BAC Information

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BAC

Clone NameB6Ng01-118A22
Chromosome9 (Build37)
Map Location 122,773,003 - 122,900,331
singlet/doubletdoublet
Overlap geneZfp445, LOC623874, Zfp167, EG666257, Zfp660, Zfp105, 1110059G10Rik, Kif15
Upstream geneCcbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k, Abhd5, LOC100040193, LOC100040204, 9530059O14Rik, LOC666218, LOC671232, D9Ertd402e
Downstream geneTmem42, Tgm4, Zdhhc3, Exosc7, Clec3b, Cdcp1, Tmem158, Scp2-ps2, Lars2, Limd1, Sacm1l, Slc6a20, Xtrp3s1, Ccr9, LOC100043855, Lztfl1, Fyco1, Cxcr6, Xcr1, LOC100040443, LOC100043858, LOC671399, Ccr1, Ccr1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118A22.bB6Ng01-118A22.g
ACCDH922637DH922638
length1,1861,161
definitionDH922637|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A22, 5' end.DH922638|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,773,003 - 122,774,194)(122,899,154 - 122,900,331)
sequence
gaattcaaggccagcctgggctgactacataacaagtaaggccctgtctc
aaaacaaagcagtggggtcagaagttcacactgatataaactgattatat
tttaagaagcttcgttaatagccaagtcagctagtaacatgactttaatc
ccatcacttaggagacagaggagggcagacttttgttacttggaggtaaa
gcaagttccagccagggctatgtgagactctatctcaaaaacaaacaaca
aagtaaggagagaggaaatcttcctcacaaggcctcccaataaaaaaatg
tagaacaccaagctcactgctacagacaagatgctaatcaggaagggaat
gttgagaagaaacagaatacttgaatgcagaattcaaaattctttccccc
tcaaacagtacaaattacaaaattaaacacatattttaaagtggtgaaat
gtcacaagtgccagtaacaagaacacatcaaccttatctaagcacaggaa
aacatcagatataagaacattctaatatttcaagtaacaaaatacttcaa
aaaagattttagggactggagaggtgggctgttgatttaagagcactgac
cactgcttccccaggagcctagctgaccatagttcaattccccgtgccca
cctgcaagcttacaacagtcctgtaagtctagtcttaagagatctgacag
tctcttcagacttccataggcaccaggtacacacatggcatataggcaca
tacagtgaaacatttacataacaaaatcatttatttgttttattttattt
ttgtcaaggtcttaagtatggctatgcttggtaatgaacagtactaccca
ggaaagttaggcaggaacagcctataggatggaccactgagtaaagttat
ctagtgtcaagactgtgtagttcagttgaacctgagttcaatcgcaagag
ccaacacagcagcaggaaagacacccacaagtgtcttctaatccccacag
gtaccactgccacacatatacatgcactcaaacaaaaaatagaatgtagg
cagtgtggcagcacacaccttaaaccccagcactgagagtagaaaatagg
tggatttctatgagtctatgcagtctgcccacatgtgatgatgagctcca
ggcctaattaagaaggggaggttagggtaaagccca
gaattcttcatattcttgctttgaattattcagttctgtctgaatttgca
ggagttgtgcttttaacttctcggtgtttgtgaagaaacttgattctttt
agtgctttgggagaaaatccttgcagacctgttaagaaggaaaccactcc
agtctttgaaagacagaaatgacaagacacttttccaagctctcctccag
gtacaatctgagacacgaggataagaaagaaatggacaggagggcgagtg
tgagaaatgtgaggacacagattcacaggacactctgggtgacagtgtac
ccagaggtcagtgagagttgtgttcaaggagcaaagaccacaggagggag
aagtgtagttaagggaacactgttccctaggatgaagagctaatggacac
tactgagcaccatgcttggtgctagatggagaacactggcacagctgaac
ttgtgaaaattgatgtgggtagccattgtgaacaataattttgaagaaaa
aactgattaacaaggataattttaattttgcatataaaatcgagtttctc
caaatattgtgaatctttttttttttttaactaattcacaattgaataat
agaaggcttagaaaatgtaaaaggcaagacaaaacaaaagcaaacaacat
caaaccaaagcagcactcggaggcagaggcaggcagatccttgagttcaa
agccagcctggactagagtgacttccaggacagccagggctacacagaga
aaccctgccttgaaaagaaatcaagaaacagatgtatgggaggacggata
gatgggaaacacagagtgactgagaagggactggggaagagttcagtggc
agagtggctgcttagcatctgaaacccaaccttgaatttgatccccagta
ccacaaaaggaaataaaataaaaaaggaaagaggcaacaattcagaataa
acattagaattttcttaacttaagaagaaacaaagagctaaacagcggta
gtgcagccctgagcagcagatctgtggtgagttccaggacagccacagtg
acaccagagccctgttctgttttgaggagatagagaacagtaaatgctgc
cctcagatggacaaccgacgtaccaattctcggactcgcagcagcagtct
acacatccccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_122773003_122774194
seq2: B6Ng01-118A22.b_48_1233

