BAC Information

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BAC

Clone NameB6Ng01-120J21
Chromosome9 (Build37)
Map Location 27,014,033 - 27,205,001
singlet/doubletdoublet
Overlap geneIgsf9b, Spata19
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3
Downstream geneLOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120J21.bB6Ng01-120J21.g
ACCDH924517DH924518
length1,1361,065
definitionDH924517|Mus musculus domesticus DNA, BAC clone: B6Ng01-120J21, 5' end.DH924518|Mus musculus domesticus DNA, BAC clone: B6Ng01-120J21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,203,866 - 27,205,001)(27,014,033 - 27,015,092)
sequence
gaattccctcctctagaagtttgataagttagtaacaatgccagcacttc
tcttttctcttaccagcccaaaaccccacatcctctcagacatgaattaa
actccactctaggtggggaattcggttaaaaaaaaaatgagtttctcagt
tgtgtagagagtgaagacatgattcctgtctcctatttatccctgcagtc
tagaactttgggtgatgagtcatagaagaattctactcactttgttcaac
cagtgctgcacaacggatacagcttcgctttcttcaacttcaatgtcctg
gaacaagttggtaaaaacgattacttcagaaaacccagagagaggctccc
accctcaccactaagaccaatgtcacatgacatgagatgactctgaagca
cagcaggagtgtagaagggagacgacaggctggccacagttccaaatggc
cactgctgccacccactcaccgagttcacccttggtgggaagggtagccc
tacggttttccgggcaaagatgtacataatccatgttgtaatgatcatct
tcagacttacagagggactccttggctccctccttccattgaagctgtct
gagaacttctgtgaaatagcaaggttattgaagggaggttccccctgatt
ggttggcaagtgatgatgtgacaatgacctccttcaacttccagggtgag
agtgcagagggaaaagaggggcttcaaactgtcttcttgatggtggctca
gaagaggaggggcatagaagatggacgatatacaaaaggaattaccaaaa
tcagaagtcttggggtggcttactgtcttaagcaatgctaaataaaattt
ctaaaaacgaaaaaaaaaaaaattacaagtccaagaagaaattatgggct
aaagcagctgggcgggttaaacaaccattcagaccagcatcatgggttat
taatcttctcagtgaggaggaaacaaattgatccacccaaactgcccaga
gaaagagcatagggatattttccatttttgtttgttctgaccacctcaga
tgacgcagatcactgaaaagcacctaggggatgaggggctgctttcagtt
caggaagtacttgctttttaagcacgagggaactgg
gaattcaggaggatgtgggtttcaggagcatgatgtggaaaactgaagat
gctcctctgatgcttctctgtggtccctatgacagggctggggctacatc
ttacatataatgctccatctcaagccagggcagtgccatctcatgcccta
agggaagccctcattgtttccagcttctttattttaagagataaacctga
ccggtaagaagaaggaagattagatcttgtataattaccagagtgccaca
tattataatggatgtgacacacaaatggagaaaattagggatgtcacttc
ttcaggaacacacagtgacaagttcatattcctgggacacagatgcagat
gttcacaactcccatgaagatcaccactgagggtgacactgcccagggag
tctgggtgcatcctgagctgttccttctgtggtccctgctctttgctgtt
gctgtcgttcatgccatcttgaccaccagattagtcaaggttctgctgac
ttgctgtgatctcgactcctattcttcaggtccaaaatattcatgcagag
tctcatcttatactgtgtattatgaaattggggaaacccaagatagtttg
tattaggggcattccttaggagtattgagtgcaggcttatcagaattctt
tcctgcaatgtacatctggagcatactggtcatgagaactttgacagttg
ggtagacaaccagcagagtgagtagccaacgaaccattatcttttctgca
gagatcattagaaacaaggtgttggctcttacctctacttagaggcatgc
ccttccccagcaggagaaagactggtggccctttcagcatttttttcagc
tctaagcagtccagtacttcttcctaaagttgtttcctcatgtagtcttt
ggttcctattggctgcagaagcagcaaacatctctatcacgggacacttc
ctcttcacttaacatttggggttgcagccctttgctgttcattgcatgga
acaacagccatcagcatgtagaatgagttgcctagaataaagaagtacat
tatagaggctgagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_27203866_27205001
seq2: B6Ng01-120J21.b_48_1183 (reverse)

seq1  CCAGT--CCTCGTGCTTAAAAAGCAAGTACTTTCCTG-ACTG-AAGCAGC  46
      |||||  ||||||||||||||||||||||| |||||| |||| |||||||
seq2  CCAGTTCCCTCGTGCTTAAAAAGCAAGTAC-TTCCTGAACTGAAAGCAGC  49

seq1  CCCTCATCCCCTAGGGTGCTTTTCAGTGATCTGCGTCATCTGA-GTGGTC  95
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  CCCTCATCCCCTA-GGTGCTTTTCAGTGATCTGCGTCATCTGAGGTGGTC  98

