BAC Information

Click to search

BAC

Clone NameB6Ng01-123K06
Chromosome9 (Build37)
Map Location 11,407,264 - 11,408,276
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665178
Downstream geneLOC100039989, LOC622505
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123K06.bB6Ng01-123K06.g
ACCDH926752DH926753
length1,002884
definitionDH926752|Mus musculus domesticus DNA, BAC clone: B6Ng01-123K06, 5' end.DH926753|Mus musculus domesticus DNA, BAC clone: B6Ng01-123K06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcaatctgatatcacttatatgtaaagaggagtgtagaggttt
ccatttctcttttataactttgtaaaatgcttaaagcaattttcattttt
ttctaaaatgtcttatacacactgtcactatctgcatattagctttacag
tattttaagcaacttagcactttgaaatatgatgtggatctaaaccacaa
tacacacttatataatgagagcctacatttttaaagaagagccgaggctt
cttagatcaaataggattcattaaaggttatggggttgtaagtagttgca
cacatcatgatagccacctacttaggtgatgctgtgtctggcttgttggg
aaaagatagagaatagctcacaaaaaacactgcaaaagccataatttggg
acatgtatgtcttttgagaacatacatcagtcaaagctacagtttctggc
ggcacttggatgataaggttataaaaatgtcaccaaagtacatagttaat
atattttcaaagtcctgatccaaggattctgagatgtatagaatttgtgt
tgttttaaaatgctatgctggtggtaataaccatagtaatgtgcttctac
tgatcatgtgaaacaatgcttctctctgcttcgctgaagaaatcacaggg
acaaatttccagtctctagtctgtacttcattcctgtatttcatttagac
catccagagactgctccacctggggatccatcccatatacagacaccaaa
cctagacactatagtgtggtaactaaaaagtgggtcctggggaagaggag
gaaggggggaaggcccacgcccttgccagagttccacctattctctggtc
aggtgggcatgagagggctggcacactcttcccactcagccctgggatgg
gtcatcaagcctctgtcccactcttcggtgatggacagggcagcccaaac
tgggagccccggggctactctctaaagtctgggtatgggaaaaaggaatg
ag

gaattctctgtaagttcaaagtcagtgtggtctatagagtaaattctagg
gcagccaaggcatagagaaaccctgtattgaaacaaacaaacaaacaaac
aaacaaaagcaaagcaaagcaaaacaaaacaaagcaaagcaaagcaaagc
aaagcaaagcaaagcaaagcaaagcaaaacaaaacaaaacaaaacaaaac
aaaacaaaacaaaacgaaacaaaacgaaaaagagaaaaaggattcaagaa
gtcaagaactcagaagctccgggaaggttcttaactgaaaagatgcaaag
acccctgccttcctaagcttgtaaaacagtaatgactgatgaggagtccc
tgtgcagctgaactgctagaagagacactttccaaactactgagctgtgt
gaaactatgcagcaacattcagagttcgtttggtgatgtagatgtcattt
taatcatttctgctcctgcaagtaaccctcatccatactcctctagtagt
caataggacttgatagcatcctgtttggtgttcattgattcctaatgcga
gtgagaactgaagctgtacatcactccagagcagtgtcagatataaccta
acttcatattcatatattgttacttgctgaataatgtagccatgatctgt
gctctgcactatgtgacacatgtgatgtctaatccatctgctctgtgctc
agacagtgatgacatgtgagctgcacaacatgatgctactcgtgctgcag
acatgtgagtcatgatattgctgctgctagtctatgcagagtcttcagtg
tcatgactgcgactcatactgaatgagctcagactgatgacttctaatga
gtaggacgatcatctaggagtatcgaagctatcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_11407264_11408276
seq2: B6Ng01-123K06.b_49_1050

seq1  GAATTCTTCAATCTGATATCACTTATATGTAAAGAGGAGTGTAGAGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAATCTGATATCACTTATATGTAAAGAGGAGTGTAGAGGTTT  50

seq1  CCATTTCTCTTTTATAACTTTGTAAAATGCTTAAAGCAATTTTCATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCTCTTTTATAACTTTGTAAAATGCTTAAAGCAATTTTCATTTTT  100

seq1  TTCTAAAATGTCTTATACACACTGTCACTATCTGCATATTAGCTTTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAATGTCTTATACACACTGTCACTATCTGCATATTAGCTTTACAG  150

