BAC Information

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BAC

Clone NameB6Ng01-125H08
Chromosome9 (Build37)
Map Location 28,897,793 - 29,037,183
singlet/doubletdoublet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125H08.bB6Ng01-125H08.g
ACCDH928090DH928091
length1,0461,112
definitionDH928090|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H08, 5' end.DH928091|Mus musculus domesticus DNA, BAC clone: B6Ng01-125H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,897,793 - 28,898,834)(29,036,043 - 29,037,183)
sequence
gaattcattcatgtttttcctttccttgcaatgagctcagacacaggttc
ttaagcaacctgtgctgccactcctctgtagatcactgccttgctcaaag
tagcacagcatgggaaaacaaccgggttggaagacagacagaagaaagcc
tctcctgctttaaggcagtgggcaaaggctgaaacttgaatggtgggggt
taggaattaaataaggggaaccaaaaaggacaaatggctgttggaatagc
atgctgatacctcccatttattctttctctttttgataggagtgactggt
ggctgacttgaatcagagcatcttgagtcacactcaagagacattcatga
tatcagatctttaggggttccttcatggaaagtccagagactcagacttg
caagactctgaggcctctatagaccttcatgaggctcttactctacctag
gactccaataagaggtaagcaattatttaggattagaacttttttgaaga
tagtagctatatacttgatagacacagaggaactttcccagtgctgtgtg
tgagtggcctgtgatcctgtaaataatcccaataaactcattgattcaaa
aaactggacttgggtgaaatattttcttcaatttaacagtgtcctgctta
tctaggatgcatagaccttttcatctccagaaaatctaacaaaatatcca
tgtcattccatagagtcatatttggggccatatagtgtgatgtgatatgc
agtaaggcatacacgttactttgttctgaatccgtgtataatcacagact
caggtttagtataaacatattttgaaaggcaggcttctttataaagctac
catcttcccatgtatggactccactataacataagtgaagctctattata
gccatactaacttcatttaggttgttagaggatacaaattgaaatatttt
aaaacgtaaaagttgagtatgggtatgtcatatcacacacacacaaacac
acacacaacttcataaccgtcataggaaggaggaagggggaggggg
gaattccagcacttgggaggcagaggcaggcagatttctgagttcgagga
cagccagggctacacagagaaaccctgtctcaaaaaaaaaaaaaaaaaaa
gtgttagatttccttaatgtaattgtgaactgggatcacaacccagctcc
aggatattgcttcaagtaggatgtagtgccagcatttattctggacttca
tagtcagagcagacatgcaaaaccaaggttcttataaagctgtgctctct
agggtatggcaatggagagacggcccaaggcacatcaatctatttagaaa
tgccctaatcctttggagagagtgtgtgatcttgcatgtgtgctggtcat
atgattgctttgggctttccttccaggcctactcagtttggaagcttggt
gcttaataagttgaactgtccatctgagtggcatttgaagtcagaggagg
ccacggatatgaaatcatctgcccttgcccactggcctcctatcagttgt
gttgtctgtaaccatcaggacacactgcactggtgaccagggtgctttgc
tagtacagtgggctatgtctaaatcatcagaaatattacagaaattattt
ttgtcttttccagtactcaatgtgcctggatttcctttctggtacccaaa
ttatcacatctatgttcttaaatgaatacttgagtacttgagacaactct
acaaaaacaaaaaacaaaaaacaaaaacaaaacaaaacaaacaaaaaaaa
ccacttggattgtgctcatgtcaggctagtctggggagtttttgcattta
tagtgcctgtgaatatagttttgcaaagaaattaaacttcatgctgttcc
ccttagagaaaagccaactgtataacacagtgtatttgttttgttttttt
tttttgaaacttgtctgctttgtttgtgggactggtaggactccctctaa
aagaaaccaatggaaacaggatcagactttgctatggtaacttggtggtg
atgaaaagaacagacctgaccttcaaccagaagatgctaggcaggacatc
caagcttgaggcacctggctgtgaatgtctggggtcaaagaaaaaaaggg
ggtggggattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28897793_28898834
seq2: B6Ng01-125H08.b_47_1092

seq1  GAATTCATTCATGTTTTTCCTTTCCTTGCAATGAGCTCAGACACAGGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATGTTTTTCCTTTCCTTGCAATGAGCTCAGACACAGGTTC  50

seq1  TTAAGCAACCTGTGCTGCCACTCCTCTGTAGATCACTGCCTTGCTCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCAACCTGTGCTGCCACTCCTCTGTAGATCACTGCCTTGCTCAAAG  100

seq1  TAGCACAGCATGGGAAAACAACCGGGTTGGAAGACAGACAGAAGAAAGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACAGCATGGGAAAACAACCGGGTTGGAAGACAGACAGAAGAAAGCC  150

