BAC Information

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BAC

Clone NameB6Ng01-125L24
Chromosome9 (Build37)
Map Location 75,934,799 - 76,043,928
singlet/doubletdoublet
Overlap geneHmgcll1, Gfral
Upstream geneMyo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071
Downstream geneHcrtr2, C530008M07Rik, Tinag, LOC436082, 2310046A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-125L24.bB6Ng01-125L24.g
ACCDH928297DH928298
length1,1451,051
definitionDH928297|Mus musculus domesticus DNA, BAC clone: B6Ng01-125L24, 5' end.DH928298|Mus musculus domesticus DNA, BAC clone: B6Ng01-125L24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,934,799 - 75,935,970)(76,042,850 - 76,043,928)
sequence
gaattcattgaagatagccaggtttggctttggaatgttgctttagacac
atgtgggtcctagtctctaacggtcctggataaagagaagtctaccagag
accattctaatcccaccttttaatagaaatggcagtaacaacagtaaaac
aagcaggtttaaatttagataacaagaatcttggacaaaaaaacccttaa
tgtttcagtgtaggggaaatgagagagcccagcttcattagcaacatggc
taaccttggcttcaggaagcaggggctatactgcattttaatggaatctt
tgaagtggcttctagtaaaatttgtgatgtatgtagagtagatatcattt
gctttcatttaggggaggagaaacagtttgcaatgttccaaactagaagt
tactattaaggcaaggagacacgtaataagtagaaacttggctgcagtgg
taggaaacaaatgggagttataaacgaaatgcccccctcagtctgggaag
cacatccagttggctggtagaggaacctttcttggattttcaggttttat
gttttttttttaattacttaaacatgtaacttataggaccacatgggtat
gtggacatctataattcataattatcagatacttttaatggagagaaaat
attctgattatagatgtagtgtgggatatttatacctaccaaaaagcaat
agagcaagagaatgaggtgataaagtgtacaacggtttagtaatggaaga
aacatacatggccctacatacttgtcttcaagtttatgcaaaagccgagt
tttatcctgtttcatattccccaagtccccaaataaaacaccagtttaac
aaattggttaatctacttaatataaacaattgctcatttttctccattaa
aatgttttgagccctcataattaggtaaagcaggtaaaacaaataagacc
caatgctacaatagcagttccatgctaaatgctagcatagagacaaagca
gaagcccacatttctcatgaagaaatactacatgctttttccctaaatta
tagacctctaggctagggtggctttcttaaaatgcttcataagttatatc
cttcgaaggcataattataccctattacattcaagcattcatggt
gaattcaaacaggacaagatcttggaggcaggagctgttacagaccattg
aggggtgctgcttactggcttgcttcctgagcttgctcagactagtttct
tatagaacccaggaccaccagcccaggaatggcaccactcccccttgatt
actaattgagaaaatggccttacagctggatctcatgatggcatttctgc
agctaaggctccttcctctcagatgatcctagcttgtgtcaagtggacac
ataaacccacaaccagtacagtcatagaggctagttgcttatttgttcat
tcaaaatatagagtaatcagacacccatcttggcatcagttaggaatgtc
tgttttgcttgtttattttagttaaagaagacagttaataaggaaatgta
taccataaagagtaatgtgcaattctcagattaaaagggatcagagggaa
gaaaatctaagtctgaatcagaattcttttctccaccagttgaagaagta
aaaggcaggggaaatcttgaacccaactggcagggaagtagagaaatctt
aagcaccaaggatatagaatcagcattaacgaaaggtatttattgtggat
ggtgaaatacacacctgcagcagacacccagagaaaaagaccttctgctc
agtagagtgaggattcatgaagccaaacaaatacactctcctcaaaggct
gggagagactcctgtgtgctgaaaggtttgtgacaaaggttgagaaatta
tgaacaggagaagattgatagcttaacatgaaaagagaacagaaacaaca
ttctagtttaaatggggacagagtgggtgacacatatcttgggagaggtg
aggacgtttcattaaagattaatttcagagaccagcaaaagattctgaga
agaagttacaagggttgcagaggaaagaaactcaaaagggtgagagggag
acagaagagagagagaggccagaagcacgtgaatatgctttttagctctg
aagagttcctcagttaattaggttggtagttggagagtcagtcatctgga
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_75934799_75935970
seq2: B6Ng01-125L24.b_48_1192

seq1  GAATTCATTGAAGATAGCCAGGTTTGGCTTTGGAATGTTGCTTTAGACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGAAGATAGCCAGGTTTGGCTTTGGAATGTTGCTTTAGACAC  50

seq1  ATGTGGGTCCTAGTCTCTAACGGTCCTGGATAAAGAGAAGTCTACCAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGGTCCTAGTCTCTAACGGTCCTGGATAAAGAGAAGTCTACCAGAG  100

seq1  ACCATTCTAATCCCACCTTTTAATAGAAATGGCAGTAACAACAGTAAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCTAATCCCACCTTTTAATAGAAATGGCAGTAACAACAGTAAAAC  150

