BAC Information

Click to search

BAC

Clone NameB6Ng01-123N24
Chromosome9 (Build37)
Map Location 28,416,677 - 28,546,106
singlet/doubletdoublet
Overlap geneOpcml
Upstream geneLOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123N24.bB6Ng01-123N24.g
ACCDH926926DH926927
length1,1631,054
definitionDH926926|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N24, 5' end.DH926927|Mus musculus domesticus DNA, BAC clone: B6Ng01-123N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,416,677 - 28,417,855)(28,545,049 - 28,546,106)
sequence
gaattcaaagcaactggagcttctagtttcactggaggctccctcaggta
acagtttcttacaaatcaatcgtctctcaagtttttttctactttgaatg
tgtctccatgccccatgaaagattcttgaggttctacttctaactttcct
tgtacccctcctgttttcctcaagatccattttcaacatcattggttcaa
atgctgtcttaagctgatgaccaccacatgcacctcccaagattagatca
ctctcctgagatgggcttgtgcagttttagaggaatccagatttccactt
ccaaatcctccgaagcctccccatctgtcatttcctctgtaacttctttg
tctatttactgaagtcagtctggttagaacttagggtttgtctctgaatc
ttttcctcacgtgtcacccatgcttgagcagtcattgacaccagtcatgt
ttgctattaaataatattaacattggtttcatcctgtaaacttatccaca
ggtatgatgtgatttcatcatattcagactctgttaccactttctctatc
ctctaataatctccctcctcttttacatcacattgatttattcaataaag
ttttgaaatcattatttttttaaaatttcatattataacttaagtaaggc
ttttgttgtctctcactcgaatttcaaaggaaacgatgtcttttctagga
atcaatccacagacgaaacctccttatctcttttcatatcttggcatgga
ctttcatgattcctcacaaatgcagaccaattctctttgtgtacagaatg
accttactgaaacagtctctgttaccacatgtttagcttctcgggtccct
agcaaattaaaattagttgtttggtgcattggcagtctgacctatgcttt
ggtagccaccctcacggttcactccttctccaccccttatgacccacatc
cctacttatacattgtaagcatagttgcttgtcaatccctaccacttgtt
tgacagttttgttcttctctaattgctcttctagaggtccctgcctgaaa
tcctaaccatttactgcctactcattgcaggaacagttcaaggtcatggt
ttggggaactctgcctattcttgccaggttagatgactgcgatgtctaac
atagcaattcttt
gaattcacaaacagaagccggcttttcagaaacacacatctcagctgagc
ctcctgcacagatgtcagatttctgcagaagcctcccggaggctcagaga
gcctacaatggactatttttagttctgataattaatattggaggagaaag
ggaggaggatgaaaatgtagctccagcaaaaaaggcaattaccatctatc
ccatatattgtcacctatgagatgtgttggtttcaaagaaataataaaga
gaaatgcgcatgaacccattgctttctgtatcacacctcccatgaagtgg
atgtttaattcttccctttctgaattctggaaatagcttggtctcataag
ttaacacttgcagctagggctgtgccagcctgcattttactatgacaaag
actgtgtctgtttcccaatgttgaaaaataagagctcgcttctctcacac
attcccagtgaattgggatcaacaactgtcaaaaagaaagccatggtcag
ggtcctcccattcctcctaactggtcccagagtctcattttaaaccattc
ttccaatcccttaccacttcactcaaatttgtagttcttatgcagatctc
tccattgcccgtcaaatcccttaagaaaagatacttttgtacctattaat
gaaaacccagtccatgatgattcataaaacaacatgacgcctctgttgcc
aggaaactctgggaagggtagtaggaaccaccatagtgccagcaaatgtc
tgtgcagcaagcaccttgctagggctagtctacattagtgctgaagctta
ggagagtggagagctgctacaaggagtgaccagccacagtgaaggtggtt
tatcaagtgaaggtacttgctgcctacaccgatgacttgagtttgattct
cagaacctacgaaggtagaagaaaagccaaatccatttctgttagtgtca
cttgagcaaacacatgttgaccactgtgtctggagagctcccccccaagg
attcctacagcccctaaataaataatcaaactaataatgcaatgggggaa
agaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28416677_28417855
seq2: B6Ng01-123N24.b_49_1211

seq1  GAATTCAAAGCAACTGGAGCTTCTAGTTTCACTGGAGGCTCCCTCAGGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCAACTGGAGCTTCTAGTTTCACTGGAGGCTCCCTCAGGTA  50

seq1  ACAGTTTCTTACAAATCAATCGTCTCTCAAGTTTTTTTCTACTTTGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTCTTACAAATCAATCGTCTCTCAAGTTTTTTTCTACTTTGAATG  100

seq1  TGTCTCCATGCCCCATGAAAGATTCTTGAGGTTCTACTTCTAACTTTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCATGCCCCATGAAAGATTCTTGAGGTTCTACTTCTAACTTTCCT  150

seq1  TGTACCCCTCCTGTTTTCCTCAAGATCCATTTTCAACATCATTGGTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCCTCCTGTTTTCCTCAAGATCCATTTTCAACATCATTGGTTCAA  200

