BAC Information

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BAC

Clone NameB6Ng01-125G24
Chromosome9 (Build37)
Map Location 115,848,933 - 116,011,999
singlet/doubletdoublet
Overlap geneGadl1, EG668829, Tgfbr2
Upstream geneLOC100043813, Osbpl10, LOC100043812, Stt3b, LOC100039567, LOC670467, EG546164
Downstream geneLOC100043817, LOC100043819, D730003K21Rik, Rbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125G24.bB6Ng01-125G24.g
ACCDH928075DH928076
length1,111950
definitionDH928075|Mus musculus domesticus DNA, BAC clone: B6Ng01-125G24, 5' end.DH928076|Mus musculus domesticus DNA, BAC clone: B6Ng01-125G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,010,889 - 116,011,999)(115,848,933 - 115,849,889)
sequence
gaattccacgttggtttttgctggtgtgttctcatcattagattgaggcg
atgtgtctggaataacaacactacagacactgtggcaacttctgagcaca
tggaaccaagggcgggcttgctgatgtcagctagggagtctggctgtcag
gttctgttctgtagaggtgctattttccagtttgtagggagtaaagacag
aggaatatactctgacttggtcataatctcacctgttaatttgagaatct
actgtaagaattctcactggaaacaattatgactgtgatgtttgccacct
gcaaatgtttctgtttctcttactccttgttaattagcaggcttttcatt
caaaaggaatctctatccttcctcttgctactccttgtcatttacccatt
atttgtgcatttgtatcaaccggagtcaatgggtagttctttcatttgat
ggatgcctcaaaacttccaatacttttttttctgcttaaatagcgacttc
tttcattactaacccaaacttcccaatgtactgtccagggccattccaac
tgggcccattgctggttcggagtctttatttcctgcagaatatggctggc
tacccaaactccaaggagaatctcagtctcctcttcctcatcccttctcg
agtcactgtcttcgatctctctggcttctgtggagacgggtatgctgttc
ctgacaacactggtttctatgactggctttgagagtcgagcttctgtagc
cagcccctgacgttgtctgctctccggtcctattgacagtcagcctaggc
tccagtgaattccgctttcatcataggcacagacaagatcgccttcctgt
tgacagtgctgagtgagggagaattgggcacgtgaggaagagctaagctc
accaacttttatgggctctaaaaaagccacaggataaacaagtttcctcg
tggaaggaagcaggttccactttgttcaactcatcttcagaaaaaccctt
tacattcttcgtggtaaaaacaggcaggaactagatgggaccatcctggc
ctctgctttgctgaatcagaacttcccacttaatgaattctctgtctcac
cctctggctgt
gaattcagtgagggcttgttggtccttcacttggctgcgcagcatcattt
ggcagcatagtcttctttggatgctctttattcttggtttgagccccatc
aaaccgtgctagaaggtctcccttcttccctcgttgtcatcctccctatc
agaggtcatccctgccatgatattctgtaagtgccgtccgatgtcatcca
gggatccctgtggcttctttctgagccgtgagcaccttcccctggggtgt
cctcctaggaagcctagagttctatttctgatccttcccaagagcttgat
aaagcccaccttgatctacccctctctattcactcattcgcttgctccac
acatctccgctgagcctccacttaagtctgatgttcctgctttttcccaa
acacacccttccataaccccttcaccaccgttgaacttgacccagtccct
tctttactgaggagctctgaaatcacgatgatcagtctccatggattaat
gagcttcatctcagccctgtggtggtgactgtgtaggatgtaatgggtga
gtggctagcttggtgatgcctgctatgggaaacagagagcagaaggaagt
agagagggttgccatgcctgggtcatgggcagctggggatgttaactgac
agaagtgtcaatgaatgataatggaacatttcagcaaacatatacaaaag
gaagagcgcgtttattaaataggtggtgagagagggacattccaggcaga
ggacgcaacatgtggagaccccagcagtgtgtgcaacttggtatgtctga
ggaagagaaaaggctagttagccaggagtaggcgtgccaagacgaaaccg
caggcagagaagcagcaccacacaggatgagttatgtctcattacttctc
tacgttgattcttgatgagctgagagtagtgaaggtgttgagcaaaatag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_116010889_116011999
seq2: B6Ng01-125G24.b_48_1158 (reverse)

seq1  ACAGCCAGAGTG-GAGACAGGAGAA-TCA-TGAGTGGGAAGTTCTGATCA  47
      |||||||||| | |||||| ||||| ||| | ||||||||||||||||  
seq2  ACAGCCAGAGGGTGAGACA-GAGAATTCATTAAGTGGGAAGTTCTGATTC  49

seq1  GGCAAAGCAGA-GCCAGGATGGGTCCCATCTAGTTCCTGCCTGTTTTTAC  96
       |||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  AGCAAAGCAGAGGCCAGGAT-GGTCCCATCTAGTTCCTGCCTGTTTTTAC  98

