BAC Information

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BAC

Clone NameB6Ng01-122P04
Chromosome9 (Build37)
Map Location 108,157,335 - 108,290,403
singlet/doubletdoublet
Overlap geneDag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859
Upstream geneMapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108
Downstream gene1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14, LOC668758, EG382156
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122P04.bB6Ng01-122P04.g
ACCDH926246DH926247
length738977
definitionDH926246|Mus musculus domesticus DNA, BAC clone: B6Ng01-122P04, 5' end.DH926247|Mus musculus domesticus DNA, BAC clone: B6Ng01-122P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,157,335 - 108,158,072)(108,289,846 - 108,290,403)
sequence
gaattctctcaaagaactacaccatccgcctccctattcatatttaaaac
aaaaaacaaaaacaggatactagagggaatgatctgctgaatatttttca
ctttctttttccttcttcctttttggggggttgttttgaacaaagtctca
gttggtaacccagggagcttagaatgcactaagtagctcaggtttgtttt
aaactttaggataactttcctgcctttagtactgagattataggcttgag
caaatatacctgtctccagctgaattttggtttttagagatttacttttt
tttttgcatttatttttatttatatgtatgggtgttttgcctgcatatat
atgtctgttcacaatgtgtgtgtattgcccacaaaggctagacgagggca
atgggtcctctggaactggagttaaaaatatttgttggtggagctggaga
gatggttcagtgggtaaaagcagtgactgctcttcccaaggtctcaagtt
caaatcccagcaactacatggtggctcacaaccaccggtaatgagatgcg
acaccctcttctggtgtgtttgaagacagctacagtgtactcatatacat
aaaataaataaatctttaaaaaaaaaatacttgttggctgcatgtgggtt
ctgagaactgacctgggttcccaagtgctctaaaccatttagccacctcc
ccataactgtcagtaaagtttggggggagggggtttgt
gaattcagcatctgcacgcgaaggctgagactaaccacagtgcgaacaag
gccataggaatttaaatgtcagacaggccctggaaacctttactgtattt
tgaaattttcttttgttaagtttcaaacctgaggcaagccactgacatga
ctggtatctattgatttttcatggtcaatgcaagcctctaggtcccttta
gtcctttctcaagggcccatttaaccctgaaaattgcacggcagtctaga
ataaatgttttgcctgttcacccagggagtggctgttgcggcttcttccc
tgtgcccacggcagggtcagggaagctcccagcctccctgtggaccttaa
ctaggattaaaagttttatagggctttaatttaaaaattgtaaattttaa
ggcttaacctaaatggataaagctgcaaaatagtgaccttacataaacta
acagttaagaataattaagacatgcaagttcatggtcagtcaccttataa
atgatcaaattctttaatgtgttcagaagtatacttgtaatcatgctaag
tactacagtaattataggaataaggttcctgcatgttttcaaagttaagc
agaaaacaagtgaccagagacagagtgtgtttgtttaggtacagttaaca
ggtggtcctcaaacacttcagagatctgcagaatatggtatttaaaatgt
ttaataagaaaagtttttcatgacagagagacaagtcggctcctagcatc
ctcccaagaagataatgggcacagaagaccatccccccaggcttactcta
aatgcagcaaagcagccactgggccaaacactgcccttcaccttgactgt
tcacagcagtgtccaaactgtggacaagcaggtcactgaggagtcgactc
cctctttgcctagacagtaggccagttcccccaagctcctactgtatagg
aaagtctgtcagaccgtctatgcctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108157335_108158072
seq2: B6Ng01-122P04.b_48_785

seq1  GAATTCTCTCAAAGAACTACACCATCCGCCTCCCTATTCATATTTAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCAAAGAACTACACCATCCGCCTCCCTATTCATATTTAAAAC  50

seq1  AAAAAACAAAAACAGGATACTAGAGGGAATGATCTGCTGAATATTTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAAACAGGATACTAGAGGGAATGATCTGCTGAATATTTTTCA  100

seq1  CTTTCTTTTTCCTTCTTCCTTTTTGGGGGGTTGTTTTGAACAAAGTCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTCCTTCTTCCTTTTTGGGGGGTTGTTTTGAACAAAGTCTCA  150

seq1  GTTGGTAACCCAGGGAGCTTAGAATGCACTAAGTAGCTCAGGTTTGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAACCCAGGGAGCTTAGAATGCACTAAGTAGCTCAGGTTTGTTTT  200

seq1  AAACTTTAGGATAACTTTCCTGCCTTTAGTACTGAGATTATAGGCTTGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTAGGATAACTTTCCTGCCTTTAGTACTGAGATTATAGGCTTGAG  250

seq1  CAAATATACCTGTCTCCAGCTGAATTTTGGTTTTTAGAGATTTACTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATACCTGTCTCCAGCTGAATTTTGGTTTTTAGAGATTTACTTTTT  300