seq1  GAATTCAAGGCCAGCCTGGGCTGACTACATAACAAGTAAGGCCCTGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGGGCTGACTACATAACAAGTAAGGCCCTGTCTC  50

seq1  AAAACAAAGCAGTGGGGTCAGAAGTTCACACTGATATAAACTGATTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAGCAGTGGGGTCAGAAGTTCACACTGATATAAACTGATTATAT  100

seq1  TTTAAGAAGCTTCGTTAATAGCCAAGTCAGCTAGTAACATGACTTTAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAGCTTCGTTAATAGCCAAGTCAGCTAGTAACATGACTTTAATC  150

seq1  CCATCACTTAGGAGACAGAGGAGGGCAGACTTTTGTTACTTGGAGGTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCACTTAGGAGACAGAGGAGGGCAGACTTTTGTTACTTGGAGGTAAA  200

seq1  GCAAGTTCCAGCCAGGGCTATGTGAGACTCTATCTCAAAAACAAACAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTTCCAGCCAGGGCTATGTGAGACTCTATCTCAAAAACAAACAACA  250

seq1  AAGTAAGGAGAGAGGAAATCTTCCTCACAAGGCCTCCCAATAAAAAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGAGAGAGGAAATCTTCCTCACAAGGCCTCCCAATAAAAAAATG  300

seq1  TAGAACACCAAGCTCACTGCTACAGACAAGATGCTAATCAGGAAGGGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACACCAAGCTCACTGCTACAGACAAGATGCTAATCAGGAAGGGAAT  350

seq1  GTTGAGAAGAAACAGAATACTTGAATGCAGAATTCAAAATTCTTTCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAAGAAACAGAATACTTGAATGCAGAATTCAAAATTCTTTCCCCC  400

seq1  TCAAACAGTACAAATTACAAAATTAAACACATATTTTAAAGTGGTGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACAGTACAAATTACAAAATTAAACACATATTTTAAAGTGGTGAAAT  450

seq1  GTCACAAGTGCCAGTAACAAGAACACATCAACCTTATCTAAGCACAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAAGTGCCAGTAACAAGAACACATCAACCTTATCTAAGCACAGGAA  500

seq1  AACATCAGATATAAGAACATTCTAATATTTCAAGTAACAAAATACTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAGATATAAGAACATTCTAATATTTCAAGTAACAAAATACTTCAA  550

seq1  AAAAGATTTTAGGGACTGGAGAGGTGGGCTGTTGATTTAAGAGCACTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATTTTAGGGACTGGAGAGGTGGGCTGTTGATTTAAGAGCACTGAC  600

seq1  CACTGCTTCCCCAGGAGCCTAGCTGACCATAGTTCAATTCCCCGTGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCTTCCCCAGGAGCCTAGCTGACCATAGTTCAATTCCCCGTGCCCA  650

seq1  CCTGCAAGCTTACAACAGTCCTGTAAGTCTAGTCTTAAGAGATCTGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCAAGCTTACAACAGTCCTGTAAGTCTAGTCTTAAGAGATCTGACAG  700

seq1  TCTCTTCAGACTTCCATAGGCACCAGGTACACACATGGCATATAGGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCAGACTTCCATAGGCACCAGGTACACACATGGCATATAGGCACA  750

seq1  TACAGTGAAACATTTACATAACAAAATCATTTATTTGTTTTATTTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGAAACATTTACATAACAAAATCATTTATTTGTTTTATTTTATTT  800

