BAC Information

Click to search

BAC

Clone NameB6Ng01-115D17
Chromosome9 (Build37)
Map Location 121,609,177 - 121,754,133
singlet/doubletdoublet
Overlap geneSec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13
Upstream geneLOC100040010, Ctnnb1, Ulk4, Trak1, Cck, Lyzl4, Vipr1, LOC100040063
Downstream geneHigd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115D17.bB6Ng01-115D17.g
ACCDH920550DH920551
length1,038985
definitionDH920550|Mus musculus domesticus DNA, BAC clone: B6Ng01-115D17, 5' end.DH920551|Mus musculus domesticus DNA, BAC clone: B6Ng01-115D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,609,177 - 121,610,213)(121,753,431 - 121,754,133)
sequence
gaattcctctacataatgttctcaagaccagcctaagctatgcagtaaga
ccctgtcacaaaaataaagagctaggatgcgggtcagaattagatgcaca
aggccttggattcaatccttagtaccacagataaataagtaaaatgtgaa
gagctcatggtagctctctctgtcatatctctgcaatgtctctgtaacat
ctttcctgtgactgtatttcagaaactgaaaggagaaaagaagaaattag
catcaggtctccgtggtgggcttctttctacaagagtcgtacgtaaatgt
gatcatcgacgtgacggccctctccgctcacaactgtggtgctgatgact
gtgagccgagagagatttttatccccggctgctcctcacctagacggcgt
ttttaattggaagatactatgacaagatccagggttcattacacagagct
acctcagagactgctagcattcaatttaaaacaggagtgcaaacctgggt
cagatgatgcctgccatcctggcaccgaggcggaggtgggactacaagtt
caaggctggtctggaacaaagccctgacacatcacacagagtaaaggtgc
ttgctgtctgcctggccacctggagcacacaaaatttaaagtaaatattt
tagccgggtagtggtgatggatggaacagagcgggttccaggacaccaag
gactacacagagaaacactgtctcagaaaaacaaaacaaaacaaaacaaa
acaacaaccaccaccagcagcaacaacaacaacgaaccctgctgagcaga
ctgaggagaaagtggaagtcatcttatttctgttcaccgaaactagaaat
gtacttctgcagtgtctccgccataattctgaacgatacattgaagattc
tacacaacaactggagagagagaggtttctgtggcactgctctgtgtcag
cagaagcaccgaaagtgaccaaacgtccacgttcaccttttaatatggcg
cggactctttgtttggggcactgtttggggtggctttt
gaattctcaggttcaattcaaagcacccatatggcccctcacagctgtcc
tgtaattccaggtccaaggcatctagtggcctcttctggtcttgggcacc
aagtacacacatggtgaacagacacacatgctgggaaatattattcacat
aaaataatttttacaaaagaaaatggaagtctggcttggctcatgtcaga
gtcactttcctgttcaatttcgtttctcatggagtagaacgacttaatgt
tcatcatttgtaggaggaatataatttcagtgaggggagtctacctgacg
accctgttcaagaagataaatatgcatgggctgggacgatggctcagcgt
taccttgcaaacctgacaacctcaattaggcaagaactcatatataaaac
gacaagtataaccaggcagtggtgtaacatgccattaaccccagcacgga
tctctgaatttgagggcagcctggtctacagagcaagttccaggacagcc
agggctacacagagaagccctgtctcaaaaaagtaaataaataaaaaata
aaaataaaaaggctagtatagagttacttacacttgtgattccagtgcca
gagaaacaagcaggcagccaggctagccaaattagtgatcctggggccag
agaaaggccctgtgttcaagagcactttctgttggtatggaaaagtactc
taacaaaagccaattaggaggaaaagttgattttagagcacagttccatc
acctcagggaagtgaaacagccagctacgtcaccgtcaggagcagaaaga
agtgaatgcattcttctctactacccagcttactcgacccttacacaatt
cacagcccaaccagggtgccacccttaaacagttaaagaagacagtagcc
ctccggctggcctggtcagacaatctcacaaaactctcccaggtcagtct
caagtgtgtcagctgacaaatgtgaccatatccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_121609177_121610213
seq2: B6Ng01-115D17.b_48_1085