seq1  CACGAAGGATGTAAAGGGTTTTTCTG-AGATGAGTTGAACAAAGTGGAAC  145
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  CACGAAGAATGTAAAGGGTTTTTCTGAAGATGAGTTGAACAAAGTGGAAC  148

seq1  CTGCTTCCTTCCACGAGGAAACTTGTTTATCCTGTGGCTTTTTTTAGAGC  195
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGCTTCCTTCCACGAGGAAACTTGTTTATCCTGTGGC-TTTTTTAGAGC  197

seq1  CCATAAAAGTTGGTGAGCTTAGCTCTTCCTCACGTGCCCCAATTCTCCCT  245
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCATAAAAGTTGGTGAGCTTAGCTCTTCCTCACGTG-CCCAATTCTCCCT  246

seq1  CACTCAGCAACTGTCAACAGGAAGGCGATCTTGTCTGTGCCTATGATGAA  295
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGC-ACTGTCAACAGGAAGGCGATCTTGTCTGTGCCTATGATGAA  295

seq1  AGCGGAATTCACTGGAGCCTAGGCTGACTGTCAATAGGACCGGAGAGCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGAATTCACTGGAGCCTAGGCTGACTGTCAATAGGACCGGAGAGCAG  345

seq1  ACAACGTCAGGGGCTGGCTACAGAAGCTCGACTCTCAAAGCCAGTCATAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGTCAGGGGCTGGCTACAGAAGCTCGACTCTCAAAGCCAGTCATAG  395

seq1  AAACCAGTGTTGTCAGGAACAGCATACCCGTCTCCACAGAAGCCAGAGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTGTTGTCAGGAACAGCATACCCGTCTCCACAGAAGCCAGAGAG  445

seq1  ATCGAAGACAGTGACTCGAGAAGGGATGAGGAAGAGGAGACTGAGATTCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGAAGACAGTGACTCGAGAAGGGATGAGGAAGAGGAGACTGAGATTCT  495

seq1  CCTTGGAGTTTGGGTAGCCAGCCATATTCTGCAGGAAATAAAGACTCCGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAGTTTGGGTAGCCAGCCATATTCTGCAGGAAATAAAGACTCCGA  545

seq1  ACCAGCAATGGGCCCAGTTGGAATGGCCCTGGACAGTACATTGGGAAGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAATGGGCCCAGTTGGAATGGCCCTGGACAGTACATTGGGAAGTT  595

seq1  TGGGTTAGTAATGAAAGAAGTCGCTATTTAAGCAGAAAAAAAAGTATTGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTAGTAATGAAAGAAGTCGCTATTTAAGCAGAAAAAAAAGTATTGG  645

seq1  AAGTTTTGAGGCATCCATCAAATGAAAGAACTACCCATTGACTCCGGTTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTGAGGCATCCATCAAATGAAAGAACTACCCATTGACTCCGGTTG  695

seq1  ATACAAATGCACAAATAATGGGTAAATGACAAGGAGTAGCAAGAGGAAGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATGCACAAATAATGGGTAAATGACAAGGAGTAGCAAGAGGAAGG  745

seq1  ATAGAGATTCCTTTTGAATGAAAAGCCTGCTAATTAACAAGGAGTAAGAG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGATTCCTTTTGAATGAAAAGCCTGCTAATTAACAAGGAGTAAGAG  795

seq1  AAACAGAAACATTTGCAGGTGGCAAACATCACAGTCATAATTGTTTCCAG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAAACATTTGCAGGTGGCAAACATCACAGTCATAATTGTTTCCAG  845

seq1  TGAGAATTCTTACAGTAGATTCTCAAATTAACAGGTGAGATTATGACCAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAATTCTTACAGTAGATTCTCAAATTAACAGGTGAGATTATGACCAA  895

seq1  GTCAGAGTATATTCCTCTGTCTTTACTCCCTACAAACTGGAAAATAGCAC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGAGTATATTCCTCTGTCTTTACTCCCTACAAACTGGAAAATAGCAC  945

seq1  CTCTACAGAACAGAACCTGACAGCCAGACTCCCTAGCTGACATCAGCAAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAGAACAGAACCTGACAGCCAGACTCCCTAGCTGACATCAGCAAG  995

seq1  CCCGCCCTTGGTTCCATGTGCTCAGAAGTTGCCACAGTGTCTGTAGTGTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCCTTGGTTCCATGTGCTCAGAAGTTGCCACAGTGTCTGTAGTGTT  1045

seq1  GTTATTCCAGACACATCGCCTCAATCTAATGATGAGAACACACCAGCAAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCCAGACACATCGCCTCAATCTAATGATGAGAACACACCAGCAAA  1095