seq1  AGAACAAACAAAAATGG-AAATATCCCTATTGCTTCTTTCTCTGGGCAGT  144
      ||||||||||||||||| ||||||||||| ||| ||||||||||||||| 
seq2  AGAACAAACAAAAATGGAAAATATCCCTA-TGC-TCTTTCTCTGGGCAG-  145

seq1  TTTGGGTGGATCAATTTTGTTTCCTCCTTCACTTGAGAAGATTAATAA-C  193
      |||||||||||||| |||||||||||| |||| ||||||||||||||| |
seq2  TTTGGGTGGATCAA-TTTGTTTCCTCC-TCAC-TGAGAAGATTAATAACC  192

seq1  CATGATGCTGGTCTGAATGGTTGTTTAA-CCGGCCAGCTGCTTTAG-CCA  241
      |||||||||||||||||||||||||||| ||| ||||||||||||| |||
seq2  CATGATGCTGGTCTGAATGGTTGTTTAACCCGCCCAGCTGCTTTAGCCCA  242

seq1  TAATTTCTTCTTTGGACTTGTAATTTTTTTTTTTTTCGTTTTTAGAAATT  291
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTTC-TTGGACTTGTAATTTTTTTTTTTTTCGTTTTTAGAAATT  291

seq1  TTATTTAGCATTGCTTAAGACAGTAAGCCACCCCAAGACTTCTGATTTTG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAGCATTGCTTAAGACAGTAAGCCACCCCAAGACTTCTGATTTTG  341

seq1  GTAATTCCTTTTGTATATCGTCCATCTTCTATGCCCCTCCTCTTCTGAGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCCTTTTGTATATCGTCCATCTTCTATGCCCCTCCTCTTCTGAGC  391

seq1  CACCATCAAGAAGACAGTTTGAAGCCCCTCTTTTCCCTCTGCACTCTCAC  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCAAGAAGACAGTTTGAAGCCCCTCTTTTCCCTCTGCACTCTCAC  441

seq1  CCTGGAAGTTGAAGGAGGTCATTGTCACATCATCACTTGCCAACCAATCA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAAGTTGAAGGAGGTCATTGTCACATCATCACTTGCCAACCAATCA  491

seq1  GGGGGAACCTCCCTTCAATAACCTTGCTATTTCACAGAAGTTCTCAGACA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAACCTCCCTTCAATAACCTTGCTATTTCACAGAAGTTCTCAGACA  541

seq1  GCTTCAATGGAAGGAGGGAGCCAAGGAGTCCCTCTGTAAGTCTGAAGATG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAATGGAAGGAGGGAGCCAAGGAGTCCCTCTGTAAGTCTGAAGATG  591

seq1  ATCATTACAACATGGATTATGTACATCTTTGCCCGGAAAACCGTAGGGCT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTACAACATGGATTATGTACATCTTTGCCCGGAAAACCGTAGGGCT  641

seq1  ACCCTTCCCACCAAGGGTGAACTCGGTGAGTGGGTGGCAGCAGTGGCCAT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCCCACCAAGGGTGAACTCGGTGAGTGGGTGGCAGCAGTGGCCAT  691

seq1  TTGGAACTGTGGCCAGCCTGTCGTCTCCCTTCTACACTCCTGCTGTGCTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTGTGGCCAGCCTGTCGTCTCCCTTCTACACTCCTGCTGTGCTT  741

seq1  CAGAGTCATCTCATGTCATGTGACATTGGTCTTAGTGGTGAGGGTGGGAG  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCATCTCATGTCATGTGACATTGGTCTTAGTGGTGAGGGTGGGAG  791

seq1  CCTCTCTCTGGGTTTTCTGAAGTAATCGTTTTTACCAACTTGTTCCAGGA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCTGGGTTTTCTGAAGTAATCGTTTTTACCAACTTGTTCCAGGA  841

seq1  CATTGAAGTTGAAGAAAGCGAAGCTGTATCCGTTGTGCAGCACTGGTTGA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAAGTTGAAGAAAGCGAAGCTGTATCCGTTGTGCAGCACTGGTTGA  891

seq1  ACAAAGTGAGTAGAATTCTTCTATGACTCATCACCCAAAGTTCTAGACTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTGAGTAGAATTCTTCTATGACTCATCACCCAAAGTTCTAGACTG  941

seq1  CAGGGATAAATAGGAGACAGGAATCATGTCTTCACTCTCTACACAACTGA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATAAATAGGAGACAGGAATCATGTCTTCACTCTCTACACAACTGA  991

seq1  GAAACTCATTTTTTTTTTAACCGAATTCCCCACCTAGAGTGGAGTTTAAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCATTTTTTTTTTAACCGAATTCCCCACCTAGAGTGGAGTTTAAT  1041

seq1  TCATGTCTGAGAGGATGTGGGGTTTTGGGCTGGTAAGAGAAAAGAGAAGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTGAGAGGATGTGGGGTTTTGGGCTGGTAAGAGAAAAGAGAAGT  1091

seq1  GCTGGCATTGTTACTAACTTATCAAACTTCTAGAGGAGGGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCATTGTTACTAACTTATCAAACTTCTAGAGGAGGGAATTC  1136

