BAC Information

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BAC

Clone NameB6Ng01-112C04
Chromosome9 (Build37)
Map Location 65,317,716 - 65,473,419
singlet/doubletdoublet
Overlap geneSpg21, Ankdd1a, Plekhq1, Pif1, LOC100041121
Upstream geneMegf11, Rab11a, AI115600, F730015K02Rik, Slc24a1, 2010321M09Rik, Ptplad1, Dpp8, Nope, Punc, Parp16, Cilp, Clpx, Pdcd7, Gm514, 5430433E21Rik, Rasl12, Ostb, Mtfmt
Downstream geneRbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112C04.bB6Ng01-112C04.g
ACCDH918284DH918285
length1,0681,045
definitionDH918284|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C04, 5' end.DH918285|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,317,716 - 65,318,794)(65,472,372 - 65,473,419)
sequence
gaattcacaggaagcacgtgtcttcagctctgtatagctgcaatggcttc
tgggacctgccatgttctgtcccccgctccctgtgagctgctattataat
ccatgttagtcaccgtctctgtgttgggaggggaattagtggctttgcgt
gttgtagggacagaacacctgccaggagcaatgtaaggagggaagagttc
atttggctcacagttcaagggacagaacatcatggcagagatgtcacggc
tgcaggggcttgaggcagttagaggcagagagagaatgtgggtgcgtggc
tccctttctcctttttatggccagtctgtgaccccagtccatggaatggt
gctacacacagttagggaaggtcttcccaccttagcctaatgtagttaac
cccttatgaccattcccagaggccggcctccagggtgagtctagaatctt
cagagttgacaggcagtgtttgggttccatatcagaggtcccagcagaca
agtccgagtcctctttctgctgtcagcccttttcttgggagaatagttgg
catcatcactgcttccaggccttttctctggcttcatcagatggtgtgaa
tctcttcggccaattctcctgtgtcctgggtgttcagtcacctttcacac
acagcactccaggagagtgagcaccccaggcctccacagctgtgggtgga
atctgatctgccctcaggaatctaccctctagaaagcaaatactgacggg
gcttcctgtctcggactggcaggtctcagaggccttagctctgtctgatt
ttctgcttcggtttgttgttaatttttcatctgttccctcctttggtttt
caagacagggtttctctgtgtagccctggcagtcctagaactcactctgt
agaccaggctggcctcaaactcagatctacctgcctctgctcctgagagc
taggatgaaagtcatgtgcctcaaacccagcttttttttttttttccttt
tcagacaagttctgtagtcttgattatctggatttggggaaaggctgact
caatcaactgagaccact
gaattctgacttcaacgtcaccacaagatgtcctgggtaataacagcatt
ggttcaggaccttaagattcagaagatgggtgtttctcaggcttattttc
ttggttgctagtgagatttaagttccagcctttcaggtgcaagaggtcag
ggtaggaggggctggggctggggggcctggggggtggggacataatgcca
ctctgtactgttaatatccccctgttgttcctacaatctctagttacata
ttaaaaaaaccgaggcttagaacaattgaaggagctcttctagcccttag
taaatatcattagatgtcagggaaaggaccagcgtttctttcttcagcac
ataaagagctccttggtaatcccaacaggaagagacagagacaggaggat
tcctggggcccactggccagcctcgctttatcagccagctcaagtcccag
ggagccgctcaaaaaacaagggcaggtgtttaaggaaatgttcatgcacg
ctttagtcccagcagaagcaggcagatcttagtgacttaaaggccagcct
ggtctacatagcaagctctaaatcagccaaggatatgtacatgcatggta
agacagtctcagaacaccagagaggtagtgagggttctgatttcggaatg
ttgagcaagtcactagttcagtatcaataaataagctatacaattgaagt
aataggggggctggtgagatggctcagtgggtaagaccacccaactgctc
ttccagaggtccagagttcaaatcccagcaaccacatggtggctcacaac
catctgtaacgagatctgactccgtcttctggagtgtctgaagacagcct
acagtgtacttacatataataaataaataaatcttttttaaaaattgaag
taatagtactcacttggtaagaataacaagtaatgctcgctgtatttttc
aggtcagttagactgggtcgtttttgtctagaatttctaagatggtcttt
tgttcgttgtttgtttgtttgtttgttttgtttgcttcttttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_65317716_65318794
seq2: B6Ng01-112C04.b_46_1113

seq1  GAATTCACAGGAAGCACGTGTCTTCAGCTCTGTATAGCTGCAATGGCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGAAGCACGTGTCTTCAGCTCTGTATAGCTGCAATGGCTTC  50

seq1  TGGGACCTGCCATGTTCTGTCCCCCGCTCCCTGTGAGCTGCTATTATAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCTGCCATGTTCTGTCCCCCGCTCCCTGTGAGCTGCTATTATAAT  100

