BAC Information

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BAC

Clone NameB6Ng01-121J02
Chromosome9 (Build37)
Map Location 92,863,838 - 92,961,517
singlet/doubletdoublet
Overlap geneLOC100040114
Upstream geneLOC331000, Plscr1, Plscr2, 1700057G04Rik, LOC666850, Plscr4, Plod2, LOC100039921, LOC100039931, LOC100039944, LOC667009
Downstream geneLOC674371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121J02.bB6Ng01-121J02.g
ACCDH925218DH925219
length1,097767
definitionDH925218|Mus musculus domesticus DNA, BAC clone: B6Ng01-121J02, 5' end.DH925219|Mus musculus domesticus DNA, BAC clone: B6Ng01-121J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,960,426 - 92,961,517)(92,863,838 - 92,864,604)
sequence
gaattcagtctgcagtggagaacagctgaattctgagcaatcacagttcc
tgtaggatgctgcatgtcatgtcattcaaagacttcttggagtccacatt
gagtgatgatagggctatttattctctatctgagctgacaattgagagct
aaccttttctctgaggaaaaacacatcccctaaacaaagcaaacatgctt
aagagtggattatattacaataaaataaagacccattctagtcttaaaat
tttaacaagagaaataaaatgaaagaaaagctgccataaggtatatatta
tgatattcgttaccatggtacaaggtaaactacatgctattacaaaacaa
aatccaatttactgcctggcaccttcaattctggcttgacaagtgcttat
ttccttcctatttcggcttcctcattcttattttccagtaggtactgtaa
tgcctccttgaagcaaatcaaacaatctttccatttaatccacagaaaat
gttggtgtgcattggtgtttactaggttcaaatacacaaaaagccaattc
tatcattagaaatctcctaggcagtcttggatgtattattaagttttaga
atgactgattacatcttcatttgtatgaaaaacaaccatgttcacaacaa
ccattttgtaccttagaatttatccaaataaaatactactttgtcatgtt
aaataattaatatgctcaaataatttaacactatataatagcactttttc
tggaactgttagatatttctgttcatttccattgtttgtgagagagagag
agagagagagagagagagagagagtttcatttgtttatttgtttggggtt
gttaatttgttttcatttagaaaggagatttcatttctttaatgtttctt
tatttttcttttttattagggattttcttcattacatttccaatgctatt
cccaaaagtcccccacgtgcccatccacccactcccatttcttgggccct
ggcattcccttgtactaaggcatataagattgcatgaccaatggggctcc
tcctttcccacttatgggccgactaaggccattttctgaatacatat
gaattcattgatagttggtgctaaggcaataacagcttctgtcagatcca
ggtaacttcatttgacaggagtaatgtttctactttgtcttcatttagga
cagctctgcttcggtgactgggtaacttgacgaagatctatctataacag
ccagcatgtcaatgtgctttaccagaggaatcctggggtgaaactaacaa
ttttttttctttgcaaaaatggaaaataaagtttcacaagtaattccctt
atagctatatactatgatgatatttattatattacttttgataaatcata
atggaaactaggaagaatattaaaaatatgtttaagtaaaaaggaccttt
gagttaatgaatcctttgttttaaaattatctatcaaagacacgtgtgat
ggtgcaatggttatatgcctataagggaatacccccagaccaagtaggta
tttgtagatttccacaaacacctgagactaaacagatggagtctacattg
aaaatgtcattggatgaaaaaaaagtattacattgatttaattctggaga
tattaaattctctgatgacttcctaattttttgaaaaaatatataagata
aggctacaatatgacaaatcaaacatgttcaggagatggtattcatgttt
cctttcccaggtgttatttatgtgagtttgaaaaaattattgaattgata
agaacagtttgttttcaaaataatttgaagccaatagtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_92960426_92961517
seq2: B6Ng01-121J02.b_46_1142 (reverse)

seq1  ATATGTA-TCAGAAAATGGCC-TAGTCGG-CCATAAGTGGAAAGAGAGG-  46
      ||||||| ||||||||||||| ||||||| |||||||||| ||  |||| 
seq2  ATATGTATTCAGAAAATGGCCTTAGTCGGCCCATAAGTGGGAAAGGAGGA  50