seq1  AAGCAGGTTTAAATTTAGATAACAAGAATCTTGGACAAAAAAACCCTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGTTTAAATTTAGATAACAAGAATCTTGGACAAAAAAACCCTTAA  200

seq1  TGTTTCAGTGTAGGGGAAATGAGAGAGCCCAGCTTCATTAGCAACATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCAGTGTAGGGGAAATGAGAGAGCCCAGCTTCATTAGCAACATGGC  250

seq1  TAACCTTGGCTTCAGGAAGCAGGGGCTATACTGCATTTTAATGGAATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTTGGCTTCAGGAAGCAGGGGCTATACTGCATTTTAATGGAATCTT  300

seq1  TGAAGTGGCTTCTAGTAAAATTTGTGATGTATGTAGAGTAGATATCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGCTTCTAGTAAAATTTGTGATGTATGTAGAGTAGATATCATTT  350

seq1  GCTTTCATTTAGGGGAGGAGAAACAGTTTGCAATGTTCCAAACTAGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCATTTAGGGGAGGAGAAACAGTTTGCAATGTTCCAAACTAGAAGT  400

seq1  TACTATTAAGGCAAGGAGACACGTAATAAGTAGAAACTTGGCTGCAGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTAAGGCAAGGAGACACGTAATAAGTAGAAACTTGGCTGCAGTGG  450

seq1  TAGGAAACAAATGGGAGTTATAAACGAAATGCCCCCCTCAGTCTGGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAACAAATGGGAGTTATAAACGAAATGCCCCCCTCAGTCTGGGAAG  500

seq1  CACATCCAGTTGGCTGGTAGAGGAACCTTTCTTGGATTTTCAGGTTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCCAGTTGGCTGGTAGAGGAACCTTTCTTGGATTTTCAGGTTTTAT  550

seq1  GTTTTTTTTTTAATTACTTAAACATGTAACTTATAGGACCACATGGGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTTTTTAATTACTTAAACATGTAACTTATAGGACCACATGGGTAT  600

seq1  GTGGACATCTATAATTCATAATTATCAGATACTTTTAATGGAGAGAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACATCTATAATTCATAATTATCAGATACTTTTAATGGAGAGAAAAT  650

seq1  ATTCTGATTATAGATGTAGTGTGGGATATTTATACCTACCAAAAAGCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATTATAGATGTAGTGTGGGATATTTATACCTACCAAAAAGCAAT  700

seq1  AGAGCAAGAGAATGAGGTGATAAAGTGTACAACGGTTTAGTAATGGAAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGAGAATGAGGTGATAAAGTGTACAACGGTTTAGTAATGGAAGA  750

seq1  AACATACATGGCCCTACATACTTGTCTTCAAGTTTATGCAAAAGCCGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACATGGCCCTACATACTTGTCTTCAAGTTTATGCAAAAGCCGAGT  800

seq1  TTTATCCTGTTTCATATTCCCCAAGTCCCCAAATAAAACACCAGTTTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTGTTTCATATTCCCCAAGTCCCCAAATAAAACACCAGTTTAAC  850

seq1  AAATTGGTTAATCTACTTAATATAAAACAATTGCTCATTTTTCTCCATTA  900
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAATTGGTTAATCTACTTAATAT-AAACAATTGCTCATTTTTCTCCATTA  899

seq1  AAATGTTTTGAGCCCTCATAATTAGGTAAAGCAGGGTAAAACAAATAAGA  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATGTTTTGAGCCCTCATAATTAGGTAAAGCA-GGTAAAACAAATAAGA  948

seq1  CCCAATGCTACAAATAGCAGTTCCATGCTAATTGCTAGCATAGAGACAAA  1000
      ||||||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  CCCAATGCTAC-AATAGCAGTTCCATGCTAAATGCTAGCATAGAGACAAA  997

seq1  GCAGAAAGCCCAACATTTCTCATGAAGAAATACTACATGCTTTTTTTTCC  1050
      |||| |||||| |||||||||||||||||||||||||||||||||     
seq2  GCAG-AAGCCC-ACATTTCTCATGAAGAAATACTACATGCTTTTT-----  1040

seq1  CCTTAAATTTAATAGACCTCTA-GCTAGTGTGCCTTTCCTTATAATGCTT  1099
      || ||||||  ||||||||||| ||||| ||| |||| |||| |||||||
seq2  CCCTAAATT--ATAGACCTCTAGGCTAGGGTGGCTTT-CTTAAAATGCTT  1087

seq1  TCCATATGTT-TATTATTCTCTTTTAGAAAGACTAAATTATTAACCTAAT  1148
        |||| ||| |||  |||         ||| |  ||||| || ||||  
seq2  --CATAAGTTATATCCTTC--------GAAGGCATAATTA-TACCCTA--  1124

seq1  TTTTACATCAAAAGCATTCATGGT  1172
        ||||||   |||||||||||||
seq2  --TTACAT-TCAAGCATTCATGGT  1145

seq1: chr9_76042850_76043928
seq2: B6Ng01-125L24.g_66_1116 (reverse)

seq1  TTCCAAGATGACTGACTTCTTCCAACTAACCAACCTAAATTACGTGAGGA  50
      |||| ||||||||||||   ||||||| |||||||| |||||  ||||| 
seq2  TTCC-AGATGACTGACT--CTCCAACT-ACCAACCT-AATTAACTGAGG-  44