seq1  TTGTCAAGGTCTTAAGTATGGCTATGCTTGGTAATGAACAGTACTACCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGGTCTTAAGTATGGCTATGCTTGGTAATGAACAGTACTACCCA  850

seq1  GGAAAGTTAGGCAGGAACAGCCTATAGGATGGACCACTGAGTAAAGTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTAGGCAGGAACAGCCTATAGGATGGACCACTGAGTAAAGTTAT  900

seq1  CTAGTGTCAAGACTGTGTAGTTCAGTTGAACCTGAGTTCAATCGCAAGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTCAAGACTGTGTAGTTCAGTTGAACCTGAGTTCAATCGCAAGAG  950

seq1  CCAACACAGCAGCAGGAAAGACACCCACAAGTTGTCTTCTAATCCCCACA  1000
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCAACACAGCAGCAGGAAAGACACCCACAAG-TGTCTTCTAATCCCCACA  999

seq1  GGTA-CACTGCCACACATATACATGCACTCAAAC-AAAAATAAGATGTAG  1048
      |||| ||||||||||||||||||||||||||||| |||||||  ||||||
seq2  GGTACCACTGCCACACATATACATGCACTCAAACAAAAAATAGAATGTAG  1049

seq1  GGCCAAGTGTGGCAGCACACACCTTTAACCCCAGCACTGAGGAAGTAG-A  1097
      |    |||||||||||||||||||| |||||||||||||||  ||||| |
seq2  G---CAGTGTGGCAGCACACACCTTAAACCCCAGCACTGAG--AGTAGAA  1094

seq1  AATAGGTGGATTTCTATGAGTTCTATGCCAGTCTGCCCACATGTTTGATG  1147
      |||||||||||||||||||| |||||| |||||||||||||||  |||||
seq2  AATAGGTGGATTTCTATGAG-TCTATG-CAGTCTGCCCACATG--TGATG  1140

seq1  TATGAGTTCCAGG-CTAATATAAGAGGGGGAGGTTAGGG--AAGCCCA  1192
       ||||| |||||| ||||| ||||| |||||||||||||  |||||||
seq2  -ATGAGCTCCAGGCCTAAT-TAAGAAGGGGAGGTTAGGGTAAAGCCCA  1186

seq1: chr9_122899154_122900331
seq2: B6Ng01-118A22.g_68_1228 (reverse)

seq1  GGGGGATGGTGTAGCACTTGCTGCTGCGAGTTCTCTGAGATTTGGTAACG  50
      ||||||| |||||| || ||||||||||||   || |||| ||||| |||
seq2  GGGGGAT-GTGTAG-AC-TGCTGCTGCGAG---TCCGAGAATTGGT-ACG  43

seq1  TTCGGTTTGCTCCATTCTGA-GGCAGCATTTACTGCTCCTTCCTTTATCT  99
       ||||||   |||| ||||| ||||||||||||||     | || |||||
seq2  -TCGGTT--GTCCA-TCTGAGGGCAGCATTTACTG-----TTCTCTATCT  84

seq1  CCCTCATACAAGACAGGGCCTCT-GTGTCACTGTGGCTGTCCTGGAACTC  148
      ||   | |||  |||||| |||| ||||||||||||||||||||||||||
seq2  CCTCAAAACAGAACAGGG-CTCTGGTGTCACTGTGGCTGTCCTGGAACTC  133

seq1  A-CACAGATCTGCCTGCCTCAAGGCTGCACTACCGCTGTTTAGCTCTTTG  197
      | |||||||||| ||| |||| ||||||||||||||||||||||||||||
seq2  ACCACAGATCTG-CTG-CTCAGGGCTGCACTACCGCTGTTTAGCTCTTTG  181

seq1  TTTCTTTTTAAGTTAAGAAAATTCTAATGTTTATTCTGAATTGTTTGCCT  247
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTCTTCTTAAGTTAAGAAAATTCTAATGTTTATTCTGAATTG-TTGCCT  230

seq1  CTTTCCTTTTTTATTTTATTTCCTTTTGTGGTACTGGGGATCAAATTCAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTTTTATTTTATTTCCTTTTGTGGTACTGGGGATCAAATTCAA  280