seq1  TTTTTGCATTTATTTTTATTTATATGTATGGGTGTTTTGCCTGCATATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCATTTATTTTTATTTATATGTATGGGTGTTTTGCCTGCATATAT  350

seq1  ATGTCTGTTCACAATGTGTGTGTATTGCCCACAAAGGCTAGACGAGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTTCACAATGTGTGTGTATTGCCCACAAAGGCTAGACGAGGGCA  400

seq1  ATGGGTCCTCTGGAACTGGAGTTAAAAATATTTGTTGGTGGAGCTGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCCTCTGGAACTGGAGTTAAAAATATTTGTTGGTGGAGCTGGAGA  450

seq1  GATGGTTCAGTGGGTAAAAGCAGTGACTGCTCTTCCCAAGGTCTCAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTCAGTGGGTAAAAGCAGTGACTGCTCTTCCCAAGGTCTCAAGTT  500

seq1  CAAATCCCAGCAACTACATGGTGGCTCACAACCACCGGTAATGAGATGCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCCAGCAACTACATGGTGGCTCACAACCACCGGTAATGAGATGCG  550

seq1  ACACCCTCTTCTGGTGTGTTTGAAGACAGCTACAGTGTACTCATATACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTCTTCTGGTGTGTTTGAAGACAGCTACAGTGTACTCATATACAT  600

seq1  AAAATAAATAAATCTTTAAAAAAAAAATACTTGTTGGCTGCATGTGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATAAATCTTTAAAAAAAAAATACTTGTTGGCTGCATGTGGGTT  650

seq1  CTGAGAACTGACCTGGGTTCCCAAGTGCTCTAAACCATTTAGCCACCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACTGACCTGGGTTCCCAAGTGCTCTAAACCATTTAGCCACCTCC  700

seq1  CCATAACTGTCAGTAAAGTTTGGGGGGAGGGGGTTTGT  738
      ||||||||||||||||||||||||||||||||||||||
seq2  CCATAACTGTCAGTAAAGTTTGGGGGGAGGGGGTTTGT  738

seq1: chr9_108289846_108290403
seq2: B6Ng01-122P04.g_67_624 (reverse)

seq1  CTGTAGTACTTAGCATGATTACAAGTATACTTCTGAACACATTAAAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTACTTAGCATGATTACAAGTATACTTCTGAACACATTAAAGAAT  50

seq1  TTGATCATTTATAAGGTGACTGACCATGAACTTGCATGTCTTAATTATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCATTTATAAGGTGACTGACCATGAACTTGCATGTCTTAATTATTC  100

seq1  TTAACTGTTAGTTTATGTAAGGTCACTATTTTGCAGCTTTATCCATTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGTTAGTTTATGTAAGGTCACTATTTTGCAGCTTTATCCATTTAG  150

seq1  GTTAAGCCTTAAAATTTACAATTTTTAAATTAAAGCCCTATAAAACTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCCTTAAAATTTACAATTTTTAAATTAAAGCCCTATAAAACTTTT  200

seq1  AATCCTAGTTAAGGTCCACAGGGAGGCTGGGAGCTTCCCTGACCCTGCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAGTTAAGGTCCACAGGGAGGCTGGGAGCTTCCCTGACCCTGCCG  250

seq1  TGGGCACAGGGAAGAAGCCGCAACAGCCACTCCCTGGGTGAACAGGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACAGGGAAGAAGCCGCAACAGCCACTCCCTGGGTGAACAGGCAAA  300

seq1  ACATTTATTCTAGACTGCCGTGCAATTTTCAGGGTTAAATGGGCCCTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATTCTAGACTGCCGTGCAATTTTCAGGGTTAAATGGGCCCTTGA  350

seq1  GAAAGGACTAAAGGGACCTAGAGGCTTGCATTGACCATGAAAAATCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGACTAAAGGGACCTAGAGGCTTGCATTGACCATGAAAAATCAATA  400

seq1  GATACCAGTCATGTCAGTGGCTTGCCTCAGGTTTGAAACTTAACAAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACCAGTCATGTCAGTGGCTTGCCTCAGGTTTGAAACTTAACAAAAGA  450

seq1  AAATTTCAAAATACAGTAAAGGTTTCCAGGGCCTGTCTGACATTTAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCAAAATACAGTAAAGGTTTCCAGGGCCTGTCTGACATTTAAATT  500

seq1  CCTATGGCCTTGTTCGCACTGTGGTTAGTCTCAGCCTTCGCGTGCAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGCCTTGTTCGCACTGTGGTTAGTCTCAGCCTTCGCGTGCAGATG  550

seq1  CTGAATTC  558
      ||||||||
seq2  CTGAATTC  558