTTATTACAAGGTTAATAGAAATATGCATAATTATTAATATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTATTACAAGGTTAATAGAAATATGCATAATTATTAATATTC  50

seq1  CTCTTTAAGGGAGATGCTCAGAGCTGGGTACATTCTGAGTCATCTTCAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAAGGGAGATGCTCAGAGCTGGGTACATTCTGAGTCATCTTCAAT  100

seq1  TAGTGTGCAGTATGTTTGTACACATTAGAATTAAAAGAGTCCCACAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGCAGTATGTTTGTACACATTAGAATTAAAAGAGTCCCACAACCA  150

seq1  ATTTATACACAGGGCTAGACTGTAGCATGTGCTATAAATGGCTACCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATACACAGGGCTAGACTGTAGCATGTGCTATAAATGGCTACCTTCC  200

seq1  ATTAATTGACCCTAATTTAGGAAATATGCCTTCCCATTGGTCAAAACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTGACCCTAATTTAGGAAATATGCCTTCCCATTGGTCAAAACACA  250

seq1  ATGTCTTCAAACCATTTCTTATTCTAAGTGAATGATGTAATGATGTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTCAAACCATTTCTTATTCTAAGTGAATGATGTAATGATGTGACT  300

seq1  GTGCATGGAGTTCTCATTAGTGACATGTAGATTTGTTCTTGACAGGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGGAGTTCTCATTAGTGACATGTAGATTTGTTCTTGACAGGATGG  350

seq1  GGATCGTAGAGAAGTTCTAACAAGTACAAGTTGCTAGAGTGAATAAAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCGTAGAGAAGTTCTAACAAGTACAAGTTGCTAGAGTGAATAAAGTA  400

seq1  GGGTATCAGACCTGAACGGCTAGGCAGAATGCTGGCAGGAATGAGGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATCAGACCTGAACGGCTAGGCAGAATGCTGGCAGGAATGAGGCAAC  450

seq1  CAATATCCCACTTTTTCCCCCCTTCCTTATTGTTTCTGTGAAGAGAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATCCCACTTTTTCCCCCCTTCCTTATTGTTTCTGTGAAGAGAAGTA  500

seq1  ATGCCATATATTCCCTGATCGCCCACAGCCTGTTCTTGTTGCCACTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATATATTCCCTGATCGCCCACAGCCTGTTCTTGTTGCCACTGGAT  550

seq1  AAACCATTCTACTGGGCTTTGGTTCGAGGCTCATTGCTACAGCTGAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATTCTACTGGGCTTTGGTTCGAGGCTCATTGCTACAGCTGAACAT  600

seq1  ATTGCTGCACCCATGTCCTCTCCTACAAAAAGCATCATCTATTCCATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGCACCCATGTCCTCTCCTACAAAAAGCATCATCTATTCCATTTG  650

seq1  CTCTGTCAACTTTCTGCAGTCAGTTCTCCCTCAGAACCCCCCCCCCCCCC  700
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTCTGTCAACTTTCTGCAGTCAGTTCTCCCTCAGAA-CCCCCCCCCCCCC  699

seq1  GATCCTTTTACCTGTAGAAACAGTATCTGACTATTTTATCATCTGGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTTTTACCTGTAGAAACAGTATCTGACTATTTTATCATCTGGCTAT  749

seq1  TTCAATTAAATTACATTAAGAAAGCAAACAGTAAGGTTAAAAATGATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTAAATTACATTAAGAAAGCAAACAGTAAGGTTAAAAATGATCAC  799

seq1  TATATCAGTCCAACTTTCTACCATCCCCAG-AAGGTTAATTGAAAGGCGG  849
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  TATATCAGTCCAACTTTCTACCATCCCCAGAAAGGTTAATTGAAAAGCGG  849

seq1  CCATCTTGGCGACGTTTAGACAAATGAGGATAATTATGTGGTCTCCAGCT  899
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTGCCGACGTTTAGACAAATGAGGATAATTATGTGGTCTCCAGCT  899

seq1  CTTTGCGAGGTTAATTGCTTAGATGTATGAAGCCTTGAAGAACAAAGAAA  949
      ||||||||||||||||||||||||||||| ||||||||   |||||||||
seq2  CTTTGCGAGGTTAATTGCTTAGATGTATG-AGCCTTGA--GACAAAGAAA  946

seq1  GAATAAATCAGAAACAGGAATATGATCTGATCATATAATACTGTATATTC  999
      ||||||||||| |||||| ||||||||||||||||||||||||| || ||
seq2  GAATAAATCAG-AACAGG-ATATGATCTGATCATATAATACTGT-TA-TC  992

seq1  ACGTACAACTCAAACAAATAAACCCTTAATTAGAAGAACTTGCTCACTTG  1049
      |||||| ||||||   ||||||||||    ||||||||||||||||| ||
seq2  ACGTAC-ACTCAA--CAATAAACCCT---ATAGAAGAACTTGCTCAC-TG  1035

seq1  CATGGATGCATTGCCAGTTTAGTAGTATCAGACATC  1085
      ||| |||||| |||||| ||||||||||||||||||
seq2  CAT-GATGCA-TGCCAG-TTAGTAGTATCAGACATC  1068

seq1: chr9_28607482_28608626
seq2: B6Ng01-110J18.g_69_1206 (reverse)

seq1  TTGGAGACAATGAAAGAAGTCGGGTAACCCATCCCATGCCTGTTTCCTCA  50
      |||||||| ||| |||||||||||||  |||| |||   ||| |||||||
seq2  TTGGAGACCATG-AAGAAGTCGGGTA--CCATTCCAACGCTGGTTCCTCA  47