seq1  TATTTTAAGCAACTTAGCACTTTGAAATATGATGTGGATCTAAACCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAGCAACTTAGCACTTTGAAATATGATGTGGATCTAAACCACAA  200

seq1  TACACACTTATATAATGAGAGCCTACATTTTTAAAGAAGAGCCGAGGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACTTATATAATGAGAGCCTACATTTTTAAAGAAGAGCCGAGGCTT  250

seq1  CTTAGATCAAATAGGATTCATTAAAGGTTATGGGGTTGTAAGTAGTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATCAAATAGGATTCATTAAAGGTTATGGGGTTGTAAGTAGTTGCA  300

seq1  CACATCATGATAGCCACCTACTTAGGTGATGCTGTGTCTGGCTTGTTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCATGATAGCCACCTACTTAGGTGATGCTGTGTCTGGCTTGTTGGG  350

seq1  AAAAGATAGAGAATAGCTCACAAAAAACACTGCAAAAGCCATAATTTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGATAGAGAATAGCTCACAAAAAACACTGCAAAAGCCATAATTTGGG  400

seq1  ACATGTATGTCTTTTGAGAACATACATCAGTCAAAGCTACAGTTTCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGTCTTTTGAGAACATACATCAGTCAAAGCTACAGTTTCTGGC  450

seq1  GGCACTTGGATGATAAGGTTATAAAAATGTCACCAAAGTACATAGTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTTGGATGATAAGGTTATAAAAATGTCACCAAAGTACATAGTTAAT  500

seq1  ATATTTTCAAAGTCCTGATCCAAGGATTCTGAGATGTATAGAATTTGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCAAAGTCCTGATCCAAGGATTCTGAGATGTATAGAATTTGTGT  550

seq1  TGTTTTAAAATGCTATGCTGGTGGTAATAACCATAGTAATGTGCTTCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAAAATGCTATGCTGGTGGTAATAACCATAGTAATGTGCTTCTAC  600

seq1  TGATCATGTGAAACAATGCTTCTCTCTGCTTCGCTGAAGAAATCACAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATGTGAAACAATGCTTCTCTCTGCTTCGCTGAAGAAATCACAGGG  650

seq1  ACAAATTTCCAGTCTCTAGTCTGTACTTCATTCCTGTATTTCATTTAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTCCAGTCTCTAGTCTGTACTTCATTCCTGTATTTCATTTAGAC  700

seq1  CATCCAGAGACTGCTCCACCTGGGGATCCATCCCATATACAGACACCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGAGACTGCTCCACCTGGGGATCCATCCCATATACAGACACCAAA  750

seq1  CCTAGACACTATAGTGTGGTAACTAAAAAGTGGGTCCTGGGGAAGAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGACACTATAGTGTGGTAACTAAAAAGTGGGTCCTGGGGAAGAGGAG  800

seq1  GAAGGGGGGAAGGCCCACGCCC-TGCCAGAGTTCCACCTATTCTCTGGTC  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAGGGGGGAAGGCCCACGCCCTTGCCAGAGTTCCACCTATTCTCTGGTC  850

seq1  AGGTGGGCATGAGAGGGCTGCCACACTCTTCCCACTCAGCCCT-GGAT-G  897
      |||||||||||||||||||| |||||||||||||||||||||| |||| |
seq2  AGGTGGGCATGAGAGGGCTGGCACACTCTTCCCACTCAGCCCTGGGATGG  900

seq1  GTCATCCAAGCCTCTGTCCCACTCTTCGGTGGATGGACAAGGGGCAGCCC  947
      ||||| |||||||||||||||||||||||| ||||||||  |||||||||
seq2  GTCAT-CAAGCCTCTGTCCCACTCTTCGGT-GATGGACA--GGGCAGCCC  946

seq1  AAACTGGGAGCCCCGGGGCTACTCTCTAAAGCTCTGGGGTTATGGGAGAG  997
      ||||||||||||||||||||||||||||||| ||||||  ||||||| | 
seq2  AAACTGGGAGCCCCGGGGCTACTCTCTAAAG-TCTGGG--TATGGGAAAA  993

seq1  AGGGATGAGGAATGAG  1013
      ||| |||||       
seq2  AGGAATGAG-------  1002


| Home | SequenceCutter | Blast | Download |