BAC Information

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BAC

Clone NameB6Ng01-113A12
Chromosome9 (Build37)
Map Location 119,923,768 - 120,035,393
singlet/doubletdoublet
Overlap geneCmya1, Cx3cr1, Ccr8, Slc25a38
Upstream geneCtdspl, Vill, Plcd1, Dlec1, Acaa1b, EG546165, Slc22a14, Slc22a13, 9330176C04Rik, Oxsr1, Myd88, Acaa1a, Xylb, Acvr2b, Endogl1, Scn5a, Scn10a, Scn11a, LOC100039837, Wdr48, Gorasp1, Ttc21a, Axud1
Downstream geneRpsa, Snora62, EG546166, Mobp, LOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1, Ulk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113A12.bB6Ng01-113A12.g
ACCDH918930DH918931
length1,0691,113
definitionDH918930|Mus musculus domesticus DNA, BAC clone: B6Ng01-113A12, 5' end.DH918931|Mus musculus domesticus DNA, BAC clone: B6Ng01-113A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,923,768 - 119,924,839)(120,034,274 - 120,035,393)
sequence
gaattccagaacattctttggctgccctgtgagcacagcgccctcgatgc
acatctcctttgtcccagcctgatcctggatatctctctggtagagcagg
gcttgacctatgtcctgacctaggtgtgtatttttccctgagatataatg
gcttccctgagggctagaagcttccggaagcttctttgtagctgattgga
ctgagatgaaagttggagaggaggatcctgtgcagggaggagagacttgt
aggaggccaggctcggctcctctcagtgtctccagcctcctggagggcag
gacgttcactgctgcctggcctctggcctctgcgtgatttctcatcttgt
cctcaggatggctctcggccttttcttgggttttgacgaggggtggatct
ctgacctggctggagcttgtctgtatggctctgctactgactgagacctt
gttcacactgggatcttttgtagttccctgtggatggctgcttgtgggag
cctcagactggaggctagacatggagctaagagccttgtgcactgcttct
tcgatgtccagcagcctggctagggtctgttctttcagctgggcaacctc
tgtactcacccgagtcagttccccaaaggcctgctccatggaggcctcag
tcatgtggggggcagtgggagcctgagggactccccctcccagctggggt
acgccctcgaagagcttccgcagggcctgcacatccacgctgcgagatgc
ttcctttctccagggtttgcacttggctcagaggccctggagctcctgat
ggctgccctgtggactctcagggtcccctgcttttggggggagctattgt
gcttttgtggtgggctggagtcattgttgagaacgttcaacttaagagac
tcggggctctggctgttgctgctggtatctgacccctgctaggcctggaa
accattgagctgagttgacgctgatgagcaagttgcctctgggccttgga
actttcaccagaggcaggcagtccctggcctgctattgggggaactttgt
ctgaccctggtgtgctata
gaattccaggacacccaggactacacatagaaaccctgtctcgaaaaaaa
accaaaacaacaaaaaaaagctaactgccttcaggaataagagcatgcta
tttcaaagggaactaaggcccaatgaagttacttgcaagtaaaaactggt
taaatgacagaatgttcacattttaaaagttattggagaaataaaagcat
ttattatttaattagaaaaaaatgacaatagaaagtgagtggtaggtctg
ggaatgaagattataagtaggtataagagcttactggaggtcgggggtgg
aaatgttctaaaactagtttatagggtcatggctgcacttttaaacaggg
tctcacaagtggaggatgactgagcttccagctcttctgcctctgactcc
cagtgagggaatgccaagcctgaggaccggtgttcctgtttgctctattg
ctaatgcaaatgaacccaccagaaccttgcatgaattagcatgacactca
gccgaacatccagccccaaaccaccaagcagtgggcttcaagcaagtagg
aagcctctttgaattcataatctcaaggcacttttgtttttccttcagtt
tttgagacatggttttctctgtgtagccctagctgtcctagaacttgctc
tgtctaacaggctagccttgaactcagagatcttcctacctctgcctgct
gggtgctgggattaaaggcgtgtgccaccatgctcagtttccaaagctgt
ttttaaaagttaagttttcccaaaaaaaaaaaaaggacttacttggcagg
tgaaaacttaagtcaccttagagctgctttgctagtctcagggagtaaga
catactagtaaggcttaccaacagactttttatatgtataaataatccag
ggcttgatcgggtagccctccctggctgacctgtaactcttgagtctact
tgcctatctctcaagttgctgggattaatgatctgttccttattattttt
tttttttccaatttttattaggtatttaactcatttaatttccaatgcta
tatcaaaaggtcccccattcacccgcacccactctccgtgccatccactt
cccccttttggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_119923768_119924839
seq2: B6Ng01-113A12.b_47_1115