seq1: chr9_27014033_27015092
seq2: B6Ng01-120J21.g_69_1133

seq1  GAATTCAGGAGGATGTGGGTTTCAGGAGCATGATGTGGAAAACTGAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGGATGTGGGTTTCAGGAGCATGATGTGGAAAACTGAAGAT  50

seq1  GCTCCTCTGATGCTTCTCTGTGGTCCCTATGACAGGGCTGGGGCTACATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCTGATGCTTCTCTGTGGTCCCTATGACAGGGCTGGGGCTACATC  100

seq1  TTACATATAATGCTCCATCTCAAGCCAGGGCAGTGCCATCTCATGCCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATAATGCTCCATCTCAAGCCAGGGCAGTGCCATCTCATGCCCTA  150

seq1  AGGGAAGCCCTCATTGTTTCCAGCTTCTTTATTTTAAGAGATAAACCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCCCTCATTGTTTCCAGCTTCTTTATTTTAAGAGATAAACCTGA  200

seq1  CCGGTAAGAAGAAGGAAGATTAGATCTTGTATAATTACCAGAGTGCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTAAGAAGAAGGAAGATTAGATCTTGTATAATTACCAGAGTGCCACA  250

seq1  TATTATAATGGATGTGACACACAAATGGAGAAAATTAGGGATGTCACTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATAATGGATGTGACACACAAATGGAGAAAATTAGGGATGTCACTTC  300

seq1  TTCAGGAACACACAGTGACAAGTTCATATTCCTGGGACACAGATGCAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAACACACAGTGACAAGTTCATATTCCTGGGACACAGATGCAGAT  350

seq1  GTTCACAACTCCCATGAAGATCACCACTGAGGGTGACACTGCCCAGGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAACTCCCATGAAGATCACCACTGAGGGTGACACTGCCCAGGGAG  400

seq1  TCTGGGTGCATCCTGAGCTGTTCCTTCTGTGGTCCCTGCTCTTTGCTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTGCATCCTGAGCTGTTCCTTCTGTGGTCCCTGCTCTTTGCTGTT  450

seq1  GCTGTCGTTCATGCCATCTTGACCACCAGATTAGTCAAGGTTCTGCTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCGTTCATGCCATCTTGACCACCAGATTAGTCAAGGTTCTGCTGAC  500

seq1  TTGCTGTGATCTCGACTCCTATTCTTCAGGTCCAAAATATTCATGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTGATCTCGACTCCTATTCTTCAGGTCCAAAATATTCATGCAGAG  550

seq1  TCTCATCTTATACTGTGTATTATGAAATTGGGGAAACCCAAGATAGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTTATACTGTGTATTATGAAATTGGGGAAACCCAAGATAGTTTG  600

seq1  TATTAGGGGCATTCCTTAGGAGTATTGAGTGCAGGCTTATCAGAATTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGGGGCATTCCTTAGGAGTATTGAGTGCAGGCTTATCAGAATTCTT  650

seq1  TCCTGCAATGTACATCTGGAGCATACTGGTCATGAGAACTTTGACAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAATGTACATCTGGAGCATACTGGTCATGAGAACTTTGACAGTTG  700

seq1  GGTAGACAACCAGCAGAGTGAGTAGCCAACGAACCATTATCTTTTCTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGACAACCAGCAGAGTGAGTAGCCAACGAACCATTATCTTTTCTGCA  750

seq1  GAGATCATTAGAAACAAGGTGTTGGCTCTTACCTCTACTTAGAGGCATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCATTAGAAACAAGGTGTTGGCTCTTACCTCTACTTAGAGGCATGC  800

seq1  CCTTCCCCAGCAGGAG-AAGACTGGTGGCCCTTTCAGCATTTTTTTCAGC  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTTCCCCAGCAGGAGAAAGACTGGTGGCCCTTTCAGCATTTTTTTCAGC  850

seq1  TCTAAGCAGTCCAGTACTTCTTCCTAAGGTTGTTTCCTCATGTAGTCTTT  899
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTAAGCAGTCCAGTACTTCTTCCTAAAGTTGTTTCCTCATGTAGTCTTT  900

seq1  GGTTCCTATTGGCTGCAG-AGCAGCAAACATCTCTATCACGGGACACTTC  948
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGTTCCTATTGGCTGCAGAAGCAGCAAACATCTCTATCACGGGACACTTC  950

seq1  CTCTTCACTTAACATTTGGGGGTTGCAGCCCTTTGCTGTTCATTGCATGG  998
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCTTCACTTAACATTT-GGGGTTGCAGCCCTTTGCTGTTCATTGCATGG  999

seq1  -ACAACAGCAATCAGCATGTAGATTGAGTTGCTAAGA--TAAGAAGTACA  1045
       |||||||| ||||||||||||| ||||||||  |||   ||||||||||
seq2  AACAACAGCCATCAGCATGTAGAATGAGTTGCCTAGAATAAAGAAGTACA  1049

seq1  TTATAGA-GCTGAGTT  1060
      ||||||| ||||||||
seq2  TTATAGAGGCTGAGTT  1065