seq1  GAATTCCTCTACATAATGTTCTCAAGACCAGCCTAAGCTATGCAGTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTACATAATGTTCTCAAGACCAGCCTAAGCTATGCAGTAAGA  50

seq1  CCCTGTCACAAAAATAAAGAGCTAGGATGCGGGTCAGAATTAGATGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCACAAAAATAAAGAGCTAGGATGCGGGTCAGAATTAGATGCACA  100

seq1  AGGCCTTGGATTCAATCCTTAGTACCACAGATAAATAAGTAAAATGTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTGGATTCAATCCTTAGTACCACAGATAAATAAGTAAAATGTGAA  150

seq1  GAGCTCATGGTAGCTCTCTCTGTCATATCTCTGCAATGTCTCTGTAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCATGGTAGCTCTCTCTGTCATATCTCTGCAATGTCTCTGTAACAT  200

seq1  CTTTCCTGTGACTGTATTTCAGAAACTGAAAGGAGAAAAGAAGAAATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGTGACTGTATTTCAGAAACTGAAAGGAGAAAAGAAGAAATTAG  250

seq1  CATCAGGTCTCCGTGGTGGGCTTCTTTCTACAAGAGTCGTACGTAAATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGTCTCCGTGGTGGGCTTCTTTCTACAAGAGTCGTACGTAAATGT  300

seq1  GATCATCGACGTGACGGCCCTCTCCGCTCACAACTGTGGTGCTGATGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCATCGACGTGACGGCCCTCTCCGCTCACAACTGTGGTGCTGATGACT  350

seq1  GTGAGCCGAGAGAGATTTTTATCCCCGGCTGCTCCTCACCTAGACGGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCGAGAGAGATTTTTATCCCCGGCTGCTCCTCACCTAGACGGCGT  400

seq1  TTTTAATTGGAAGATACTATGACAAGATCCAGGGTTCATTACACAGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTGGAAGATACTATGACAAGATCCAGGGTTCATTACACAGAGCT  450

seq1  ACCTCAGAGACTGCTAGCATTCAATTTAAAACAGGAGTGCAAACCTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGAGACTGCTAGCATTCAATTTAAAACAGGAGTGCAAACCTGGGT  500

seq1  CAGATGATGCCTGCCATCCTGGCACCGAGGCGGAGGTGGGACTACAAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGATGCCTGCCATCCTGGCACCGAGGCGGAGGTGGGACTACAAGTT  550

seq1  CAAGGCTGGTCTGGAACAAAGCCCTGACACATCACACAGAGTAAAGGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGGTCTGGAACAAAGCCCTGACACATCACACAGAGTAAAGGTGC  600

seq1  TTGCTGTCTGCCTGGCCACCTGGAGCACACAAAATTTAAAGTAAATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTCTGCCTGGCCACCTGGAGCACACAAAATTTAAAGTAAATATTT  650

seq1  TAGCCGGGTAGTGGTGATGGATGGAACAGAGCGGGTTCCAGGACACCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCGGGTAGTGGTGATGGATGGAACAGAGCGGGTTCCAGGACACCAAG  700

seq1  GACTACACAGAGAAACACTGTCTCAGAAAAACAAAACAAAACAAAACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACACAGAGAAACACTGTCTCAGAAAAACAAAACAAAACAAAACAAA  750

seq1  ACAACAACCACCACCAGCAGCAACAACAACAACGAACCCTGCTGAGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACCACCACCAGCAGCAACAACAACAACGAACCCTGCTGAGCAGA  800

seq1  CTGAGGAGAAAGTGGAAGTCATCTTATTTCTGTTCACCGAAACTAGAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAGAAAGTGGAAGTCATCTTATTTCTGTTCACCGAAACTAGAAAT  850

seq1  GTACTTCTGCAGTGTCTCCGCCATAATTCTGAACGATACATTGAAGATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTCTGCAGTGTCTCCGCCATAATTCTGAACGATACATTGAAGATTC  900