seq1  ATGCTGTCTTAAGCTGATGACCACCACATGCACCTCCCAAGATTAGATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTCTTAAGCTGATGACCACCACATGCACCTCCCAAGATTAGATCA  250

seq1  CTCTCCTGAGATGGGCTTGTGCAGTTTTAGAGGAATCCAGATTTCCACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGAGATGGGCTTGTGCAGTTTTAGAGGAATCCAGATTTCCACTT  300

seq1  CCAAATCCTCCGAAGCCTCCCCATCTGTCATTTCCTCTGTAACTTCTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATCCTCCGAAGCCTCCCCATCTGTCATTTCCTCTGTAACTTCTTTG  350

seq1  TCTATTTACTGAAGTCAGTCTGGTTAGAACTTAGGGTTTGTCTCTGAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTACTGAAGTCAGTCTGGTTAGAACTTAGGGTTTGTCTCTGAATC  400

seq1  TTTTCCTCACGTGTCACCCATGCTTGAGCAGTCATTGACACCAGTCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTCACGTGTCACCCATGCTTGAGCAGTCATTGACACCAGTCATGT  450

seq1  TTGCTATTAAATAATATTAACATTGGTTTCATCCTGTAAACTTATCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATTAAATAATATTAACATTGGTTTCATCCTGTAAACTTATCCACA  500

seq1  GGTATGATGTGATTTCATCATATTCAGACTCTGTTACCACTTTCTCTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGATGTGATTTCATCATATTCAGACTCTGTTACCACTTTCTCTATC  550

seq1  CTCTAATAATCTCCCTCCTCTTTTACATCACATTGATTTATTCAATAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATAATCTCCCTCCTCTTTTACATCACATTGATTTATTCAATAAAG  600

seq1  TTTTGAAATCATTATTTTTTTAAAATTTCATATTATAACTTAAGTAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATCATTATTTTTTTAAAATTTCATATTATAACTTAAGTAAGGC  650

seq1  TTTTGTTGTCTCTCACTCGAATTTCAAAGGAAACGATGTCTTTTCTAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTCTCTCACTCGAATTTCAAAGGAAACGATGTCTTTTCTAGGA  700

seq1  ATCAATCCACAGACGAAACCTCCTTATCTCTTTTCATATCTTGGCATGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATCCACAGACGAAACCTCCTTATCTCTTTTCATATCTTGGCATGGA  750

seq1  CTTTCATGATTCCTCACAAATGCAGACCAATTCTCTTTGTGTACAGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGATTCCTCACAAATGCAGACCAATTCTCTTTGTGTACAGAATG  800

seq1  ACCTTACTGAAACAGTCTCTGTTACCACATGTTTAGCTTCTCGGGTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ACCTTACTGAAACAGTCTCTGTTACCACATGTTTAGCTTCTCGGGTCCCT  850

seq1  AGCAAATTAAAATTAGTTGTTTGGTGCATTTGGCAGTCTGACCTATGCTT  900
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGCAAATTAAAATTAGTTGTTTGGTGCA-TTGGCAGTCTGACCTATGCTT  899

seq1  TGGTAGCCACCCTCACGGTTCACTCCTTCTCCACCCCTTATGACCCACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCCACCCTCACGGTTCACTCCTTCTCCACCCCTTATGACCCACAT  949

seq1  CCCTACTTAATAACATTGTTAAGCATAGTTGCTTGTCAATCCCTA-CACT  999
      |||||||||   |||||| |||||||||||||||||||||||||| ||||
seq2  CCCTACTTA--TACATTG-TAAGCATAGTTGCTTGTCAATCCCTACCACT  996

seq1  TGTTTGACAGTTTTGTTCTTTCTCTAATTGCTCTTTCTAGAAGATCCTGC  1049
      |||||||||||||||||| |||||||||||||| ||||||| |  |||||
seq2  TGTTTGACAGTTTTGTTC-TTCTCTAATTGCTC-TTCTAGAGGTCCCTGC  1044

seq1  CTGAAATTCTAACCATTTAACTGCCTACTCATTTGCAGGAACAAGTTCAA  1099
      ||||||| |||||||||| |||||||||||| |||||||||| ||||| |
seq2  CTGAAATCCTAACCATTT-ACTGCCTACTCA-TTGCAGGAAC-AGTTC-A  1090

seq1  AGGTCATGGTTTTGGGGAACTCTTGCCTTAATCCCTTGTCAGGGTTAGAT  1149
      ||||||||| |||||||||||| |||||  ||  |||| || ||||||||
seq2  AGGTCATGG-TTTGGGGAACTC-TGCCT--AT-TCTTGCCA-GGTTAGAT  1134

seq1  GACCTGCGATGTTCTAACATAGC-ATTCTTT  1179
      || |||||||| ||||||||||| |||||||
seq2  GA-CTGCGATG-TCTAACATAGCAATTCTTT  1163

seq1: chr9_28545049_28546106
seq2: B6Ng01-123N24.g_68_1121 (reverse)