seq1  GAATTCCAGAACATTCTTTGGCTGCCCTGTGAGCACAGCGCCCTCGATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACATTCTTTGGCTGCCCTGTGAGCACAGCGCCCTCGATGC  50

seq1  ACATCTCCTTTGTCCCAGCCTGATCCTGGATATCTCTCTGGTAGAGCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCCTTTGTCCCAGCCTGATCCTGGATATCTCTCTGGTAGAGCAGG  100

seq1  GCTTGACCTATGTCCTGACCTAGGTGTGTATTTTTCCCTGAGATATAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGACCTATGTCCTGACCTAGGTGTGTATTTTTCCCTGAGATATAATG  150

seq1  GCTTCCCTGAGGGCTAGAAGCTTCCGGAAGCTTCTTTGTAGCTGATTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCTGAGGGCTAGAAGCTTCCGGAAGCTTCTTTGTAGCTGATTGGA  200

seq1  CTGAGATGAAAGTTGGAGAGGAGGATCCTGTGCAGGGAGGAGAGACTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGATGAAAGTTGGAGAGGAGGATCCTGTGCAGGGAGGAGAGACTTGT  250

seq1  AGGAGGCCAGGCTCGGCTCCTCTCAGTGTCTCCAGCCTCCTGGAGGGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCCAGGCTCGGCTCCTCTCAGTGTCTCCAGCCTCCTGGAGGGCAG  300

seq1  GACGTTCACTGCTGCCTGGCCTCTGGCCTCTGCGTGATTTCTCATCTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTTCACTGCTGCCTGGCCTCTGGCCTCTGCGTGATTTCTCATCTTGT  350

seq1  CCTCAGGATGGCTCTCGGCCTTTTCTTGGGTTTTGACGAGGGGTGGATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGATGGCTCTCGGCCTTTTCTTGGGTTTTGACGAGGGGTGGATCT  400

seq1  CTGACCTGGCTGGAGCTTGTCTGTATGGCTCTGCTACTGACTGAGACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTGGCTGGAGCTTGTCTGTATGGCTCTGCTACTGACTGAGACCTT  450

seq1  GTTCACACTGGGATCTTTTGTAGTTCCCTGTGGATGGCTGCTTGTGGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACACTGGGATCTTTTGTAGTTCCCTGTGGATGGCTGCTTGTGGGAG  500

seq1  CCTCAGACTGGAGGCTAGACATGGAGCTAAGAGCCTTGTGCACTGCTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGACTGGAGGCTAGACATGGAGCTAAGAGCCTTGTGCACTGCTTCT  550

seq1  TCGATGTCCAGCAGCCTGGCTAGGGTCTGTTCTTTCAGCTGGGCAACCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGTCCAGCAGCCTGGCTAGGGTCTGTTCTTTCAGCTGGGCAACCTC  600

seq1  TGTACTCACCCGAGTCAGTTCCCCAAAGGCCTGCTCCATGGAGGCCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTCACCCGAGTCAGTTCCCCAAAGGCCTGCTCCATGGAGGCCTCAG  650

seq1  TCATGTGGGGGGCAGTGGGAGCCTGAGGGACTCCCCCTCCCAGCTGGGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGGGGGCAGTGGGAGCCTGAGGGACTCCCCCTCCCAGCTGGGGT  700