seq1  TCTCCTGCTTTAAGGCAGTGGGCAAAGGCTGAAACTTGAATGGTGGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCTTTAAGGCAGTGGGCAAAGGCTGAAACTTGAATGGTGGGGGT  200

seq1  TAGGAATTAAATAAGGGGAACCAAAAAGGACAAATGGCTGTTGGAATAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTAAATAAGGGGAACCAAAAAGGACAAATGGCTGTTGGAATAGC  250

seq1  ATGCTGATACCTCCCATTTATTCTTTCTCTTTTTGATAGGAGTGACTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGATACCTCCCATTTATTCTTTCTCTTTTTGATAGGAGTGACTGGT  300

seq1  GGCTGACTTGAATCAGAGCATCTTGAGTCACACTCAAGAGACATTCATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGACTTGAATCAGAGCATCTTGAGTCACACTCAAGAGACATTCATGA  350

seq1  TATCAGATCTTTAGGGGTTCCTTCATGGAAAGTCCAGAGACTCAGACTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGATCTTTAGGGGTTCCTTCATGGAAAGTCCAGAGACTCAGACTTG  400

seq1  CAAGACTCTGAGGCCTCTATAGACCTTCATGAGGCTCTTACTCTACCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACTCTGAGGCCTCTATAGACCTTCATGAGGCTCTTACTCTACCTAG  450

seq1  GACTCCAATAAGAGGTAAGCAATTATTTAGGATTAGAACTTTTTTGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAATAAGAGGTAAGCAATTATTTAGGATTAGAACTTTTTTGAAGA  500

seq1  TAGTAGCTATATACTTGATAGACACAGAGGAACTTTCCCAGTGCTGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGCTATATACTTGATAGACACAGAGGAACTTTCCCAGTGCTGTGTG  550

seq1  TGAGTGGCCTGTGATCCTGTAAATAATCCCAATAAACTCATTGATTCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGCCTGTGATCCTGTAAATAATCCCAATAAACTCATTGATTCAAA  600

seq1  AAACTGGACTTGGGTGAAATATTTTCTTCAATTTAACAGTGTCCTGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGACTTGGGTGAAATATTTTCTTCAATTTAACAGTGTCCTGCTTA  650

seq1  TCTAGGATGCATAGACCTTTTCATCTCCAGAAAATCTAACAAAATATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGATGCATAGACCTTTTCATCTCCAGAAAATCTAACAAAATATCCA  700

seq1  TGTCATTCCATAGAGTCATATTTGGGGCCATATAGTGTGATGTGATATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTCCATAGAGTCATATTTGGGGCCATATAGTGTGATGTGATATGC  750

seq1  AGTAAGGCATACACGTTACTTTGTTCTGAATCCGTGTATAATCACAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGCATACACGTTACTTTGTTCTGAATCCGTGTATAATCACAGACT  800

seq1  CAGGTTTAGTAT-AACATATTTTGAAAGGCAGGCTTCTTTATAAAGCTAC  849
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTAGTATAAACATATTTTGAAAGGCAGGCTTCTTTATAAAGCTAC  850

seq1  CATCTTCCCATGTATGGACTCCACTATAACATAAGTGAAGCTCTATTATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCCATGTATGGACTCCACTATAACATAAGTGAAGCTCTATTATA  900

seq1  GCCATACTAACTTCATATAGGTTGTTAGAGGAT-CAAATGAAAATATTTT  948
      |||||||||||||||| |||||||||||||||| |||||  |||||||||
seq2  GCCATACTAACTTCATTTAGGTTGTTAGAGGATACAAATTGAAATATTTT  950

seq1  AAAACGTAAAAGTTGAGTAT-GGTATGTCATATCACACACACACAAACAC  997
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AAAACGTAAAAGTTGAGTATGGGTATGTCATATCACACACACACAAACAC  1000

seq1  ACACACAACTCAAAAACCGTCATAGGAAGGAGGAA-GGGGAGGGGG  1042
      ||||||||||  | ||||||||||||||||||||| ||||||||||
seq2  ACACACAACTTCATAACCGTCATAGGAAGGAGGAAGGGGGAGGGGG  1046

seq1: chr9_29036043_29037183
seq2: B6Ng01-125H08.g_66_1177 (reverse)

seq1  TAAATCCCCAACCCCCCTTTTTTTCTTTTGACACCAGGAACATTTCACAG  50
      ||||||||||  ||||||||||||| |||||| ||||  ||| |||||||
seq2  TAAATCCCCA--CCCCCTTTTTTTC-TTTGACCCCAG--ACA-TTCACAG  44

seq1  CCCAGGTTGGCATCAAGCTTGTGATGTTCCTGCCTTAGCATCTTCTGGGT  100
       ||||||  || ||||||||| |||| ||||||| ||||||||||| |||
seq2  -CCAGGT--GCCTCAAGCTTG-GATG-TCCTGCC-TAGCATCTTCT-GGT  87