seq1  CCATGTTAGTCACCGTCTCTGTGTTGGGAGGGGAATTAGTGGCTTTGCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTAGTCACCGTCTCTGTGTTGGGAGGGGAATTAGTGGCTTTGCGT  150

seq1  GTTGTAGGGACAGAACACCTGCCAGGAGCAATGTAAGGAGGGAAGAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGGGACAGAACACCTGCCAGGAGCAATGTAAGGAGGGAAGAGTTC  200

seq1  ATTTGGCTCACAGTTCAAGGGACAGAACATCATGGCAGAGATGTCACGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGCTCACAGTTCAAGGGACAGAACATCATGGCAGAGATGTCACGGC  250

seq1  TGCAGGGGCTTGAGGCAGTTAGAGGCAGAGAGAGAATGTGGGTGCGTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGGCTTGAGGCAGTTAGAGGCAGAGAGAGAATGTGGGTGCGTGGC  300

seq1  TCCCTTTCTCCTTTTTATGGCCAGTCTGTGACCCCAGTCCATGGAATGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTCCTTTTTATGGCCAGTCTGTGACCCCAGTCCATGGAATGGT  350

seq1  GCTACACACAGTTAGGGAAGGTCTTCCCACCTTAGCCTAATGTAGTTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACACAGTTAGGGAAGGTCTTCCCACCTTAGCCTAATGTAGTTAAC  400

seq1  CCCTTATGACCATTCCCAGAGGCCGGCCTCCAGGGTGAGTCTAGAATCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATGACCATTCCCAGAGGCCGGCCTCCAGGGTGAGTCTAGAATCTT  450

seq1  CAGAGTTGACAGGCAGTGTTTGGGTTCCATATCAGAGGTCCCAGCAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGACAGGCAGTGTTTGGGTTCCATATCAGAGGTCCCAGCAGACA  500

seq1  AGTCCGAGTCCTCTTTCTGCTGTCAGCCCTTTTCTTGGGAGAATAGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGAGTCCTCTTTCTGCTGTCAGCCCTTTTCTTGGGAGAATAGTTGG  550

seq1  CATCATCACTGCTTCCAGGCCTTTTCTCTGGCTTCATCAGATGGTGTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATCACTGCTTCCAGGCCTTTTCTCTGGCTTCATCAGATGGTGTGAA  600

seq1  TCTCTTCGGCCAATTCTCCTGTGTCCTGGGTGTTCAGTCACCTTTCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCGGCCAATTCTCCTGTGTCCTGGGTGTTCAGTCACCTTTCACAC  650

seq1  ACAGCACTCCAGGAGAGTGAGCACCCCAGGCCTCCACAGCTGTGGGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTCCAGGAGAGTGAGCACCCCAGGCCTCCACAGCTGTGGGTGGA  700

seq1  ATCTGATCTGCCCTCAGGAATCTACCCTCTAGAAAGCAAATACTGACGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATCTGCCCTCAGGAATCTACCCTCTAGAAAGCAAATACTGACGGG  750

seq1  GCTTCCTGTCTCGGACTGGCAGGTCTCAGAGGCCTTAGCTCTGTCTGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGTCTCGGACTGGCAGGTCTCAGAGGCCTTAGCTCTGTCTGATT  800

seq1  TTCTGCTTCGGTTTGTTGTTAATTTTTCCATCTGTTCCCTCCTTTGGTTT  850
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  TTCTGCTTCGGTTTGTTGTTAATTTTT-CATCTGTTCCCTCCTTTGG-TT  848

seq1  TTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCAGTCCTAGAACTCACTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACAGGGTTTCTCTGTGTAGCCCTGGCAGTCCTAGAACTCACTCT  898

seq1  GTAGACCAGGCTGGCCTCAAACTCAGATCTACCTGCCTCTGCCTCCTGAG  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GTAGACCAGGCTGGCCTCAAACTCAGATCTACCTGCCTCTG-CTCCTGAG  947

seq1  AGCTAGGATGAAAGGCATGTGCCTCCAAACCCAGCTTTTTTTTTTTTTTC  1000
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  AGCTAGGATGAAAGTCATGTGCCT-CAAACCCAGCTTTTTTTTTTTTTTC  996

seq1  CTTTTCAGACAAGTTCTGTAGCCCTGATTATCCTGGATCTTGGGGACAAG  1050
      ||||||||||||||||||||| | ||||||| |||||| ||||||| |||
seq2  CTTTTCAGACAAGTTCTGTAGTCTTGATTAT-CTGGAT-TTGGGGA-AAG  1043

seq1  GCTGACCTCAAACTCAACAGAGATCCACT  1079
      ||||| |||||  ||||| |||| |||||
seq2  GCTGA-CTCAA--TCAACTGAGA-CCACT  1068

seq1: chr9_65472372_65473419
seq2: B6Ng01-112C04.g_66_1110 (reverse)