seq1  --CCCATTGGTCATGCAAACTTTATATGCCTTAGTACAGGGGAATGCCAG  94
        |||||||||||||||| | ||||||||||||||||| |||||||||||
seq2  GCCCCATTGGTCATGCAATC-TTATATGCCTTAGTACAAGGGAATGCCAG  99

seq1  GG-CCAAGAAATGGGAGTGGGTGGATGGGGCAGTGGGGGACTTTTGGG-A  142
      || ||||||||||||||||||||||||||   |||||||||||||||| |
seq2  GGCCCAAGAAATGGGAGTGGGTGGATGGGCACGTGGGGGACTTTTGGGAA  149

seq1  TAGCATTGGAAATGTAAATGAAGAAAATACCTAATAAAAAAAGAAAAATA  192
      ||||||||||||||| |||||||||||| |||||| ||||||||||||||
seq2  TAGCATTGGAAATGT-AATGAAGAAAATCCCTAAT-AAAAAAGAAAAATA  197

seq1  AAGAAACA-TAAAGAAATGAAAATCT-CTTTCTAAAATGAAAACAAATTA  240
      |||||||| |||||||||| |||||| |||||| ||||||||||||||||
seq2  AAGAAACATTAAAGAAATG-AAATCTCCTTTCT-AAATGAAAACAAATTA  245

seq1  ACAACCCCAAACAAATAAACAAATGAAACTCTCTCTCTCTCTCTCTCTCT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCCCAAACAAATAAACAAATGAAACTCTCTCTCTCTCTCTCTCTCT  295

seq1  CTCTCTCTCTCTCACAAACAATGGAAATGAACAGAAATATCTAACAGTTC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCACAAACAATGGAAATGAACAGAAATATCTAACAGTTC  345

seq1  CAGAAAAAGTGCTATTATATAGTGTTAAATTATTTGAGCATATTAATTAT  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAGTGCTATTATATAGTGTTAAATTATTTGAGCATATTAATTAT  395

seq1  TTAACATGACAAAGTAGTATTTTATTTGGATAAATTCTAAGGTACAAAAT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATGACAAAGTAGTATTTTATTTGGATAAATTCTAAGGTACAAAAT  445

seq1  GGTTGTTGTGAACATGGTTGTTTTTCATACAAATGAAGATGTAATCAGTC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTGTGAACATGGTTGTTTTTCATACAAATGAAGATGTAATCAGTC  495

seq1  ATTCTAAAACTTAATAATACATCCAAGACTGCCTAGGAGATTTCTAATGA  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAACTTAATAATACATCCAAGACTGCCTAGGAGATTTCTAATGA  545

seq1  TAGAATTGGCTTTTTGTGTATTTGAACCTAGTAAACACCAATGCACACCA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTGGCTTTTTGTGTATTTGAACCTAGTAAACACCAATGCACACCA  595

seq1  ACATTTTCTGTGGATTAAATGGAAAGATTGTTTGATTTGCTTCAAGGAGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCTGTGGATTAAATGGAAAGATTGTTTGATTTGCTTCAAGGAGG  645

seq1  CATTACAGTACCTACTGGAAAATAAGAATGAGGAAGCCGAAATAGGAAGG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACAGTACCTACTGGAAAATAAGAATGAGGAAGCCGAAATAGGAAGG  695

seq1  AAATAAGCACTTGTCAAGCCAGAATTGAAGGTGCCAGGCAGTAAATTGGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCACTTGTCAAGCCAGAATTGAAGGTGCCAGGCAGTAAATTGGA  745

seq1  TTTTGTTTTGTAATAGCATGTAGTTTACCTTGTACCATGGTAACGAATAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTAATAGCATGTAGTTTACCTTGTACCATGGTAACGAATAT  795

seq1  CATAATATATACCTTATGGCAGCTTTTCTTTCATTTTATTTCTCTTGTTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATATACCTTATGGCAGCTTTTCTTTCATTTTATTTCTCTTGTTA  845

seq1  AAATTTTAAGACTAGAATGGGTCTTTATTTTATTGTAATATAATCCACTC  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTAAGACTAGAATGGGTCTTTATTTTATTGTAATATAATCCACTC  895

seq1  TTAAGCATGTTTGCTTTGTTTAGGGGATGTGTTTTTCCTCAGAGAAAAGG  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCATGTTTGCTTTGTTTAGGGGATGTGTTTTTCCTCAGAGAAAAGG  945