seq1  GGTTGGGTTTCAGATGCTAAGCAGCCACTCTGCCACTGAACTCTTCCCCA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGGTTTCAGATGCTAAGCAGCCACTCTGCCACTGAACTCTTCCCCA  330

seq1  GTCCCTTCTCAGTCACTCTGTGTTTCCCATCTATCCGTCCTCCCATACAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTCTCAGTCACTCTGTGTTTCCCATCTATCCGTCCTCCCATACAT  380

seq1  CTGTTTCTTGATTTCTTTTCAAGGCAGGGTTTCTCTGTGTAGCCCTGGCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCTTGATTTCTTTTCAAGGCAGGGTTTCTCTGTGTAGCCCTGGCT  430

seq1  GTCCTGGAAGTCACTCTAGTCCAGGCTGGCTTTGAACTCAAGGATCTGCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAAGTCACTCTAGTCCAGGCTGGCTTTGAACTCAAGGATCTGCC  480

seq1  TGCCTCTGCCTCCGAGTGCTGCTTTGGTTTGATGTTGTTTGCTTTTGTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCGAGTGCTGCTTTGGTTTGATGTTGTTTGCTTTTGTTT  530

seq1  TGTCTTGCCTTTTACATTTTCTAAGCCTTCTATTATTCAATTGTGAATTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTGCCTTTTACATTTTCTAAGCCTTCTATTATTCAATTGTGAATTA  580

seq1  GTTAAAAAAAAAAAAAGATTCACAATATTTGGAGAAACTCGATTTTATAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAAAAAAAAAAAGATTCACAATATTTGGAGAAACTCGATTTTATAT  630

seq1  GCAAAATTAAAATTATCCTTGTTAATCAGTTTTTTCTTCAAAATTATTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATTAAAATTATCCTTGTTAATCAGTTTTTTCTTCAAAATTATTGT  680

seq1  TCACAATGGCTACCCACATCAATTTTCACAAGTTCAGCTGTGCCAGTGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAATGGCTACCCACATCAATTTTCACAAGTTCAGCTGTGCCAGTGTT  730

seq1  CTCCATCTAGCACCAAGCATGGTGCTCAGTAGTGTCCATTAGCTCTTCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCTAGCACCAAGCATGGTGCTCAGTAGTGTCCATTAGCTCTTCAT  780

seq1  CCTAGGGAACAGTGTTCCCTTAACTACACTTCTCCCTCCTGTGGTCTTTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGGAACAGTGTTCCCTTAACTACACTTCTCCCTCCTGTGGTCTTTG  830

seq1  CTCCTTGAACACAACTCTCACTGACCTCTGGGTACACTGTCACCCAGAGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTGAACACAACTCTCACTGACCTCTGGGTACACTGTCACCCAGAGT  880

seq1  GTCCTGTGAATCTGTGTCCTCACATTTCTCACACTCGCCCTCCTGTCCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTGAATCTGTGTCCTCACATTTCTCACACTCGCCCTCCTGTCCAT  930

seq1  TTCTTTCTTATCCTCGTGTCTCAGATTGTACCTGGAGGAGAGCTTGGAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCTTATCCTCGTGTCTCAGATTGTACCTGGAGGAGAGCTTGGAAA  980

seq1  AGTGTCTTGTCATTTCTGTCTTTCAAAGACTGGAGTGGTTTCCTTCTTAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTGTCATTTCTGTCTTTCAAAGACTGGAGTGGTTTCCTTCTTAA  1030

seq1  CAGGTCTGCAAGGATTTTCTCCCAAAGCACTAAAAGAATCAAGTTTCTTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGCAAGGATTTTCTCCCAAAGCACTAAAAGAATCAAGTTTCTTC  1080

seq1  ACAAACACCGAGAAGTTAAAAGCACAACTCCTGCAAATTCAGACAGAACT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACACCGAGAAGTTAAAAGCACAACTCCTGCAAATTCAGACAGAACT  1130

seq1  GAATAATTCAAAGCAAGAATATGAAGAATTC  1178
      |||||||||||||||||||||||||||||||
seq2  GAATAATTCAAAGCAAGAATATGAAGAATTC  1161