seq1  AATAAAAGAAGCAAAACAAAACAAAACAAAACAAACAAACAAACAAACAA  50
      |||||||||||| ||||||||||||   |||||||||||| ||| |||||
seq2  AATAAAAGAAGC-AAACAAAACAAA--CAAACAAACAAAC-AACGAACAA  46

seq1  AAAGACATCTTAGAAATTCTGAGACAAAAACGACCCAGTCTAACTTGACC  100
      ||   ||||||||||||||| ||||||||||||||||||||||| |||||
seq2  AAGACCATCTTAGAAATTCT-AGACAAAAACGACCCAGTCTAAC-TGACC  94

seq1  TG-AAAATACAGCGAGCATTACTTGTTATTCTTA-CAAGTGAGTACTATT  148
      || ||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TGAAAAATACAGCGAGCATTACTTGTTATTCTTACCAAGTGAGTACTATT  144

seq1  ACTTCAATTTTTAAAAAAGATTTATTTATTTATTATATGTAAGTACACTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATTTTTAAAAAAGATTTATTTATTTATTATATGTAAGTACACTG  194

seq1  TA-GCTGTCTTCAGACACTCCAGAAGACGGAGTCAGATCTCGTTACAGAT  247
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGTCTTCAGACACTCCAGAAGACGGAGTCAGATCTCGTTACAGAT  244

seq1  GGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTCTGGA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTCTGGA  294

seq1  AGAGCAGTTGGGTGGTCTTACCCACTGAGCCATCTCACCAGCCCCCCTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTTGGGTGGTCTTACCCACTGAGCCATCTCACCAGCCCCCCTAT  344

seq1  TACTTCAATTGTATAGCTTATTTATTGATACTGAACTAGTGACTTGCTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCAATTGTATAGCTTATTTATTGATACTGAACTAGTGACTTGCTCA  394

seq1  ACATTCCGAAATCAGAACCCTCACTACCTCTCTGGTGTTCTGAGACTGTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCGAAATCAGAACCCTCACTACCTCTCTGGTGTTCTGAGACTGTC  444

seq1  TTACCATGCATGTACATATCCTTGGCTGATTTAGAGCTTGCTATGTAGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATGCATGTACATATCCTTGGCTGATTTAGAGCTTGCTATGTAGAC  494

seq1  CAGGCTGGCCTTTAAGTCACTAAGATCTGCCTGCTTCTGCTGGGACTAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTTTAAGTCACTAAGATCTGCCTGCTTCTGCTGGGACTAAA  544

seq1  GCGTGCATGAACATTTCCTTAAACACCTGCCCTTGTTTTTTGAGCGGCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCATGAACATTTCCTTAAACACCTGCCCTTGTTTTTTGAGCGGCTC  594

seq1  CCTGGGACTTGAGCTGGCTGATAAAGCGAGGCTGGCCAGTGGGCCCCAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGACTTGAGCTGGCTGATAAAGCGAGGCTGGCCAGTGGGCCCCAGG  644

seq1  AATCCTCCTGTCTCTGTCTCTTCCTGTTGGGATTACCAAGGAGCTCTTTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTCCTGTCTCTGTCTCTTCCTGTTGGGATTACCAAGGAGCTCTTTA  694

seq1  TGTGCTGAAGAAAGAAACGCTGGTCCTTTCCCTGACATCTAATGATATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAAGAAAGAAACGCTGGTCCTTTCCCTGACATCTAATGATATTT  744

seq1  ACTAAGGGCTAGAAGAGCTCCTTCAATTGTTCTAAGCCTCGGTTTTTTTA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGGCTAGAAGAGCTCCTTCAATTGTTCTAAGCCTCGGTTTTTTTA  794

seq1  ATATGTAACTAGAGATTGTAGGAACAACAGGGGGATATTAACAGTACAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAACTAGAGATTGTAGGAACAACAGGGGGATATTAACAGTACAGA  844

seq1  GTGGCATTATGTCCCCACCCCCCAGGCCCCCCAGCCCCAGCCCCTCCTAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATTATGTCCCCACCCCCCAGGCCCCCCAGCCCCAGCCCCTCCTAC  894

seq1  CCTGACCTCTTGCACCTGAAAGGCTGGAACTTAAATCTCACTAGCAACCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCTCTTGCACCTGAAAGGCTGGAACTTAAATCTCACTAGCAACCA  944

seq1  AGAAAATAAGCCTGAGAAACACCCATCTTCTGAATCTTAAGGTCCTGAAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAAGCCTGAGAAACACCCATCTTCTGAATCTTAAGGTCCTGAAC  994

seq1  CAATGCTGTTATTACCCAGGACATCTTGTGGTGACGTTGAAGTCAGAATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTGTTATTACCCAGGACATCTTGTGGTGACGTTGAAGTCAGAATT  1044

seq1  C  1048
      |
seq2  C  1045