BAC Information

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BAC

Clone NameB6Ng01-124C10
Chromosome9 (Build37)
Map Location 58,830,678 - 58,983,519
singlet/doubletdoublet
Overlap geneNeo1, LOC100040186
Upstream geneCyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4
Downstream geneEG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124C10.bB6Ng01-124C10.g
ACCDH927133DH927134
length1,064207
definitionDH927133|Mus musculus domesticus DNA, BAC clone: B6Ng01-124C10, 5' end.DH927134|Mus musculus domesticus DNA, BAC clone: B6Ng01-124C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,830,678 - 58,831,743)(58,983,313 - 58,983,519)
sequence
gaattcattatacatgctatatttatagttgtcctcttgcagacatatga
catggccacactcctattgataaaagttaagcattttactttattaatat
tgaaatctgagatcactctcaggtagagatttaattcctatccccagcca
ggttacaaccaccaaaatggtctttaagcctatctagtcaattaataata
gttttgtagccatggtaacaagtaaatactacctaatagatgaataacaa
ttcatttcagtgaatatacttctagaagccaatcagtgacaagccctgcc
tttaaaagtcagccaaccaacagctgagttgttgcttctaaggctgatac
ttacctgtgtccacctgtgcagccaacacggaaaccggcttgtgattgaa
ataagacctctctcttttaaccaacatgacctcaaaactctgtaggagtg
cagaaggtggctgttctccaagtgactgtcaagaaaagctctcttcgtac
ttaaataagcaaatatccagaattctgttcttatttcaagtactaagttg
tggttccatcatttaaaaccactaagctttttttcctggattagactcta
aggatctgcttgaatactacctcaggtgtggaaaggaaatacgaccaagc
aagtcaggtagagcacattattatgtagtaacagcttctttaattacact
tgcaattacttaggaatacttataaatttatatctataaatgtagataca
tttaatcaaatttaacagaattaattaagcaaattttttacaaatattta
ttggtttctatgtgccccaagattttcattactctcattgagcttacata
ctaataatggaaaaaaaaaagacaaattagacactgtatatgtatcagat
gtattagatactgtatatgacaattatgttgatatattttatggaggaaa
aaggaaaaagcattagaggtgaaaaatagttgtttgaaacagagtttcta
agggactcaatatcattcaaatatcaaagtgacatttgagcactgaagga
aagaagtgatccac
tcagtgcaaatctcacatctgaatcctcagatttttaaggataaggttga
ctgatcctcagtctaaaagttgttattgcatctcagcagatcctggttat
atggtttatgggcccagtgataatctctctctctctctctctctctctct
ctctctctctctctcacactctatctcagggtgtgtgtgtgtgtgaggag
tgcatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_58830678_58831743
seq2: B6Ng01-124C10.b_44_1107

seq1  GAATTCATTATACATGCTATATTTATAGTTGTCCTCTTGCAGACATATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATACATGCTATATTTATAGTTGTCCTCTTGCAGACATATGA  50

seq1  CATGGCCACACTCCTATTGATAAAAGTTAAGCATTTTACTTTATTAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCACACTCCTATTGATAAAAGTTAAGCATTTTACTTTATTAATAT  100

seq1  TGAAATCTGAGATCACTCTCAGGTAGAGATTTAATTCCTATCCCCAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTGAGATCACTCTCAGGTAGAGATTTAATTCCTATCCCCAGCCA  150

seq1  GGTTACAACCACCAAAATGGTCTTTAAGCCTATCTAGTCAATTAATAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAACCACCAAAATGGTCTTTAAGCCTATCTAGTCAATTAATAATA  200

seq1  GTTTTGTAGCCATGGTAACAAGTAAATACTACCTAATAGATGAATAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTAGCCATGGTAACAAGTAAATACTACCTAATAGATGAATAACAA  250

seq1  TTCATTTCAGTGAATATACTTCTAGAAGCCAATCAGTGACAAGCCCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTCAGTGAATATACTTCTAGAAGCCAATCAGTGACAAGCCCTGCC  300

seq1  TTTAAAAGTCAGCCAACCAACAGCTGAGTTGTTGCTTCTAAGGCTGATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAGTCAGCCAACCAACAGCTGAGTTGTTGCTTCTAAGGCTGATAC  350

