BAC Information

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BAC

Clone NameB6Ng01-115J20
Chromosome9 (Build37)
Map Location 66,556,386 - 66,713,253
singlet/doubletdoublet
Overlap geneCar12, Aph1b, LOC623488, Aph1c, Rab8b
Upstream geneZfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22, Usp3
Downstream geneRps27l, Lactb, Tpm1, Tln2, LOC100041390, LOC100040253, EG640799, LOC665794, 3300001A09Rik, EG244911, Vps13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115J20.bB6Ng01-115J20.g
ACCDH920833DH920834
length1,0741,104
definitionDH920833|Mus musculus domesticus DNA, BAC clone: B6Ng01-115J20, 5' end.DH920834|Mus musculus domesticus DNA, BAC clone: B6Ng01-115J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,712,181 - 66,713,253)(66,556,386 - 66,557,506)
sequence
gaattctctcttccactgtgggatcccggattgaactcaggctgccaagt
actttttttttttttaaccaatttgagtcacattgcctggcaaaagagga
tctctatgggtcattgttatactggatttgggggtattttaaaaagtcaa
atgacaataaagactggtgtctacacctgaaacaagtgagggcagacaca
ggtgctatgggatgcttgcagcactagtcacactactaagttttgcttac
agttccaactgctcctgcaaagccaactaccagagaggaggaaacaggag
gcgtgtaacctgggaacactggtatcagattgtattgctcacagtccagg
gccattagtgagagaggagaatgattaagaggctagtttgttagatcggc
ttgggtgggatttttgtgtgtttccaaatgcagaaagctaagaaggctcc
cgcatggaaaagtaccacagagggaagagggtgaaatccagttggtttat
gcatatgcattactgaaagcaggagctgggaaacggtccttttgggtgct
ttccacctccctgtgaagaaatattatacatggctgcatgatacccctcc
acactccaaatgctgcagttactgttcaagaccatttataggacacagtt
tataaatgttcttgaaaagtattggaaactgagtttagtgtaaaaggtaa
aagagtgggaaaaaaaactaaatacagctgagtggccagaggagggcgat
ttagtgcattgctgcccagttgtatttatctctgatccctacagaagccc
ttcctcgttcctggggctggggctatagctcagttggtagagtgcttgcc
tgtagaaagtccttgcttccctggcactgcataaacaggggtggtggagt
ggtggtgcatgtgtgcagtttagcactgggaaggaggagcagaaaagtca
attcagggtcttcttcagcttcacagtggacctgaaacagctttagctaa
tgacaccttgtcttcaaagtaaaaatgaaaattaaggcctgctttccata
ttaatgataaaagcttgctactga
gaattccacggccaagtaactgagccagcctcaccatggtaactggaggc
agtgatgggctgagagtttccacactggaatccaggaatccacgaataca
gttttcattttcattagaaaattaaggctgagattctccaaacttccttt
tattccaagctggctcaggagcgatgagagagagagagagagagagagag
agagacagagacagagacagagacagagacagagacagagacagacacac
acacacacagatttatttgattttttttccaaagcactttcacacatatg
ggcccaaacctgtagggggttagacattcttgttccaactaagaggtcag
aaaacagaggcatacacagggtgagaggcttgtgaaggttctagggctgg
ttcctggcagagccaggagtttggcactgtttcctccgggtcacactgtc
ctcttactgatcctgcctgaaactgagcagagtagagctgcagttcacac
agaggttatgaatccatgccctcgctgcatggcatgaagaaagctgtaaa
actcgctgcgttttcacatccccatcaatgagcctgcacaagtttggaca
tagaagtctgcccagtgagagccagcttagtcttttttccttcttctttc
ttcctgccccatccctctcctttgtcttcctccccaccttcttttctggt
tgaagcacagctcattaacagaacaagtagctgtgcagagagctcatgtt
ctcccccttcgctggagaactgtggagtcagagccctgaggtctcaagtt
ctctctatcgcattccatccaacgctgtgtttcatcgaggggcactccgt
ctacatctctgcctatggggcttggcgagggaggcacaacctcgtcctct
actgagaatagatcgttgggatggacacaccttgctcttatcagaaatac
agactacaccatctagaaatcagaaatcacatctctgagattcggaacta
aaacacctccatttgagcattgtggatagacatagaaaggtctgccttgt
ctgagaatgatatctgaatcagaatatagtcttgtgattctggttaggaa
ggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_66712181_66713253
seq2: B6Ng01-115J20.b_50_1123 (reverse)

seq1  TCAGTAGCATGC-TTTATCATTAAT-TGGGAAGCAGG-CTTTATTTTCAT  47
      ||||||||| || |||||||||||| ||| ||||||| ||| ||||||||
seq2  TCAGTAGCAAGCTTTTATCATTAATATGGAAAGCAGGCCTTAATTTTCAT  50

seq1  TTTTACTTTTGAGACAAGGTGTCATTAGCTAAAGCTGGTTTCAGGT-CAC  96
      |||||||||  ||||||||||||||||||||||||| ||||||||| |||
seq2  TTTTACTTTGAAGACAAGGTGTCATTAGCTAAAGCT-GTTTCAGGTCCAC  99