seq1  TTCTTTTCCCCATTGCATTTATTTATTTTTATTTATTTATTTAGTGTTTG  50
      |||||| ||||||||||||   ||| ||| | |||||||||||| |  ||
seq2  TTCTTTCCCCCATTGCATT--ATTAGTTTGA-TTATTTATTTAGGGGCTG  47

seq1  TGTGTATATCTTTGTGTGTGTGCTCT-CAGACACAGGTGTCAACATGTGT  99
      |  |   ||| ||| | | | ||||| |||||||||  ||||||||||| 
seq2  TAGG--AATCCTTGGGGGGGAGCTCTCCAGACACAGTGGTCAACATGTG-  94

seq1  TTTGCTCAAAGTGACACTAACAGAAATGGATTTGGCTTTTCTTCTACC-T  148
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  TTTGCTC-AAGTGACACTAACAGAAATGGATTTGGCTTTTCTTCTACCTT  143

seq1  CGTAGGTTCTGAGAATCAAACTCAAGTCATCGGTGTAGGCAGCAAGTACC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGTTCTGAGAATCAAACTCAAGTCATCGGTGTAGGCAGCAAGTACC  193

seq1  TTCACTTGATAAACCACC-TCACTGTGGCTGGTCACTCCTTGTAGCAGCT  247
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCACTTGATAAACCACCTTCACTGTGGCTGGTCACTCCTTGTAGCAGCT  243

seq1  CTCCACTCTCCTAAGCTTCAGCACTAATGTAGACTAGCCCTAGCAAGGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACTCTCCTAAGCTTCAGCACTAATGTAGACTAGCCCTAGCAAGGTG  293

seq1  CTTGCTGCACAGACATTTGCTGGCACTATGGTGGTTCCTACTACCCTTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCACAGACATTTGCTGGCACTATGGTGGTTCCTACTACCCTTCC  343

seq1  CAGAGTTTCCTGGCAACAGAGGCGTCATGTTGTTTTATGAATCATCATGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTCCTGGCAACAGAGGCGTCATGTTGTTTTATGAATCATCATGG  393

seq1  ACTGGGTTTTCATTAATAGGTACAAAAGTATCTTTTCTTAAGGGATTTGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGTTTTCATTAATAGGTACAAAAGTATCTTTTCTTAAGGGATTTGA  443

seq1  CGGGCAATGGAGAGATCTGCATAAGAACTACAAATTTGAGTGAAGTGGTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAATGGAGAGATCTGCATAAGAACTACAAATTTGAGTGAAGTGGTA  493

seq1  AGGGATTGGAAGAATGGTTTAAAATGAGACTCTGGGACCAGTTAGGAGGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTGGAAGAATGGTTTAAAATGAGACTCTGGGACCAGTTAGGAGGA  543

seq1  ATGGGAGGACCCTGACCATGGCTTTCTTTTTGACAGTTGTTGATCCCAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGAGGACCCTGACCATGGCTTTCTTTTTGACAGTTGTTGATCCCAAT  593

seq1  TCACTGGGAATGTGTGAGAGAAGCGAGCTCTTATTTTTCAACATTGGGAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGAATGTGTGAGAGAAGCGAGCTCTTATTTTTCAACATTGGGAA  643

seq1  ACAGACACAGTCTTTGTCATAGTAAAATGCAGGCTGGCACAGCCCTAGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACACAGTCTTTGTCATAGTAAAATGCAGGCTGGCACAGCCCTAGCT  693

seq1  GCAAGTGTTAACTTATGAGACCAAGCTATTTCCAGAATTCAGAAAGGGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGTTAACTTATGAGACCAAGCTATTTCCAGAATTCAGAAAGGGAA  743

seq1  GAATTAAACATCCACTTCATGGGAGGTGTGATACAGAAAGCAATGGGTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAACATCCACTTCATGGGAGGTGTGATACAGAAAGCAATGGGTTC  793

seq1  ATGCGCATTTCTCTTTATTATTTCTTTGAAACCAACACATCTCATAGGTG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGCATTTCTCTTTATTATTTCTTTGAAACCAACACATCTCATAGGTG  843

seq1  ACAATATATGGGATAGATGGTAATTGCCTTTTTTGCTGGAGCTACATTTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATATGGGATAGATGGTAATTGCCTTTTTTGCTGGAGCTACATTTT  893

seq1  CATCCTCCTCCCTTTCTCCTCCAATATTAATTATCAGAACTAAAAATAGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCCTCCCTTTCTCCTCCAATATTAATTATCAGAACTAAAAATAGT  943

seq1  CCATTGTAGGCTCTCTGAGCCTCCGGGAGGCTTCTGCAGAAATCTGACAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTAGGCTCTCTGAGCCTCCGGGAGGCTTCTGCAGAAATCTGACAT  993

seq1  CTGTGCAGGAGGCTCAGCTGAGATGTGTGTTTCTGAAAAGCCGGCTTCTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGGAGGCTCAGCTGAGATGTGTGTTTCTGAAAAGCCGGCTTCTG  1043

seq1  TTTGTGAATTC  1058
      |||||||||||
seq2  TTTGTGAATTC  1054