seq1  AACCAACGTGGAATTC  1111
      ||||||||||||||||
seq2  AACCAACGTGGAATTC  1111

seq1: chr9_115848933_115849889
seq2: B6Ng01-125G24.g_66_1015

seq1  GAATTCAGTGAGGGCTTGTTGGTCCTTCACTTGGCTGCGCAGCATCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGAGGGCTTGTTGGTCCTTCACTTGGCTGCGCAGCATCATTT  50

seq1  GGCAGCATAGTCTTCTTTGGATGCTCTTTATTCTTGGTTTGAGCCCCATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCATAGTCTTCTTTGGATGCTCTTTATTCTTGGTTTGAGCCCCATC  100

seq1  AAACCGTGCTAGAAGGTCTCCCTTCTTCCCTCGTTGTCATCCTCCCTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCGTGCTAGAAGGTCTCCCTTCTTCCCTCGTTGTCATCCTCCCTATC  150

seq1  AGAGGTCATCCCTGCCATGATATTCTGTAAGTGCCGTCCGATGTCATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCATCCCTGCCATGATATTCTGTAAGTGCCGTCCGATGTCATCCA  200

seq1  GGGATCCCTGTGGCTTCTTTCTGAGCCGTGAGCACCTTCCCCTGGGGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCCCTGTGGCTTCTTTCTGAGCCGTGAGCACCTTCCCCTGGGGTGT  250

seq1  CCTCCTAGGAAGCCTAGAGTTCTATTTCTGATCCTTCCCAAGAGCTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAGGAAGCCTAGAGTTCTATTTCTGATCCTTCCCAAGAGCTTGAT  300

seq1  AAAGCCCACCTTGATCTACCCCTCTCTATTCACTCATTCGCTTGCTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCACCTTGATCTACCCCTCTCTATTCACTCATTCGCTTGCTCCAC  350

seq1  ACATCTCCGCTGAGCCTCCACTTAAGTCTGATGTTCCTGCTTTTTCCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCCGCTGAGCCTCCACTTAAGTCTGATGTTCCTGCTTTTTCCCAA  400

seq1  ACACACCCTTCCATAACCCCTTCACCACCGTTGAACTTGACCCAGTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCCTTCCATAACCCCTTCACCACCGTTGAACTTGACCCAGTCCCT  450

seq1  TCTTTACTGAGGAGCTCTGAAATCACGATGATCAGTCTCCATGGATTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACTGAGGAGCTCTGAAATCACGATGATCAGTCTCCATGGATTAAT  500

seq1  GAGCTTCATCTCAGCCCTGTGGTGGTGACTGTGTAGGATGTAATGGGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCATCTCAGCCCTGTGGTGGTGACTGTGTAGGATGTAATGGGTGA  550

seq1  GTGGCTAGCTTGGTGATGCCTGCTATGGGAAACAGAGAGCAGAAGGAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTAGCTTGGTGATGCCTGCTATGGGAAACAGAGAGCAGAAGGAAGT  600

seq1  AGAGAGGGTTGCCATGCCTGGGTCATGGGCAGCTGGGGATGTTAACTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGTTGCCATGCCTGGGTCATGGGCAGCTGGGGATGTTAACTGAC  650

seq1  AGAAGTGTCAATGAATGATAATGGAAACATTTCAGCAAACATATACAAAA  700
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AGAAGTGTCAATGAATGATAATGG-AACATTTCAGCAAACATATACAAAA  699

seq1  GGAAGAGCGCG-TTATTAAATAGGTGGTGAGAGAGGGACATTCCAGGCAG  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGCGCGTTTATTAAATAGGTGGTGAGAGAGGGACATTCCAGGCAG  749

seq1  AGGACGCAACATGTGGAGACCCCAGCAGTGTGTGCAAACTTGGTATGTCT  799
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGACGCAACATGTGGAGACCCCAGCAGTGTGTGC-AACTTGGTATGTCT  798

seq1  GAGGAAGAG-AGAGGCTAGTTAGCCAGGAGGTAGGCGTGCCAGAGACGAA  848
      ||||||||| | ||||||||||||||||| |||||||||||| |||||||
seq2  GAGGAAGAGAAAAGGCTAGTTAGCCAGGA-GTAGGCGTGCCA-AGACGAA  846

seq1  A-CGCAGGCAGAGAAGCAGCA-CACACAGGATGAGTTTATGTCTCCATAC  896
      | ||||||||||||||||||| ||||||||||||| |||||||||  |||
seq2  ACCGCAGGCAGAGAAGCAGCACCACACAGGATGAG-TTATGTCTCATTAC  895

seq1  TTTCTTCTACGTTGA-TCTTGATGAAGCTGAGGAGTAGGTGAAGGTGTTT  945
      ||   |||||||||| |||||||| |||||| ||||| ||||||||| ||
seq2  TT--CTCTACGTTGATTCTTGATG-AGCTGA-GAGTA-GTGAAGGTG-TT  939

seq1  GAGCAGAAATAG  957
      ||||| ||||||
seq2  GAGCA-AAATAG  950