seq1  TTAGCTCTCAATTGTCAGCTCAGATAGAGAATAAATAGCCCTATCATCAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTCTCAATTGTCAGCTCAGATAGAGAATAAATAGCCCTATCATCAC  995

seq1  TCAATGTGGACTCCAAGAAGTCTTTGAATGACATGACATGCAGCATCCTA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGGACTCCAAGAAGTCTTTGAATGACATGACATGCAGCATCCTA  1045

seq1  CAGGAACTGTGATTGCTCAGAATTCAGCTGTTCTCCACTGCAGACTGAAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACTGTGATTGCTCAGAATTCAGCTGTTCTCCACTGCAGACTGAAT  1095

seq1  TC  1092
      ||
seq2  TC  1097

seq1: chr9_92863838_92864604
seq2: B6Ng01-121J02.g_70_836

seq1  GAATTCATTGATAGTTGGTGCTAAGGCAATAACAGCTTCTGTCAGATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGATAGTTGGTGCTAAGGCAATAACAGCTTCTGTCAGATCCA  50

seq1  GGTAACTTCATTTGACAGGAGTAATGTTTCTACTTTGTCTTCATTTAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTTCATTTGACAGGAGTAATGTTTCTACTTTGTCTTCATTTAGGA  100

seq1  CAGCTCTGCTTCGGTGACTGGGTAACTTGACGAAGATCTATCTATAACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTGCTTCGGTGACTGGGTAACTTGACGAAGATCTATCTATAACAG  150

seq1  CCAGCATGTCAATGTGCTTTACCAGAGGAATCCTGGGGTGAAACTAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATGTCAATGTGCTTTACCAGAGGAATCCTGGGGTGAAACTAACAA  200

seq1  TTTTTTTTCTTTGCAAAAATGGAAAATAAAGTTTCACAAGTAATTCCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCTTTGCAAAAATGGAAAATAAAGTTTCACAAGTAATTCCCTT  250

seq1  ATAGCTATATACTATGATGATATTTATTATATTACTTTTGATAAATCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTATATACTATGATGATATTTATTATATTACTTTTGATAAATCATA  300

seq1  ATGGAAACTAGGAAGAATATTAAAAATATGTTTAAGTAAAAAGGACCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAACTAGGAAGAATATTAAAAATATGTTTAAGTAAAAAGGACCTTT  350

seq1  GAGTTAATGAATCCTTTGTTTTAAAATTATCTATCAAAGACACGTGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATGAATCCTTTGTTTTAAAATTATCTATCAAAGACACGTGTGAT  400

seq1  GGTGCAATGGTTATATGCCTATAAGGGAATACCCCCAGACCAAGTAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAATGGTTATATGCCTATAAGGGAATACCCCCAGACCAAGTAGGTA  450

seq1  TTTGTAGATTTCCACAAACACCTGAGACTAAACAGATGGAGTCTACATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAGATTTCCACAAACACCTGAGACTAAACAGATGGAGTCTACATTG  500

seq1  AAAATGTCATTGGATGAAAAAAAAGTATTACATTGATTTAATTCTGGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCATTGGATGAAAAAAAAGTATTACATTGATTTAATTCTGGAGA  550

seq1  TATTAAATTCTCTGATGACTTCCTAATTTTTTGAAAAAATATATAAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATTCTCTGATGACTTCCTAATTTTTTGAAAAAATATATAAGATA  600

seq1  AGGCTACAATATGACAAATCAAACATGTTCAGGAGATGGTATTCATGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACAATATGACAAATCAAACATGTTCAGGAGATGGTATTCATGTTT  650

seq1  CCTTTCCCAGGTGTTATTTATGTGAGTTTGAAAAAATTATTGAATTGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCCAGGTGTTATTTATGTGAGTTTGAAAAAATTATTGAATTGATA  700

seq1  AGAACAGTTTGTTTTCAAAATAATTTGAAGCCAATAGTGTGTGTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGTTTGTTTTCAAAATAATTTGAAGCCAATAGTGTGTGTGTGTGT  750

seq1  GTGTGTGTGTGTGTGTG  767
      |||||||||||||||||
seq2  GTGTGTGTGTGTGTGTG  767