seq1  ACGCCCTCGAAGAGCTTCCGCAGGGCCTGCACATCCACGCTGCGAGATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCTCGAAGAGCTTCCGCAGGGCCTGCACATCCACGCTGCGAGATGC  750

seq1  TTCC-TTCTCCAGGGTTTGCACTTGGCTCAGGAGGCCCTGGAGCTCCTGA  799
      |||| ||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCCTTTCTCCAGGGTTTGCACTTGGCTCA-GAGGCCCTGGAGCTCCTGA  799

seq1  TGGCTGCCCTGTGGACTCTCAGGGGTCCCCTGCTTTTGGGGGGAGCTATT  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGGCTGCCCTGTGGACTCTCA-GGGTCCCCTGCTTTTGGGGGGAGCTATT  848

seq1  GTGCTTTTGTGGTGGGCTGGAGTCATTGTTGAGAACGTTCAACTTAGGAG  899
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTGCTTTTGTGGTGGGCTGGAGTCATTGTTGAGAACGTTCAACTTAAGAG  898

seq1  ACTCGGGGCTCTGGCTGTTGCTGCTGGTTATCTGACCCCTGCTAGGCCTG  949
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACTCGGGGCTCTGGCTGTTGCTGCTGG-TATCTGACCCCTGCTAGGCCTG  947

seq1  GAAGCCATAGAGCTGAGTGGACGCTGATGAGCAGGTTGCTTCTGGCCCTT  999
      ||| |||| ||||||||| |||||||||||||| ||||| ||||| ||||
seq2  GAAACCATTGAGCTGAGTTGACGCTGATGAGCAAGTTGCCTCTGGGCCTT  997

seq1  GGAGCTTTCAGCCAGAGGCAGGCAGT-CCTGGCCTGCTATTGTGGGAGCT  1048
      ||| |||||| ||||||||||||||| ||||||||||||||| |||| ||
seq2  GGAACTTTCA-CCAGAGGCAGGCAGTCCCTGGCCTGCTATTGGGGGAACT  1046

seq1  TTGTCTGACCCTGGGTTGGCTATA  1072
      |||||||||||| |||  ||||||
seq2  TTGTCTGACCCT-GGTGTGCTATA  1069

seq1: chr9_120034274_120035393
seq2: B6Ng01-113A12.g_70_1182 (reverse)

seq1  GGCCAAAAAGGGGGAGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGATATG  50
      |||||||| |||| ||||| |||   || ||||||| | |||||   |||
seq2  GGCCAAAAGGGGGAAGTGGATGGCACGGAGAGTGGGTGCGGGTG--AATG  48

seq1  GGGGA-CTTTTGGTATAGCATTGGAAATGTAAATGAGTTAAATACCTAAT  99
      ||||| |||||| ||||||||||||||| |||||||||||||||||||||
seq2  GGGGACCTTTTGATATAGCATTGGAAAT-TAAATGAGTTAAATACCTAAT  97

seq1  AAAAAATGGAAAAAAAAAAAATAAATAGGAACAGACCATTAATCCCAGC-  148
      ||||| ||||||||||||||||||  ||||||||| ||||||||||||| 
seq2  AAAAATTGGAAAAAAAAAAAATAATAAGGAACAGATCATTAATCCCAGCA  147

seq1  ACTTGAGAGATAGGCAGGTAGGACTCAAGAGTTACAGGTCAGCCAGGGAG  198
      |||||||||||||||| ||| |||||||||||||||||||||||||||||
seq2  ACTTGAGAGATAGGCAAGTA-GACTCAAGAGTTACAGGTCAGCCAGGGAG  196

seq1  GGCTACCCGATCAAGCCCTGGATTTATTTATACATATAAAAAAGTTCTGG  248
      |||||||||||||||||||||| |||||||||||||||||||   ||| |
seq2  GGCTACCCGATCAAGCCCTGGA-TTATTTATACATATAAAAA--GTCT-G  242

