BAC Information

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BAC

Clone NameB6Ng01-117M14
Chromosome9 (Build37)
Map Location 32,694,776 - 32,839,788
singlet/doubletdoublet
Overlap genenone
Upstream geneBarx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117M14.bB6Ng01-117M14.g
ACCDH922436DH922437
length1,001950
definitionDH922436|Mus musculus domesticus DNA, BAC clone: B6Ng01-117M14, 5' end.DH922437|Mus musculus domesticus DNA, BAC clone: B6Ng01-117M14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,694,776 - 32,695,726)(32,838,840 - 32,839,788)
sequence
gaattcagcaggtggctcttcccacttcctccatttctcccctgtctgga
ggcttgtttcttttccagcagtctcttgctcagctcacattcttcccagt
gctctggcggggacatctctttgtttttaaaagcaaaataaatgaattct
tgataagggctgccatgctcctaaaaatccatatggggataaaatgtaga
catcttcaaaaggaaacttgagctgccagacactgcttgggcccaccatg
aataattcaactctgtaggtagtagactcagactggttttgaagtggcct
ttacattaaccaactaaccaaaggaaagtgttgcgcctggttgcaggcaa
cacaaccaaggcccaagaaactcatcaaatatgctcactaggaatttagc
tgctgtcctcagtgtgtgtgtgctatcatatgtatagattgggaggcttc
ccccctttttttaattggatattttctttatttacacttcaaatgttatc
ccctttctcagttctccccttcctgaaaactctccatccacacaccccca
cccgcttctatgagggtgttctcctatccatccgtccactcctgtctccc
caccctccattcccctacactggggcatccatcgagccgccataggacca
agtacatccccttccactgatgcatgacaaggctatcctctgctacatat
gcagctggaactatgtgtactccttggttggtcacttaatccctgggagt
tctgtgggatctggttggttgatgttgttgttcttcctagagggttgcaa
accacttcagctccttcagccctttctctaattcctctgttggggtcccc
atgcccggtccactggttggctacgagcatccacctctgtatttgtcagg
cttctggcaggcctctcaggagacagctatatcaggctcctttcagcaag
catttctgtcatccacaataattgtcggggtttggtgactgtatatgaat
c
gaattccagagcaaagaatcaggcagttatttaaacactcatatactcac
acatttggctccagtgttgctgcaaagcctgaagtccacagatcgcaatg
gcagaacagaaagggataggagctgatgtcaccgtcctgacccagaatcc
catcttctgttgtttctcttcttaaggcttccagttcagtggatgaaggc
tactgaccttaccaaggttagcatcctccactatacaaaagctgttctta
aaatgttgacccaatctactgattagcatctgattgaataaccaaattat
agatagccatcataaggctataagtgcggagttaacaacattcccttttc
aatgcaactgcattagggattaaacaaaatggagttaactcaaaaatttg
gcagagctaagcacatattctatgctgttccgtgttcgtataacgcttct
ttcatgagtttcatttgttggcacattacttaacaagacaggccaactga
tgatcgagtagacgactcagttgccaaatcttttatgcttaaaaatattt
aagggctatggaacctatatatccacctctatgtaccttctgatatagaa
actggaaggttttcatttttcagttaaatgtgaataaacacatagactct
tggagctgtgtaggctcctcagaattagattgttcaaattcacatttgat
gccctgatgactcctactttaattttgaaattttcagcagagggtagatt
actacttcaaatgaatttattctagaatttgcatagagtgtcattactgc
attttttgacataatattctgaatttagcactctgatagttccagcctat
gactgtctcctctgtgaagaagggtgaaaaaaaaaaactataaattctat
agagattttttcttactccacaagaaaatgtgtgtgtgtgtgtctgtttg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_32694776_32695726
seq2: B6Ng01-117M14.b_48_998

seq1  GAATTCAGCAGGTGGCTCTTCCCACTTCCTCCATTTCTCCCCTGTCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCAGGTGGCTCTTCCCACTTCCTCCATTTCTCCCCTGTCTGGA  50

seq1  GGCTTGTTTCTTTTCCAGCAGTCTCTTGCTCAGCTCACATTCTTCCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTTTCTTTTCCAGCAGTCTCTTGCTCAGCTCACATTCTTCCCAGT  100

