BAC Information

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BAC

Clone NameB6Ng01-114J16
Chromosome9 (Build37)
Map Location 92,437,994 - 92,439,154
singlet/doubletsinglet
Overlap genePlod2
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4
Downstream geneLOC100039921, LOC100039931, LOC100039944, LOC667009, LOC100040114, LOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114J16.bB6Ng01-114J16.g
ACCDH920085DH920086
length1,152372
definitionDH920085|Mus musculus domesticus DNA, BAC clone: B6Ng01-114J16, 5' end.DH920086|Mus musculus domesticus DNA, BAC clone: B6Ng01-114J16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaattcagagggtaacacttggcacaagtccagttggaccctgt
aaccatcggtttttgtctttctcatggcgcaataggtgaaacttaaggac
tcagaagcacctggttctgtggaacagtgctcgctttgttggctgcagtc
acagggaaatctgaacctgtatgagtattctgattttgaagtaactttta
tctcatatcaaaggtatttctttcagcatagtactagaaaaatcacacag
ataaatgagaatagagacagaatataagactttactctgaaaacggtctt
tgttaaaacaccaaaagcttttattgataagtaaaaataaccgccaggat
ttgctaattttagagtttggcttcagcttctgtctattttatgccacctc
gatgcgacttctcacttgtttacagagtatatccatgccaggctgctacc
tttaaatttgaggttaaaaacaaacaaacaaacaaaacaaaacaaaacaa
aaaacccaaacaaacaaaaaaaacaacaaaaacttccctgtgcaagcttt
tacatttcatggaattggatgttaaattttaagggattgtaatatctaag
gcaggggatttgagatacgaatgtttttcatataaagcctatggttaata
tctgagacatggtttctgtggtggtaggtgggcccagagttcagttatga
gctaaatgttggaaatgtttctgcattaatggagccaagtgaggagtagc
cattctggttacacacacagatagatggtttcacatgttctgtggtaagc
taatagatgcaaaagatgcattgtttggtatttggtcagatttattatca
gctgtggtaagttttatccctgaagtagtataactggaaattactacatg
gatattactacataataatctttcaggtctagttgtctagatgagtgggg
ctttcaaggagtgcagatcacctgtgacaccccccccccccccattattt
tgtcaatgtgttccagctgggccagtaaaaagattttcagagctggggaa
atgctcagttagtaaagtacttggtacctaagtgtgagaccttggttctg
aattcccggtctactttatagctaggcctgtgcctgtgctttaacccatt
ga

tgctgtagatagggcagagaactgtaggagtcacagggttcaaggaaatc
acaaggaaacctatagaaccaataaacctggccctataggggctcacaga
gactgagccacaaatcaggcaccctttatgagacatgttacagttgtata
gattagtcttcttgtggaactcccaatagtgggagcagagactctttagc
tggcttttgtgatacttttcctcatactgggttgccttggccagctttaa
tagcagagaaagtgcctagtgttactataacttgatatgccatgtttgct
tgatactcatgagaggactactattttctgaatagaaacagaggtggagt
ggatgggacggggaagaaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92437994_92439154
seq2: B6Ng01-114J16.b_44_1195

seq1  GAATTCCAATTCAGAGGGTAACACTTGGCACAAGTCCAGTTGGACCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTCAGAGGGTAACACTTGGCACAAGTCCAGTTGGACCCTGT  50

seq1  AACCATCGGTTTTTGTCTTTCTCATGGCGCAATAGGTGAAACTTAAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCGGTTTTTGTCTTTCTCATGGCGCAATAGGTGAAACTTAAGGAC  100

seq1  TCAGAAGCACCTGGTTCTGTGGAACAGTGCTCGCTTTGTTGGCTGCAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCACCTGGTTCTGTGGAACAGTGCTCGCTTTGTTGGCTGCAGTC  150

seq1  ACAGGGAAATCTGAACCTGTATGAGTATTCTGATTTTGAAGTAACTTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGAAATCTGAACCTGTATGAGTATTCTGATTTTGAAGTAACTTTTA  200

seq1  TCTCATATCAAAGGTATTTCTTTCAGCATAGTACTAGAAAAATCACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATATCAAAGGTATTTCTTTCAGCATAGTACTAGAAAAATCACACAG  250

seq1  ATAAATGAGAATAGAGACAGAATATAAGACTTTACTCTGAAAACGGTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGAGAATAGAGACAGAATATAAGACTTTACTCTGAAAACGGTCTT  300

