BAC Information

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BAC

Clone NameB6Ng01-124M03
Chromosome7 (Build37)9 (Build37)
Map Location 52,995,660 - 52,995,88759,821,242 - 59,821,644
singlet/doubletsingletsinglet
Overlap geneSult2b1
Upstream geneZfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb, Ruvbl2, Gys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4
Downstream geneEG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1, Sergef, Tph1, Saal1, Saa3, Saa4, LOC100040106, Saa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124M03.bB6Ng01-124M03.g
ACCDH927584DH927585
length645120
definitionDH927584|Mus musculus domesticus DNA, BAC clone: B6Ng01-124M03, 5' end.DH927585|Mus musculus domesticus DNA, BAC clone: B6Ng01-124M03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(52,995,660 - 52,995,887)(59,821,242 - 59,821,644)
sequence
gaattcaataccccactctcatcaatggacagatgatagaaacagaaact
aaacagagacccagtgaaactaacagaagttatgaacaaaatatatttaa
cagatatctatagaatatttaatcctaaaacaaaagaatataccttcttc
tcagtacctcatggcatcttctataaaactgaccatataattggtcacaa
aagaggcctcagcagatgcaagaagattgaaataatcccatgcatcctat
cagatcaccaagaactaaggctagacttcaatagcaaaaaaaaaaaaaca
aaaacaaaaaaacaaaacaaaaaaccaaacaacaacaaacaaacaaacaa
acaaacaaacaaaaaaccagaaagcccacttacatatggaagcccacgta
cacttactcaccaggcagtagtggctcattcttcaatcccagcacttggg
aggcagaggcaggtggaattctgagttctaggccagcctggtctacagag
cgagttccaggacagccagggctacacagagaaaccctgcttgaaaaacc
caaaattgaatgaatgaatgaatgaatgaatgaataaataaatagcctac
tcagtgataacttggtcaaagaagaaataaagaatttaaagactt
tcctgccatgtgggtcttgaggattgaactcaggtcatcaggcattgagg
caagcacttttatgctctgatccatttttgcctgcctctagaattttggg
gggtgaggtggggtggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_52995660_52995887
seq2: B6Ng01-124M03.b_350_599

seq1  AAAAAAACAAAACAAAAAAACAA--AACA--AAACAAACTTGTCCTTTTT  46
      ||||||||||||||||||| |||  ||||  ||||||||           
seq2  AAAAAAACAAAACAAAAAACCAAACAACAACAAACAAACAAACAAACAAA  50

seq1  CCAACAGAAA--CTGCAATC---CTTAAACA---AATGCC----------  78
      | |||| |||  | | || |   |||| | |   ||  ||          
seq2  CAAACAAAAAACCAGAAAGCCCACTTACATATGGAAGCCCACGTACACTT  100

seq1  -CTCGCCAGGCAGTGGTGGCGCATGCCTTTAATCCCAGCACTTGGGAGTC  127
       ||| ||||||||| ||||| |||  ||| |||||||||||||||||| |
seq2  ACTCACCAGGCAGTAGTGGCTCAT-TCTTCAATCCCAGCACTTGGGAGGC  149

seq1  AGAGGCAGGTGGATTTCTGAGTTCCAGGCCGGCCTGGTCTACAGAGTGAG  177
      ||||||||||||| |||||||||| ||||| ||||||||||||||| |||
seq2  AGAGGCAGGTGGAATTCTGAGTTCTAGGCCAGCCTGGTCTACAGAGCGAG  199

seq1  TTTCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTTGAAAAAACAAA  227
      || |||||||||||||||||||||||||||||||| ||||||||| | ||
seq2  TTCCAGGACAGCCAGGGCTACACAGAGAAACCCTG-CTTGAAAAACCCAA  248

seq1  A-  228
      | 
seq2  AA  250

seq1: chr9_59821242_59821644
seq2: B6Ng01-124M03.g_94_191

seq1  ATTGAACTCAGGTCCTCTGGAAGAGCAGCCAGTGCTCTTAACTGCTGAGC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CATCTCTCCATCTCCCATCTCTCTTTAACACTGTATGACACCTAAACGTA  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGACATTCATAAACTCTTGGCCACCTTTTTGAAATTGAACTTATACATTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTATATCACTCAGGAGGATAGCCATGTAAATATATAATGTATCCATTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TCCACTGGTAGACATGTTTCCAGTTTTTTTTTTCTGTTATAAATAGTGAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  CTTTTAAACAAAATTTAAAGTGTTC--TTTTTGAGTTTTAAAACACATAC  298
         || |||      | | ||  ||     |||||     || ||| |  
seq2  --ATTGAAC------TCAGGTCATCAGGCATTGAG---GCAAGCACTT--  37

seq1  AGCCTTATTAGATGTGATGGCTGTCCTCCAAACTATGTGAAACTACTTGT  348
          ||||           ||| |  ||||             |  ||| 
seq2  ----TTAT-----------GCTCTGATCCA-------------TTTTTGC  59

seq1  ATTTCTCTTGGCAGAACAGTGGAATCCATTTTGGGGGGTGAGGTGGGGTG  398
       |  ||||    |||            |||||||||||||||||||||||
seq2  CTGCCTCT----AGA------------ATTTTGGGGGGTGAGGTGGGGTG  93

seq1  GGGTG  403
      |||||
seq2  GGGTG  98