BAC Information

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BAC

Clone NameB6Ng01-120H14
Chromosome9 (Build37)
Map Location 100,440,691 - 100,560,482
singlet/doubletdoublet
Overlap geneNck1, LOC633385, Tmem22, LOC667486, Stag1
Upstream geneArmc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429, Sox14, LOC667456, 4930519F24Rik, LOC100040590, Il20rb
Downstream geneLOC100040990, Pccb, LOC100041013, LOC100040707, Msl2l1, 3222402P14Rik, LOC100041065, EG382099
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120H14.bB6Ng01-120H14.g
ACCDH924409DH924410
length6881,181
definitionDH924409|Mus musculus domesticus DNA, BAC clone: B6Ng01-120H14, 5' end.DH924410|Mus musculus domesticus DNA, BAC clone: B6Ng01-120H14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,559,797 - 100,560,482)(100,440,691 - 100,441,801)
sequence
gaattcacaaaaataaagcaagaaaaaaatggcaataagcaaataatcaa
attggaaatagctacaggatacaagaccaaaaaaacaaacaacaacaaca
aaaaaaaaactattgaacttcattatacaaaaaataatcccaaaagtaaa
ttaattaaacaatttcacttaaacaccatccaaaaattataaagtactaa
aaagagaacaaaacatgactacaccaagtctcagtaacgaaggttcagag
aacgaaatagctaaaacttggaaatcgaaaacttgacatactggcacata
cctgaaattatagcactcaaatagcaaaacagaaaaataatttcaagttc
aaagccaacctgtactgtacagcaaaacccagctaaggaaaagtcaggaa
agagggaggaagaagaacaagagaagagaaatggggagagagaaaaatgg
ggtaggggtggaggaggagaccaaatgcccaacagttgatatataaatta
acaaaataaaatattcctaaccataaaaaatactgagctgggcagtggtg
gcacacacctttaaccccagcacttgggagacagaggcaggtggatttct
aaagtttaaggccagactggtctacagagtgagttccaggacagccaggg
ccacacagagaaaccatcttgggggggtggggagaatg
gaattctcaggaggatttatagaagccaacaaatacataaaaaatactca
tcgttcatcactagagaaatgcaaatcaaaaccatgtgattaaaagaaaa
caagtaggcacagatgagggtgagctgagaaattagtgttggcaatgtat
tagttacttttctattgctgtgatccaggtaacttactaagactgttggt
ttgtggttccaaagaggtgagaatacatcatggaaaaaagacatgcagta
aaatgacaggcatggcaacaggaacagaagctaagaactaatcacatatt
caatggcaaacaagaagcagaggcagtaaactggaaatgggtgttgcaaa
agcccacccagtgacattcttcctccagcaaggctgtaccacccctcccc
aaacagcagcacagagtaggattcaagtactaaactatctgagccaatcg
gggactttgtcattaaatcatcacagtaggcatgcacaggactgtacagt
gtggaggttcctggggaaacaagaactatggtatgatccggcatgcctac
ttctaggaatatacttgaaggaactgaaatcagcatgctgaagaaataat
cagcactcacacttatctatctgttttggctagggttttgctgctgtttt
ggtgtgtgtggtctggtctcaaggtgtagtccaggttagccttgaaatta
ttatacaggacacaattgccctaaaattgtgcccttcttaccttcagcct
ccctagcactgggaccacaggtctgttgaccacacttcttcataccttta
ttgcacaataccaacccatataatcaatgtcctatgtctatcgatagaga
aaatgttaagtttacataatggagtgcccaaggaggtcagatcttcagaa
aagagggacagaacagtgtgatggccttgtctgtgctgggactgaaccag
gttctctggagagcaccagtgctctgacataaagtaggcagggggataaa
ctattcgattagttgatataaaataaaaagcagattggtaagactaggaa
gaaaggccatagcagcttccacatttctgcctctccaggaatgttcaatc
cccgggtttggttcgcataaactggatgcttaagagcccaatggcattat
ctttttggagtgatctacacacacatgattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_100559797_100560482
seq2: B6Ng01-120H14.b_45_732 (reverse)

seq1  CATTCTCCCCA-CCCCCCAAGATGGTTTCTCTGTGTGGCCCTGGCTGTCC  49
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCCCCACCCCCCCAAGATGGTTTCTCTGTGTGGCCCTGGCTGTCC  50