seq1  TACACAACAACTGGAGAGAGAGAGGTTTCTGTGGCACTGCTCTGTGTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAACAACTGGAGAGAGAGAGGTTTCTGTGGCACTGCTCTGTGTCAG  950

seq1  CAGAAGCACGGAAGGTGACCAAACGTCCACGTTCACCTTTT-ATATGGCG  999
      ||||||||| ||| ||||||||||||||||||||||||||| ||||||||
seq2  CAGAAGCACCGAAAGTGACCAAACGTCCACGTTCACCTTTTAATATGGCG  1000

seq1  C-GACTCTTTGTTTGGGGCACTGTTTTGGGGTGGCTTTT  1037
      | ||||||||||||||||||||| |||||||||||||||
seq2  CGGACTCTTTGTTTGGGGCACTG-TTTGGGGTGGCTTTT  1038

seq1: chr9_121753431_121754133
seq2: B6Ng01-115D17.g_70_772 (reverse)

seq1  TTAGAGTACTTTTCCATACCAACAGAAAGTGCTCTTGAACACAGGGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTACTTTTCCATACCAACAGAAAGTGCTCTTGAACACAGGGCCTT  50

seq1  TCTCTGGCCCCAGGATCACTAATTTGGCTAGCCTGGCTGCCTGCTTGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGGCCCCAGGATCACTAATTTGGCTAGCCTGGCTGCCTGCTTGTTT  100

seq1  CTCTGGCACTGGAATCACAAGTGTAAGTAACTCTATACTAGCCTTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCACTGGAATCACAAGTGTAAGTAACTCTATACTAGCCTTTTTAT  150

seq1  TTTTATTTTTTATTTATTTACTTTTTTGAGACAGGGCTTCTCTGTGTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTTATTTATTTACTTTTTTGAGACAGGGCTTCTCTGTGTAGC  200

seq1  CCTGGCTGTCCTGGAACTTGCTCTGTAGACCAGGCTGCCCTCAAATTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTCCTGGAACTTGCTCTGTAGACCAGGCTGCCCTCAAATTCAG  250

seq1  AGATCCGTGCTGGGGTTAATGGCATGTTACACCACTGCCTGGTTATACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCGTGCTGGGGTTAATGGCATGTTACACCACTGCCTGGTTATACTT  300

seq1  GTCGTTTTATATATGAGTTCTTGCCTAATTGAGGTTGTCAGGTTTGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTTTTATATATGAGTTCTTGCCTAATTGAGGTTGTCAGGTTTGCAAG  350

seq1  GTAACGCTGAGCCATCGTCCCAGCCCATGCATATTTATCTTCTTGAACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACGCTGAGCCATCGTCCCAGCCCATGCATATTTATCTTCTTGAACAG  400

seq1  GGTCGTCAGGTAGACTCCCCTCACTGAAATTATATTCCTCCTACAAATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTCAGGTAGACTCCCCTCACTGAAATTATATTCCTCCTACAAATGA  450

seq1  TGAACATTAAGTCGTTCTACTCCATGAGAAACGAAATTGAACAGGAAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTAAGTCGTTCTACTCCATGAGAAACGAAATTGAACAGGAAAGT  500

seq1  GACTCTGACATGAGCCAAGCCAGACTTCCATTTTCTTTTGTAAAAATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGACATGAGCCAAGCCAGACTTCCATTTTCTTTTGTAAAAATTAT  550

seq1  TTTATGTGAATAATATTTCCCAGCATGTGTGTCTGTTCACCATGTGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGAATAATATTTCCCAGCATGTGTGTCTGTTCACCATGTGTGTA  600

seq1  CTTGGTGCCCAAGACCAGAAGAGGCCACTAGATGCCTTGGACCTGGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTGCCCAAGACCAGAAGAGGCCACTAGATGCCTTGGACCTGGAATT  650

seq1  ACAGGACAGCTGTGAGGGGCCATATGGGTGCTTTGAATTGAACCTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACAGCTGTGAGGGGCCATATGGGTGCTTTGAATTGAACCTGAGAA  700

seq1  TTC  703
      |||
seq2  TTC  703