seq1  GCTCTGGCGGGGACATCTCTTTGTTTTTAAAAGCAAAATAAATGAATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGCGGGGACATCTCTTTGTTTTTAAAAGCAAAATAAATGAATTCT  150

seq1  TGATAAGGGCTGCCATGCTCCTAAAAATCCATATGGGGATAAAATGTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGGGCTGCCATGCTCCTAAAAATCCATATGGGGATAAAATGTAGA  200

seq1  CATCTTCAAAAGGAAACTTGAGCTGCCAGACACTGCTTGGGCCCACCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCAAAAGGAAACTTGAGCTGCCAGACACTGCTTGGGCCCACCATG  250

seq1  AATAATTCAACTCTGTAGGTAGTAGACTCAGACTGGTTTTGAAGTGGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATTCAACTCTGTAGGTAGTAGACTCAGACTGGTTTTGAAGTGGCCT  300

seq1  TTACATTAACCAACTAACCAAAGGAAAGTGTTGCGCCTGGTTGCAGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTAACCAACTAACCAAAGGAAAGTGTTGCGCCTGGTTGCAGGCAA  350

seq1  CACAACCAAGGCCCAAGAAACTCATCAAATATGCTCACTAGGAATTTAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCAAGGCCCAAGAAACTCATCAAATATGCTCACTAGGAATTTAGC  400

seq1  TGCTGTCCTCAGTGTGTGTGTGCTATCATATGTATAGATTGGGAGGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTCCTCAGTGTGTGTGTGCTATCATATGTATAGATTGGGAGGCTTC  450

seq1  CCCCCTTTTTTTAATTGGATATTTTCTTTATTTACACTTCAAATGTTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTTTTTAATTGGATATTTTCTTTATTTACACTTCAAATGTTATC  500

seq1  CCCTTTCTCAGTTCTCCCCTTCCTGAAAACTCTCCATCCACACACCCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTCAGTTCTCCCCTTCCTGAAAACTCTCCATCCACACACCCCCA  550

seq1  CCCGCTTCTATGAGGGTGTTCTCCTATCCATCCGTCCACTCCTGTCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCTTCTATGAGGGTGTTCTCCTATCCATCCGTCCACTCCTGTCTCCC  600

seq1  CACCCTCCATTCCCCTACACTGGGGCATCCATCGAGCCGCCATAGGACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTCCATTCCCCTACACTGGGGCATCCATCGAGCCGCCATAGGACCA  650

seq1  AGTACATCCCCTTCCACTGATGCATGACAAGGCTATCCTCTGCTACATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATCCCCTTCCACTGATGCATGACAAGGCTATCCTCTGCTACATAT  700

seq1  GCAGCTGGAACTATGTGTACTCCTTGGTTGGTCACTTAATCCCTGGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGAACTATGTGTACTCCTTGGTTGGTCACTTAATCCCTGGGAGT  750

seq1  TCTGTGGGATCTGGTTGGTTGATGTTGTTGTTCTTCCTAGAGGGTTGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGGATCTGGTTGGTTGATGTTGTTGTTCTTCCTAGAGGGTTGCAA  800

seq1  ACCACTTCAGCTCCTTCAGCCCTTTCTCTAATTCCTCTGTTGGGGTCCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTCAGCTCCTTCAGCCCTTTCTCTAATTCCTCTGTTGGGGTCCCC  850

seq1  ATGCCCGGTCCACTGGTTGGCTACGAGCATCCACCTCTGTATTTGTCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCCGGTCCACTGGTTGGCTACGAGCATCCACCTCTGTATTTGTCAGG  900

seq1  C-TCTGGCAGGGCCTCTCAGGAGACAGCTATATCAGGCTCCTTTCAGCAA  949
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGCA-GGCCTCTCAGGAGACAGCTATATCAGGCTCCTTTCAGCAA  949

seq1  GC  951
      ||
seq2  GC  951

seq1: chr9_32838840_32839788
seq2: B6Ng01-117M14.g_69_1018 (reverse)