seq1  TGGAACTCACTCTGTAGACCAGTCTGGCCTTAAAC-TTAGAAATCCACCT  98
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGGAACTCACTCTGTAGACCAGTCTGGCCTTAAACTTTAGAAATCCACCT  100

seq1  GCCTCTGTCTCCCAAGTGCTGGGGTTAAAGGTGTGTGCCACCACTGCCCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGTCTCCCAAGTGCTGGGGTTAAAGGTGTGTGCCACCACTGCCCA  150

seq1  GCTCAGTATTTTTTATGGTTAGGAATATTTTATTTTGTTAATTTATATAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTATTTTTTATGGTTAGGAATATTTTATTTTGTTAATTTATATAT  200

seq1  CAACTGTTGGGCATTTGGTCTCCTCCTCCACCCCTACCCCATTTTTCTCT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTTGGGCATTTGGTCTCCTCCTCCACCCCTACCCCATTTTTCTCT  250

seq1  CTCCCCATTTCTCTTCTCTTGTTCTTCTTCCTCCCTCTTTCCTGACTTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCATTTCTCTTCTCTTGTTCTTCTTCCTCCCTCTTTCCTGACTTTT  300

seq1  CCTTAGCTGGGTTTTGCTGTACAGTACAGGTTGGCTTTGAACTTGAAATT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCTGGGTTTTGCTGTACAGTACAGGTTGGCTTTGAACTTGAAATT  350

seq1  ATTTTTCTGTTTTGCTATTTGAGTGCTATAATTTCAGGTATGTGCCAGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTGTTTTGCTATTTGAGTGCTATAATTTCAGGTATGTGCCAGTA  400

seq1  TGTCAAGTTTTCGATTTCCAAGTTTTAGCTATTTCGTTCTCTGAACCTTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGTTTTCGATTTCCAAGTTTTAGCTATTTCGTTCTCTGAACCTTC  450

seq1  GTTACTGAGACTTGGTGTAGTCATGTTTTGTTCTCTTTTTAGTACTTTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGAGACTTGGTGTAGTCATGTTTTGTTCTCTTTTTAGTACTTTAT  500

seq1  AATTTTTGGATGGTGTTTAAGTGAAATTGTTTAATTAATTTACTTTTGGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTGGATGGTGTTTAAGTGAAATTGTTTAATTAATTTACTTTTGGG  550

seq1  ATTATTTTTTGTATAATGAAGTTCAATAGTTTTTTTTTTGTTGTTGTTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTTTGTATAATGAAGTTCAATAGTTTTTTTTTTGTTGTTGTTGT  600

seq1  TTGTTTTTTTGGTCTTGTATCCTGTAGCTATTTCCAATTTGATTATTTGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTTGGTCTTGTATCCTGTAGCTATTTCCAATTTGATTATTTGC  650

seq1  TTATTGCCATTTTTTTCTTGCTTTATTTTTGTGAATTC  686
      ||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCCATTTTTTTCTTGCTTTATTTTTGTGAATTC  688

seq1: chr9_100440691_100441801
seq2: B6Ng01-120H14.g_180_1248

seq1  GATGAGGGTGAGCTGAGAAATTAGTGTTGGCAATGTATTAGTTACTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGGTGAGCTGAGAAATTAGTGTTGGCAATGTATTAGTTACTTTTC  50

seq1  TATTGCTGTGATCCAGGTAACTTACTAAGACTGTTGGTTTGTGGTTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTGTGATCCAGGTAACTTACTAAGACTGTTGGTTTGTGGTTCCAA  100

seq1  AGAGGTGAGAATACATCATGGAAAAAAGACATGCAGTAAAATGACAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGAGAATACATCATGGAAAAAAGACATGCAGTAAAATGACAGGCA  150

seq1  TGGCAACAGGAACAGAAGCTAAGAACTAATCACATATTCAATGGCAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACAGGAACAGAAGCTAAGAACTAATCACATATTCAATGGCAAACA  200

seq1  AGAAGCAGAGGCAGTAAACTGGAAATGGGTGTTGCAAAAGCCCACCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGAGGCAGTAAACTGGAAATGGGTGTTGCAAAAGCCCACCCAGT  250

seq1  GACATTCTTCCTCCAGCAAGGCTGTACCACCCCTCCCCAAACAGCAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTTCCTCCAGCAAGGCTGTACCACCCCTCCCCAAACAGCAGCAC  300