seq1  TTGGTAAGCCTTACTAGTATGTCTTACTCCCTGAGACTAGCAAAGCAGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAAGCCTTACTAGTATGTCTTACTCCCTGAGACTAGCAAAGCAGCT  292

seq1  CTAAGGTGACTTAAGTTTTCACCTGCCAAGTAAGTCCTTTTTTTTTTTTT  348
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTAAGGTGACTTAAGTTTTCACCTGCCAAGTAAGTCC-TTTTTTTTTTTT  341

seq1  TGGGAAAACTTAACTTTTAAAAACAGCTTTGGAAACTGAGCATGGTGGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAACTTAACTTTTAAAAACAGCTTTGGAAACTGAGCATGGTGGCA  391

seq1  CACGCCTTTAATCCCAGCACCCAGCAGGCAGAGGTAGGAAGATCTCTGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTTTAATCCCAGCACCCAGCAGGCAGAGGTAGGAAGATCTCTGAG  441

seq1  TTCAAGGCTAGCCTGTTAGACAGAGCAAGTTCTAGGACAGCTAGGGCTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGCTAGCCTGTTAGACAGAGCAAGTTCTAGGACAGCTAGGGCTAC  491

seq1  ACAGAGAAAACCATGTCTCAAAAACTGAAGGAAAAACAAAAGTGCCTTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAAACCATGTCTCAAAAACTGAAGGAAAAACAAAAGTGCCTTGA  541

seq1  GATTATGAATTCAAAGAGGCTTCCTACTTGCTTGAAGCCCACTGCTTGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGAATTCAAAGAGGCTTCCTACTTGCTTGAAGCCCACTGCTTGGT  591

seq1  GGTTTGGGGCTGGATGTTCGGCTGAGTGTCATGCTAATTCATGCAAGGTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGGGCTGGATGTTCGGCTGAGTGTCATGCTAATTCATGCAAGGTT  641

seq1  CTGGTGGGTTCATTTGCATTAGCAATAGAGCAAACAGGAACACCGGTCCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGGTTCATTTGCATTAGCAATAGAGCAAACAGGAACACCGGTCCT  691

seq1  CAGGCTTGGCATTCCCTCACTGGGAGTCAGAGGCAGAAGAGCTGGAAGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGGCATTCCCTCACTGGGAGTCAGAGGCAGAAGAGCTGGAAGCT  741

seq1  CAGTCATCCTCCACTTGTGAGACCCTGTTTAAAAGTGCAGCCATGACCCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCATCCTCCACTTGTGAGACCCTGTTTAAAAGTGCAGCCATGACCCT  791

seq1  ATAAACTAGTTTTAGAACATTTCCACCCCCGACCTCCAGTAAGCTCTTAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTAGTTTTAGAACATTTCCACCCCCGACCTCCAGTAAGCTCTTAT  841

seq1  ACCTACTTATAATCTTCATTCCCAGACCTACCACTCACTTTCTATTGTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTTATAATCTTCATTCCCAGACCTACCACTCACTTTCTATTGTCA  891

seq1  TTTTTTTCTAATTAAATAATAAATGCTTTTATTTCTCCAATAACTTTTAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTAATTAAATAATAAATGCTTTTATTTCTCCAATAACTTTTAA  941

seq1  AATGTGAACATTCTGTCATTTAACCAGTTTTTACTTGCAAGTAACTTCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGAACATTCTGTCATTTAACCAGTTTTTACTTGCAAGTAACTTCAT  991

seq1  TGGGCCTTAGTTCCCTTTGAAATAGCATGCTCTTATTCCTGAAGGCAGTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTTAGTTCCCTTTGAAATAGCATGCTCTTATTCCTGAAGGCAGTT  1041

seq1  AGCTTTTTTTTGTTGTTTTGGTTTTTTTTCGAGACAGGGTTTCTATGTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTTTTTGTTGTTTTGGTTTTTTTTCGAGACAGGGTTTCTATGTGT  1091

seq1  AGTCCTGGGTGTCCTGGAATTC  1120
      ||||||||||||||||||||||
seq2  AGTCCTGGGTGTCCTGGAATTC  1113