seq1  TGAACACAATGGAGCTTCCT-AGAGCTCTCCC-TTGAGTCAG-CAGTGAG  97
      | |||||||| |||||| || |||||| |||| ||||||||| |||||||
seq2  TAAACACAATAGAGCTTTCTAAGAGCTTTCCCTTTGAGTCAGCCAGTGAG  97

seq1  ATC-TCTGCATGTGGCGCCTCCTGAGGCTCTCTTCTCATTGAGATTCTGC  146
      ||| |||||||  ||||||| |||| ||| |||||||||||||| |||||
seq2  ATCTTCTGCATTGGGCGCCT-CTGA-GCTTTCTTCTCATTGAGA-TCTGC  144

seq1  AG-AGCAAAAGAAGGTAAAGACTTTAGACCTGGAGCCTGAAGCACTGGTG  195
      || |||||||||||  ||||||||||||||| ||||||| |||||| |||
seq2  AGAAGCAAAAGAAGTAAAAGACTTTAGACCT-GAGCCTG-AGCACT-GTG  191

seq1  TTTGCCACAGGCTTGGGACTGGCACTGAGAGTACCTCTCCGATTACTTGC  245
      ||||||||| ||||||||||||||||||||||| |||||||||||| |||
seq2  TTTGCCACA-GCTTGGGACTGGCACTGAGAGTA-CTCTCCGATTAC-TGC  238

seq1  CTTTCAATCCTCTAGATGAAATGTGAGGTACCTATGCTCACTGGGCAGCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAATCCTCTAGATGAAATGTGAGGTACCTATGCTCACTGGGCAGCT  288

seq1  ATTCAGCTTGAGAAGCAGATGAAAGAAATTAAGAAAACAACAAGGTCAAC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCTTGAGAAGCAGATGAAAGAAATTAAGAAAACAACAAGGTCAAC  338

seq1  AAGGTCACACCGTGACTAAGACTGGGTGGGAGCACAGATTGTTTTAATAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCACACCGTGACTAAGACTGGGTGGGAGCACAGATTGTTTTAATAG  388

seq1  GAGGTGGCTGTGACCCCCTTTAAAGGAAGGGGTGAAAAAGAGGAGAAAGC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGGCTGTGACCCCCTTTAAAGGAAGGGGTGAAAAAGAGGAGAAAGC  438

seq1  TAAAAGACACAGGTGGGAGACAGGAAGTACCCAGGATCCCTGATGTGAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGACACAGGTGGGAGACAGGAAGTACCCAGGATCCCTGATGTGAGA  488

seq1  GAGGCTTAGGTCAGCATAGGTCATGCATCTGGGTTATCACCTCATAATAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTAGGTCAGCATAGGTCATGCATCTGGGTTATCACCTCATAATAA  538

seq1  ACACTTGACAGAATTGGGGCTAAAGCCAAAGTGTTTCCTTCTCTGAAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTGACAGAATTGGGGCTAAAGCCAAAGTGTTTCCTTCTCTGAAAAA  588

seq1  CAAGGAGGGAGAACCTGGCGATCCCTGGGTCTATTTTTGACTCGAAAATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAGGGAGAACCTGGCGATCCCTGGGTCTATTTTTGACTCGAAAATA  638

seq1  CTGTGATGTAAATTAAAACTTGTGATCCTAATTTTGAGTGTGGCCAGAGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATGTAAATTAAAACTTGTGATCCTAATTTTGAGTGTGGCCAGAGC  688

seq1  TCTTGGGGGTAGGGGTAGGGGCACAGCCTGCCAGGCAGGGTTGAAAAGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGGGTAGGGGTAGGGGCACAGCCTGCCAGGCAGGGTTGAAAAGAA  738

seq1  CAAAGGAAGCCTCTCTGAGAGCAGCCATCTCCTGCCCTGGGAAGAGCAGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAAGCCTCTCTGAGAGCAGCCATCTCCTGCCCTGGGAAGAGCAGA  788

seq1  GGATGGGAAGAATGACTCTATTACCCTCTGCAGTTTCTCTGATCATGGTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGAAGAATGACTCTATTACCCTCTGCAGTTTCTCTGATCATGGTC  838

seq1  AGTTGCTTGAATTGTGCAAATTAAAATAGGAAATGTGCGTCTATAAATAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCTTGAATTGTGCAAATTAAAATAGGAAATGTGCGTCTATAAATAA  888

seq1  CCTCTGTAAGTGACACAGTGGAGACAACCATTACAAATGGACTCAGTGGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTAAGTGACACAGTGGAGACAACCATTACAAATGGACTCAGTGGA  938

seq1  GCGTGCATGGTTTGTGATGTCACCCCACCCCGAGCAAGTATTCATGTATC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCATGGTTTGTGATGTCACCCCACCCCGAGCAAGTATTCATGTATC  988

seq1  TGTAATTCATAATCATTTGTTCATGTTCGCTATCATTTCTCTCATCAAAT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTCATAATCATTTGTTCATGTTCGCTATCATTTCTCTCATCAAAT  1038

seq1  ACAACTAAAAAAGAAAACTGAACTCAAATAGATTGGGTCTTATCCTCTCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAAAAAAGAAAACTGAACTCAAATAGATTGGGTCTTATCCTCTCC  1088

seq1  AGCATAAAATAAAACCATATCTCACCAGGACATGTAGGAGGTCTGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAAATAAAACCATATCTCACCAGGACATGTAGGAGGTCTGAATTC  1138