seq1  TGTTAAAACACCAAAAGCTTTTATTGATAAGTAAAAATAACCGCCAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAACACCAAAAGCTTTTATTGATAAGTAAAAATAACCGCCAGGAT  350

seq1  TTGCTAATTTTAGAGTTTGGCTTCAGCTTCTGTCTATTTTATGCCACCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAATTTTAGAGTTTGGCTTCAGCTTCTGTCTATTTTATGCCACCTC  400

seq1  GATGCGACTTCTCACTTGTTTACAGAGTATATCCATGCCAGGCTGCTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCGACTTCTCACTTGTTTACAGAGTATATCCATGCCAGGCTGCTACC  450

seq1  TTTAAATTTGAGGTTAAAAACAAACAAACAAACAAAACAAAACAAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTGAGGTTAAAAACAAACAAACAAACAAAACAAAACAAAACAA  500

seq1  AAAACCCAAACAAACAAAAAAAACAACAAAAACTTCCCTGTGCAAGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAAACAAACAAAAAAAACAACAAAAACTTCCCTGTGCAAGCTTT  550

seq1  TACATTTCATGGAATTGGATGTTAAATTTTAAGGGATTGTAATATCTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCATGGAATTGGATGTTAAATTTTAAGGGATTGTAATATCTAAG  600

seq1  GCAGGGGATTTGAGATACGAATGTTTTTCATATAAAGCCTATGGTTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGGATTTGAGATACGAATGTTTTTCATATAAAGCCTATGGTTAATA  650

seq1  TCTGAGACATGGTTTCTGTGGTGGTAGGTGGGCCCAGAGTTCAGTTATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGACATGGTTTCTGTGGTGGTAGGTGGGCCCAGAGTTCAGTTATGA  700

seq1  GCTAAATGTTGGAAATGTTTCTGCATTAATGGAGCCAAGTGAGGAGTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATGTTGGAAATGTTTCTGCATTAATGGAGCCAAGTGAGGAGTAGC  750

seq1  CATTCTGGTTACACACACAGATAGATGGTTTCACATGTTCTGTGGTAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGGTTACACACACAGATAGATGGTTTCACATGTTCTGTGGTAAGC  800

seq1  TAATAGATGCAAAAGATGCATTGTTTGGTTATTTGGTCAGATTTATTATC  850
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAATAGATGCAAAAGATGCATTGTTTGG-TATTTGGTCAGATTTATTATC  849

seq1  AGCTGTGGTAAGTTTTATCCCTGAAGTAGTATAACTGGAAATTACTACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGTAAGTTTTATCCCTGAAGTAGTATAACTGGAAATTACTACAT  899

seq1  GGATATTACTACATAAATAATCTTTCAGGTCTAAGTTGTCTAGATGAGT-  949
      |||||||||||||| ||||||||||||||||| |||||||||||||||| 
seq2  GGATATTACTACAT-AATAATCTTTCAGGTCT-AGTTGTCTAGATGAGTG  947

seq1  GGGCTTTCAA-GAGTGCAGATCACCTGTGACAACCCCCCCCCCCCCCATT  998
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  GGGCTTTCAAGGAGTGCAGATCACCTGTGAC-ACCCCCCCCCCCCCCATT  996

seq1  A-TTTGTCAATGTGTTCCAGCT-GGTCAGTAAAAAGAATATTCAGAGCTG  1046
      | |||||||||||||||||||| || |||||||||| || ||||||||||
seq2  ATTTTGTCAATGTGTTCCAGCTGGGCCAGTAAAAAG-ATTTTCAGAGCTG  1045

seq1  GGGAGATGGCTCAGTTAGTAAAGTACTT-GTACCAAAAGTGTGAGGACCT  1095
      |||| || |||||||||||||||||||| |||||  |||||||| |||||
seq2  GGGAAAT-GCTCAGTTAGTAAAGTACTTGGTACC-TAAGTGTGA-GACCT  1092

seq1  GAGTTCTGGATCCCCAGGGTCTACTTAATAGCTAGGCCTGGTGGCCTGTG  1145
        |||||| || |||  ||||||||| |||||||||||||   |||||||
seq2  TGGTTCTGAATTCCC--GGTCTACTTTATAGCTAGGCCTG--TGCCTGTG  1138

seq1  CTTATAACCCCATTGA  1161
      ||| ||| ||||||||
seq2  CTT-TAA-CCCATTGA  1152


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