seq1  TGAAGGTTCAGGTCTGTTCTATTTCATCCACCA-CAAGTTACCATAGCAA  149
      |||||| ||||||||||||| |||||| ||||| |||||||||||||| |
seq2  TGAAGG-TCAGGTCTGTTCT-TTTCAT-CACCACCAAGTTACCATAGC-A  133

seq1  AAGTCTGATCCTGTTTCCATTTGGTTTCTTTTTAGAGGGAGGTCCTTACC  199
      ||||||||||||||||||| |||||||| ||||||||||| |||| ||||
seq2  AAGTCTGATCCTGTTTCCA-TTGGTTTC-TTTTAGAGGGA-GTCC-TACC  179

seq1  AGTCCCACAAACAAAGCAGACAAGTTTCAAAAAAAAAAAAACAAAACAAA  249
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTCCCACAAACAAAGCAGACAAGTTTC-AAAAAAAAAAAACAAAACAAA  228

seq1  TACACTTGTGTTATACAGTTGGCTTTTCTCTTAGGGGAACAGCATGAAGT  299
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  TACAC-TGTGTTATACAGTTGGCTTTTCTCTAAGGGGAACAGCATGAAGT  277

seq1  TTAATTTCTTTGCAAAACTATATTCACAGGCACTATTAAATGCAAAAACT  349
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTAATTTCTTTGCAAAACTATATTCACAGGCACTA-TAAATGCAAAAACT  326

seq1  CCCCAGACTAGCCTGACATGAGCACAATCCAAGTGGTTTTTT---TTTGT  396
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  CCCCAGACTAGCCTGACATGAGCACAATCCAAGTGGTTTTTTTTGTTTGT  376

seq1  TTTGTTTTTGTTTTTGTTTTTTGTTTTTTGTTTTTTGTTTTTTGTAGAGT  446
      |||| |||||||||||||||||||||||||        ||||||||||||
seq2  TTTG-TTTTGTTTTTGTTTTTTGTTTTTTG--------TTTTTGTAGAGT  417

seq1  TGTCTCAAGTACTCAAGTATTCATTTAAGAACATAGATGTGATAATTTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAAGTACTCAAGTATTCATTTAAGAACATAGATGTGATAATTTGG  467

seq1  GTACCAGAAAGGAAATCCAGGCACATTGAGTACTGGAAAAGACAAAAATA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGAAAGGAAATCCAGGCACATTGAGTACTGGAAAAGACAAAAATA  517

seq1  ATTTCTGTAATATTTCTGATGATTTAGACATAGCCCACTGTACTAGCAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTAATATTTCTGATGATTTAGACATAGCCCACTGTACTAGCAAA  567

seq1  GCACCCTGGTCACCAGTGCAGTGTGTCCTGATGGTTACAGACAACACAAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCCTGGTCACCAGTGCAGTGTGTCCTGATGGTTACAGACAACACAAC  617

seq1  TGATAGGAGGCCAGTGGGCAAGGGCAGATGATTTCATATCCGTGGCCTCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGAGGCCAGTGGGCAAGGGCAGATGATTTCATATCCGTGGCCTCC  667

seq1  TCTGACTTCAAATGCCACTCAGATGGACAGTTCAACTTATTAAGCACCAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTCAAATGCCACTCAGATGGACAGTTCAACTTATTAAGCACCAA  717

seq1  GCTTCCAAACTGAGTAGGCCTGGAAGGAAAGCCCAAAGCAATCATATGAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCAAACTGAGTAGGCCTGGAAGGAAAGCCCAAAGCAATCATATGAC  767

seq1  CAGCACACATGCAAGATCACACACTCTCTCCAAAGGATTAGGGCATTTCT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACACATGCAAGATCACACACTCTCTCCAAAGGATTAGGGCATTTCT  817

seq1  AAATAGATTGATGTGCCTTGGGCCGTCTCTCCATTGCCATACCCTAGAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATTGATGTGCCTTGGGCCGTCTCTCCATTGCCATACCCTAGAGA  867

seq1  GCACAGCTTTATAAGAACCTTGGTTTTGCATGTCTGCTCTGACTATGAAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCTTTATAAGAACCTTGGTTTTGCATGTCTGCTCTGACTATGAAG  917

seq1  TCCAGAATAAATGCTGGCACTACATCCTACTTGAAGCAATATCCTGGAGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATAAATGCTGGCACTACATCCTACTTGAAGCAATATCCTGGAGC  967

seq1  TGGGTTGTGATCCCAGTTCACAATTACATTAAGGAAATCTAACACTTTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGTGATCCCAGTTCACAATTACATTAAGGAAATCTAACACTTTTT  1017

seq1  TTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTC  1067

seq1  GAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGAATTC  1141
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGAATTC  1112