seq1  TTACCTGTGTCCACCTGTGCAGCCAACACGGAAACCGGCTTGTGATTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGTGTCCACCTGTGCAGCCAACACGGAAACCGGCTTGTGATTGAA  400

seq1  ATAAGACCTCTCTCTTTTAACCAACATGACCTCAAAACTCTGTAGGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGACCTCTCTCTTTTAACCAACATGACCTCAAAACTCTGTAGGAGTG  450

seq1  CAGAAGGTGGCTGTTCTCCAAGTGACTGTCAAGAAAAGCTCTCTTCGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGTGGCTGTTCTCCAAGTGACTGTCAAGAAAAGCTCTCTTCGTAC  500

seq1  TTAAATAAGCAAATATCCAGAATTCTGTTCTTATTTCAAGTACTAAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAAGCAAATATCCAGAATTCTGTTCTTATTTCAAGTACTAAGTTG  550

seq1  TGGTTCCATCATTTAAAACCACTAAGCTTTTTTTCCTGGATTAGACTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCATCATTTAAAACCACTAAGCTTTTTTTCCTGGATTAGACTCTA  600

seq1  AGGATCTGCTTGAATACTACCTCAGGTGTGGAAAGGAAATACGACCAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTGCTTGAATACTACCTCAGGTGTGGAAAGGAAATACGACCAAGC  650

seq1  AAGTCAGGTAGAGCACATTATTATGTAGTAACAGCTTCTTTAATTACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGGTAGAGCACATTATTATGTAGTAACAGCTTCTTTAATTACACT  700

seq1  TGCAATTACTTAGGAATACTTATAAATTTATATCTATAAATGTAGATACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTACTTAGGAATACTTATAAATTTATATCTATAAATGTAGATACA  750

seq1  TTTAATCAAATTTAACAGAATTAATTAAGCAAATTTTTTACAAATATTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCAAATTTAACAGAATTAATTAAGCAAATTTTTTACAAATATTTA  800

seq1  TTGGTTTCTATGTGCCCCAAGATTTTCATTACTCTCATTGAGCTTACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTCTATGTGCCCCAAGATTTTCATTACTCTCATTGAGCTTACATA  850

seq1  CTAATAATGGAAAAAAAAAAGACAAATTAGACACTGTATATGTATCAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAATGGAAAAAAAAAAGACAAATTAGACACTGTATATGTATCAGAT  900

seq1  GTATTAGATACTGTATATGACAATTATGTTGATATATTTTATGGAGGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTAGATACTGTATATGACAATTATGTTGATATATTTTATGGAGGAAA  950

seq1  AAGGAAAAAGCATTAGAGGTGAAAAAATAGTTGTCTGAAACAGAGTATCT  1000
      ||||||||||||||||||||| |||||||||||| ||||||||||| |||
seq2  AAGGAAAAAGCATTAGAGGTG-AAAAATAGTTGTTTGAAACAGAGTTTCT  999

seq1  AAGGGACTCAAATATCATTCAAATATCAAAGTGACATTTGAGCACTGAAG  1050
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACTC-AATATCATTCAAATATCAAAGTGACATTTGAGCACTGAAG  1048

seq1  GAAGAGAGTGATCCAC  1066
      |||   ||||||||||
seq2  GAAAGAAGTGATCCAC  1064

seq1: chr9_58983313_58983519
seq2: B6Ng01-124C10.g_73_279 (reverse)

seq1  ACATGCACTCCTCACACACACACACACACAGAGATAGAGAGAGAGAGAGA  50
      ||||||||||||||||||||||||||| | ||||||||| | ||||||||
seq2  ACATGCACTCCTCACACACACACACACCCTGAGATAGAGTGTGAGAGAGA  50

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTATCACTGGGCCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTATCACTGGGCCCAT  100

seq1  AAACCATATAACCAGGATCTGCTGAGATGCAATAACAACTTTTAGACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCATATAACCAGGATCTGCTGAGATGCAATAACAACTTTTAGACTGA  150

seq1  GGATCAGTCAACCTTATCCTTAAAAATCTGAGGATTCAGATGTGAGATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGTCAACCTTATCCTTAAAAATCTGAGGATTCAGATGTGAGATTT  200

seq1  GCACTGA  207
      |||||||
seq2  GCACTGA  207