seq1  TGTGGAGCTGAAGATGACCCTGAATTGACTTTTCTGCCTCTCCCTTCCCA  146
      |||| ||||||||| ||||||||||||||||||||| |||  ||||||||
seq2  TGTGAAGCTGAAGAAGACCCTGAATTGACTTTTCTG-CTCCTCCTTCCCA  148

seq1  GTGCTGAAACTGCACACATGCACCACCACTCCACCACCCCTGTTTATGCA  196
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCT-AAACTGCACACATGCACCACCACTCCACCACCCCTGTTTATGCA  197

seq1  GTGCCAGGGAAGCAAGGACTTTCTACAGGCAAGCACTCTACCAACTGAGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCAGGGAAGCAAGGACTTTCTACAGGCAAGCACTCTACCAACTGAGC  247

seq1  TATAGCCCCAGCCCCAGGAACGAGGAAGGGCTTCTGTAGGGATCAGAGAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCCCCAGCCCCAGGAACGAGGAAGGGCTTCTGTAGGGATCAGAGAT  297

seq1  AAATACAACTGGGCAGCAATGCACTAAATCGCCCTCCTCTGGCCACTCAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAACTGGGCAGCAATGCACTAAATCGCCCTCCTCTGGCCACTCAG  347

seq1  CTGTATTTAGTTTTTTTTCCCACTCTTTTACCTTTTACACTAAACTCAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTAGTTTTTTTTCCCACTCTTTTACCTTTTACACTAAACTCAGT  397

seq1  TTCCAATACTTTTCAAGAACATTTATAAACTGTGTCCTATAAATGGTCTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATACTTTTCAAGAACATTTATAAACTGTGTCCTATAAATGGTCTT  447

seq1  GAACAGTAACTGCAGCATTTGGAGTGTGGAGGGGTATCATGCAGCCATGT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGTAACTGCAGCATTTGGAGTGTGGAGGGGTATCATGCAGCCATGT  497

seq1  ATAATATTTCTTCACAGGGAGGTGGAAAGCACCCAAAAGGACCGTTTCCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATTTCTTCACAGGGAGGTGGAAAGCACCCAAAAGGACCGTTTCCC  547

seq1  AGCTCCTGCTTTCAGTAATGCATATGCATAAACCAACTGGATTTCACCCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGCTTTCAGTAATGCATATGCATAAACCAACTGGATTTCACCCT  597

seq1  CTTCCCTCTGTGGTACTTTTCCATGCGGGAGCCTTCTTAGCTTTCTGCAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTCTGTGGTACTTTTCCATGCGGGAGCCTTCTTAGCTTTCTGCAT  647

seq1  TTGGAAACACACAAAAATCCCACCCAAGCCGATCTAACAAACTAGCCTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACACACAAAAATCCCACCCAAGCCGATCTAACAAACTAGCCTCT  697

seq1  TAATCATTCTCCTCTCTCACTAATGGCCCTGGACTGTGAGCAATACAATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATTCTCCTCTCTCACTAATGGCCCTGGACTGTGAGCAATACAATC  747

seq1  TGATACCAGTGTTCCCAGGTTACACGCCTCCTGTTTCCTCCTCTCTGGTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACCAGTGTTCCCAGGTTACACGCCTCCTGTTTCCTCCTCTCTGGTA  797

seq1  GTTGGCTTTGCAGGAGCAGTTGGAACTGTAAGCAAAACTTAGTAGTGTGA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTTTGCAGGAGCAGTTGGAACTGTAAGCAAAACTTAGTAGTGTGA  847

seq1  CTAGTGCTGCAAGCATCCCATAGCACCTGTGTCTGCCCTCACTTGTTTCA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGCTGCAAGCATCCCATAGCACCTGTGTCTGCCCTCACTTGTTTCA  897

seq1  GGTGTAGACACCAGTCTTTATTGTCATTTGACTTTTTAAAATACCCCCAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGACACCAGTCTTTATTGTCATTTGACTTTTTAAAATACCCCCAA  947

seq1  ATCCAGTATAACAATGACCCATAGAGATCCTCTTTTGCCAGGCAATGTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTATAACAATGACCCATAGAGATCCTCTTTTGCCAGGCAATGTGA  997

seq1  CTCAAATTGGTTAAAAAAAAAAAAAGTACTTGGCAGCCTGAGTTCAATCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAATTGGTTAAAAAAAAAAAAAGTACTTGGCAGCCTGAGTTCAATCC  1047

seq1  GGGATCCCACAGTGGAAGAGAGAATTC  1073
      |||||||||||||||||||||||||||
seq2  GGGATCCCACAGTGGAAGAGAGAATTC  1074

seq1: chr9_66556386_66557506
seq2: B6Ng01-115J20.g_67_1170

seq1  GAATTCCACGGCCAAGTAACTGAGCCAGCCTCACCATGGTAACTGGAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACGGCCAAGTAACTGAGCCAGCCTCACCATGGTAACTGGAGGC  50