seq1  AGAGTAGGATTCAAGTACTAAACTATCTGAGCCAATCGGGGACTTTGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGGATTCAAGTACTAAACTATCTGAGCCAATCGGGGACTTTGTCA  350

seq1  TTAAATCATCACAGTAGGCATGCACAGGACTGTACAGTGTGGAGGTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCATCACAGTAGGCATGCACAGGACTGTACAGTGTGGAGGTTCCT  400

seq1  GGGGAAACAAGAACTATGGTATGATCCGGCATGCCTACTTCTAGGAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAACAAGAACTATGGTATGATCCGGCATGCCTACTTCTAGGAATAT  450

seq1  ACTTGAAGGAACTGAAATCAGCATGCTGAAGAAATAATCAGCACTCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAGGAACTGAAATCAGCATGCTGAAGAAATAATCAGCACTCACAC  500

seq1  TTATCTATCTGTTTTGGCTAGGGTTTTGCTGCTGTTTTGGTGTGTGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATCTGTTTTGGCTAGGGTTTTGCTGCTGTTTTGGTGTGTGTGGT  550

seq1  CTGGTCTCAAGGTGTAGTCCAGGTTAGCCTTGAAATTATTATACAGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTCAAGGTGTAGTCCAGGTTAGCCTTGAAATTATTATACAGGACA  600

seq1  CAATTGCCCTAAAATTGTGCCCTTCTTACCTTCAGCCTCCCTAGCACTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGCCCTAAAATTGTGCCCTTCTTACCTTCAGCCTCCCTAGCACTGG  650

seq1  GACCACAGGTCTGTTGACCACACTTCTTCATACCTTTATTGCACAATACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACAGGTCTGTTGACCACACTTCTTCATACCTTTATTGCACAATACC  700

seq1  AACCCATATAATCAATGTCCTATGTCTATCGATAGAGAAAATGTTAAGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AACCCATATAATCAATGTCCTATGTCTATCGATAGAGAAAATGTTAAGTT  750

seq1  TACATAATGGAGTGCCCAAGGAGGTCAGATCTTCAGGAAAAAGAGGGACA  800
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  TACATAATGGAGTGCCCAAGGAGGTCAGATCTTCAG--AAAAGAGGGACA  798

seq1  G-ACAGTTGTGAATGGCCTTGTCTGTGCTGGGAACTGAACCCAGGTTCTC  849
      | |||| |||| |||||||||||||||||||| |||||| ||||||||||
seq2  GAACAG-TGTG-ATGGCCTTGTCTGTGCTGGG-ACTGAA-CCAGGTTCTC  844

seq1  TGGAAGAGCAACCAGTGCTCTGAACCATAAAGTAGGCAGGGGGAATAAAA  899
      ||| ||||| |||||||||||||  |||||||||||||||||||   |||
seq2  TGG-AGAGC-ACCAGTGCTCTGA--CATAAAGTAGGCAGGGGGA--TAAA  888

seq1  CTATTCAGATATTAGTTGATATAAAAATAAAAAGCAAGATTGGTAAGACA  949
      ||||||    |||||||||||| |||||||||||| ||||||||||||| 
seq2  CTATTC---GATTAGTTGATAT-AAAATAAAAAGC-AGATTGGTAAGAC-  932

seq1  TAGAAAGAAAGCCCATAGCAGCTTCCACAATTTCTGCCTCTCCCAAGGAA  999
      ||| ||||||| |||||||||||||||| ||||||||||||||  ||| |
seq2  TAGGAAGAAAGGCCATAGCAGCTTCCAC-ATTTCTGCCTCTCC--AGG-A  978

seq1  ATGTTTCCAATCCCCTGTTTATGTTTCTGCAATAGAGCTGGAATGCTTTA  1049
      |||||  |||||||| | || || ||| || ||| | |||| ||||||  
seq2  ATGTT--CAATCCCCGGGTT-TGGTTC-GC-ATA-AACTGG-ATGCTT--  1019

seq1  AAGATGCCACATTGTGCCAAATTATTCTATTATTTGAGTTGATCTACACA  1099
      |||| ||| || || ||      ||| | || || ||| |||||||||||
seq2  AAGA-GCC-CAATG-GC------ATTATCTTTTTGGAG-TGATCTACACA  1059

seq1  ACAACATGATTT  1111
         |||||||||
seq2  --CACATGATTT  1069