seq1  CAAACAGACACACACACACACATTTTCTTGTGGAGTAAG-AAAAATCTCT  49
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CAAACAGACACACACACACACATTTTCTTGTGGAGTAAGAAAAAATCTCT  50

seq1  ATAGAATTTATAGTTTTTTTTTTTCACCCTTCTTCACAGAGGAGACAGTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATTTATAGTTTTTTTTTTTCACCCTTCTTCACAGAGGAGACAGTC  100

seq1  ATAGGCTGGAACTATCAGAGTGCTAAATTCAGAATATTATGTCAAAAAAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTGGAACTATCAGAGTGCTAAATTCAGAATATTATGTCAAAAAAT  150

seq1  GCAGTAATGACACTCTATGCAAATTCTAGAATAAATTCATTTGAAGTAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAATGACACTCTATGCAAATTCTAGAATAAATTCATTTGAAGTAGT  200

seq1  AATCTACCCTCTGCTGAAAATTTCAAAATTAAAGTAGGAGTCATCAGGGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACCCTCTGCTGAAAATTTCAAAATTAAAGTAGGAGTCATCAGGGC  250

seq1  ATCAAATGTGAATTTGAACAATCTAATTCTGAGGAGCCTACACAGCTCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGTGAATTTGAACAATCTAATTCTGAGGAGCCTACACAGCTCCA  300

seq1  AGAGTCTATGTGTTTATTCACATTTAACTGAAAAATGAAAACCTTCCAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTATGTGTTTATTCACATTTAACTGAAAAATGAAAACCTTCCAGT  350

seq1  TTCTATATCAGAAGGTACATAGAGGTGGATATATAGGTTCCATAGCCCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATATCAGAAGGTACATAGAGGTGGATATATAGGTTCCATAGCCCTT  400

seq1  AAATATTTTTAAGCATAAAAGATTTGGCAACTGAGTCGTCTACTCGATCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTTTAAGCATAAAAGATTTGGCAACTGAGTCGTCTACTCGATCA  450

seq1  TCAGTTGGCCTGTCTTGTTAAGTAATGTGCCAACAAATGAAACTCATGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGGCCTGTCTTGTTAAGTAATGTGCCAACAAATGAAACTCATGAA  500

seq1  AGAAGCGTTATACGAACACGGAACAGCATAGAATATGTGCTTAGCTCTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCGTTATACGAACACGGAACAGCATAGAATATGTGCTTAGCTCTGC  550

seq1  CAAATTTTTGAGTTAACTCCATTTTGTTTAATCCCTAATGCAGTTGCATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTTGAGTTAACTCCATTTTGTTTAATCCCTAATGCAGTTGCATT  600

seq1  GAAAAGGGAATGTTGTTAACTCCGCACTTATAGCCTTATGATGGCTATCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGAATGTTGTTAACTCCGCACTTATAGCCTTATGATGGCTATCT  650

seq1  ATAATTTGGTTATTCAATCAGATGCTAATCAGTAGATTGGGTCAACATTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTGGTTATTCAATCAGATGCTAATCAGTAGATTGGGTCAACATTT  700

seq1  TAAGAACAGCTTTTGTATAGTGGAGGATGCTAACCTTGGTAAGGTCAGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAACAGCTTTTGTATAGTGGAGGATGCTAACCTTGGTAAGGTCAGTA  750

seq1  GCCTTCATCCACTGAACTGGAAGCCTTAAGAAGAGAAACAACAGAAGATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCATCCACTGAACTGGAAGCCTTAAGAAGAGAAACAACAGAAGATG  800

seq1  GGATTCTGGGTCAGGACGGTGACATCAGCTCCTATCCCTTTCTGTTCTGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTGGGTCAGGACGGTGACATCAGCTCCTATCCCTTTCTGTTCTGC  850

seq1  CATTGCGATCTGTGGACTTCAGGCTTTGCAGCAACACTGGAGCCAAATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCGATCTGTGGACTTCAGGCTTTGCAGCAACACTGGAGCCAAATGT  900

seq1  GTGAGTATATGAGTGTTTAAATAACTGCCTGATTCTTTGCTCTGGAATTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTATATGAGTGTTTAAATAACTGCCTGATTCTTTGCTCTGGAATTC  950