seq1  AGTGATGGGCTGAGAGTTTCCACACTGGAATCCAGGAATCCACGAATACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGGCTGAGAGTTTCCACACTGGAATCCAGGAATCCACGAATACA  100

seq1  GTTTTCATTTTCATTAGAAAATTAAGGCTGAGATTCTCCAAACTTCCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCATTTTCATTAGAAAATTAAGGCTGAGATTCTCCAAACTTCCTTT  150

seq1  TATTCCAAGCTGGCTCAGGAGCGATGAGAGAGAGAGAGAGAGAGAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAAGCTGGCTCAGGAGCGATGAGAGAGAGAGAGAGAGAGAGAGAG  200

seq1  AGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGACACAC  250

seq1  ACACACACAGATTTATTTGATTTTTTTTCCAAAGCACTTTCACACATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGATTTATTTGATTTTTTTTCCAAAGCACTTTCACACATATG  300

seq1  GGCCCAAACCTGTAGGGGGTTAGACATTCTTGTTCCAACTAAGAGGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAACCTGTAGGGGGTTAGACATTCTTGTTCCAACTAAGAGGTCAG  350

seq1  AAAACAGAGGCATACACAGGGTGAGAGGCTTGTGAAGGTTCTAGGGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAGGCATACACAGGGTGAGAGGCTTGTGAAGGTTCTAGGGCTGG  400

seq1  TTCCTGGCAGAGCCAGGAGTTTGGCACTGTTTCCTCCGGGTCACACTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGCAGAGCCAGGAGTTTGGCACTGTTTCCTCCGGGTCACACTGTC  450

seq1  CTCTTACTGATCCTGCCTGAAACTGAGCAGAGTAGAGCTGCAGTTCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTACTGATCCTGCCTGAAACTGAGCAGAGTAGAGCTGCAGTTCACAC  500

seq1  AGAGGTTATGAATCCATGCCCTCGCTGCATGGCATGAAGAAAGCTGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTATGAATCCATGCCCTCGCTGCATGGCATGAAGAAAGCTGTAAA  550

seq1  ACTCGCTGCGTTTTCACATCCCCATCAATGAGCCTGCACAAGTTTGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGCTGCGTTTTCACATCCCCATCAATGAGCCTGCACAAGTTTGGACA  600

seq1  TAGAAGTCTGCCCAGTGAGAGCCAGCTTAGTCTTTTTTCCTTCTTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTCTGCCCAGTGAGAGCCAGCTTAGTCTTTTTTCCTTCTTCTTTC  650

seq1  TTCCTGCCCCATCCCTCTCCTTTGTCTTCCTCCCCACCTTCTTTTCTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCCCATCCCTCTCCTTTGTCTTCCTCCCCACCTTCTTTTCTGGT  700

seq1  TGAAGCACAGCTCATTAACAGAACAAGTAGCTGTGCAGAGAGCTCATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACAGCTCATTAACAGAACAAGTAGCTGTGCAGAGAGCTCATGTT  750

seq1  CTCCCCCTTCGCTGGAGAACTGTGGAGTCAGAGCCCTGAGGTCTCAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTTCGCTGGAGAACTGTGGAGTCAGAGCCCTGAGGTCTCAAGTT  800

seq1  CCCTCTATCGCATTCCATCCAACGCTGTG-TTCATCGAGGGGCACTCCGT  849
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTCTCTATCGCATTCCATCCAACGCTGTGTTTCATCGAGGGGCACTCCGT  850

seq1  CTACATCTCTGCCTATGGGGCTTGGCGAGGGAGGCACAACCTCGTCCTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTCTGCCTATGGGGCTTGGCGAGGGAGGCACAACCTCGTCCTCT  900

seq1  ACTGAGAATAGATCGTTGGGATGGACACACCTTGCCTCTTATCAGAAAAT  949
      |||||||||||||||||||||||||||||||||| |||||||||| ||||
seq2  ACTGAGAATAGATCGTTGGGATGGACACACCTTG-CTCTTATCAG-AAAT  948

seq1  ACAGAACTACACCATCTAGAAAATCAGAAAAATCACATCTCTGAGGAATC  999
      |||| |||||||||||||| |||||||  ||||||||||||||||  || 
seq2  ACAG-ACTACACCATCTAG-AAATCAG--AAATCACATCTCTGAG--ATT  992

seq1  CGAAACTAAAACAACTCCATTTGAAGCATTGGTGGGATAGACATAGAAAA  1049
      || |||||||||| ||||||||| |||||||   ||||||||||||||| 
seq2  CGGAACTAAAACACCTCCATTTG-AGCATTG--TGGATAGACATAGAAAG  1039

seq1  GCCTGCCTTGGTCTTGAGATAGAATTATCTGGATCAAGAATATAGTCTTG  1099
      | ||||||| ||| |||||  ||  |||||| ||| ||||||||||||||
seq2  GTCTGCCTT-GTC-TGAGAATGA--TATCTGAATC-AGAATATAGTCTTG  1084

seq1  TGAATCTGTGTTAAGAAAGGAT  1121
      ||| |||| ||| || ||||||
seq2  TGATTCTG-GTT-AGGAAGGAT  1104