seq1  AAACTCTTCAGAGGCTTAAAAAAAAGCAATATTCACGTTGGCTCTCTGGC  100
       ||||||||||| |||    ||||||| ||||||||||  ||| ||||||
seq2  -AACTCTTCAGA-GCT----AAAAAGC-ATATTCACGT--GCT-TCTGGC  84

seq1  C-CTCTCTCTTCCTCCTTCTGTCTTCCCTCCTCACCCCTTTTTGAGTTTT  149
      | ||||||||     |||||||| ||||| |||||||  |||||||||| 
seq2  CTCTCTCTCT-----CTTCTGTC-TCCCT-CTCACCC--TTTTGAGTTT-  124

seq1  CCTTTCCTCTGCAACCCTTGTAAC-TCTTCTCAGAATCTTTTTGCTGGTC  198
       ||||||||||||||||||||||| ||||||||||||| |||||||||||
seq2  -CTTTCCTCTGCAACCCTTGTAACTTCTTCTCAGAATC-TTTTGCTGGTC  172

seq1  TCTGAAATTAATCTTTAATGAAACGTCCTCACCTCTTCCCAAGATATGTG  248
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTGAAATTAATCTTTAATGAAACGTCCTCACCTC-TCCCAAGATATGTG  221

seq1  TCACCCACTCTGTCCCCCATTTAAACTAGAATGTTGTTTCTGTTCTCTTT  298
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCACCCACTCTGT-CCCCATTTAAACTAGAATGTTGTTTCTGTTCTCTTT  270

seq1  TCATGTTAAGCTATCAATCTTCTCCTGTTCATAATTTCTCAACCTTTGTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTAAGCTATCAATCTTCTCCTGTTCATAATTTCTCAACCTTTGTC  320

seq1  ACAAACCTTTCAGCACACAGGAGTCTCTCCCAGCCTTTGAGGAGAGTGTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCTTTCAGCACACAGGAGTCTCTCCCAGCCTTTGAGGAGAGTGTA  370

seq1  TTTGTTTGGCTTCATGAATCCTCACTCTACTGAGCAGAAGGTCTTTTTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGCTTCATGAATCCTCACTCTACTGAGCAGAAGGTCTTTTTCT  420

seq1  CTGGGTGTCTGCTGCAGGTGTGTATTTCACCATCCACAATAAATACCTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGTCTGCTGCAGGTGTGTATTTCACCATCCACAATAAATACCTTT  470

seq1  CGTTAATGCTGATTCTATATCCTTGGTGCTTAAGATTTCTCTACTTCCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAATGCTGATTCTATATCCTTGGTGCTTAAGATTTCTCTACTTCCCT  520

seq1  GCCAGTTGGGTTCAAGATTTCCCCTGCCTTTTACTTCTTCAACTGGTGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTGGGTTCAAGATTTCCCCTGCCTTTTACTTCTTCAACTGGTGGA  570

seq1  GAAAAGAATTCTGATTCAGACTTAGATTTTCTTCCCTCTGATCCCTTTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAATTCTGATTCAGACTTAGATTTTCTTCCCTCTGATCCCTTTTA  620

seq1  ATCTGAGAATTGCACATTACTCTTTATGGTATACATTTCCTTATTAACTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGAATTGCACATTACTCTTTATGGTATACATTTCCTTATTAACTG  670

seq1  TCTTCTTTAACTAAAATAAACAAGCAAAACAGACATTCCTAACTGATGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTAACTAAAATAAACAAGCAAAACAGACATTCCTAACTGATGCC  720

seq1  AAGATGGGTGTCTGATTACTCTATATTTTGAATGAACAAATAAGCAACTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGGTGTCTGATTACTCTATATTTTGAATGAACAAATAAGCAACTA  770

seq1  GCCTCTATGACTGTACTGGTTGTGGGTTTATGTGTCCACTTGACACAAGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTATGACTGTACTGGTTGTGGGTTTATGTGTCCACTTGACACAAGC  820

seq1  TAGGATCATCTGAGAGGAAGGAGCCTTAGCTGCAGAAATGCCATCATGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCATCTGAGAGGAAGGAGCCTTAGCTGCAGAAATGCCATCATGAG  870

seq1  ATCCAGCTGTAAGGCCATTTTCTCAATTAGTAATCAAGGGGGAGTGGTGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGCTGTAAGGCCATTTTCTCAATTAGTAATCAAGGGGGAGTGGTGC  920

seq1  CATTCCTGGGCTGGTGGTCCTGGGTTCTATAAGAAACTAGTCTGAGCAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTGGGCTGGTGGTCCTGGGTTCTATAAGAAACTAGTCTGAGCAAG  970

seq1  CTCAGGAAGCAAGCCAGTAAGCAGCACCCCTCAATGGTCTGTAACAGCTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAAGCAAGCCAGTAAGCAGCACCCCTCAATGGTCTGTAACAGCTC  1020

seq1  CTGCCTCCAAGATCTTGTCCTGTTTGAATTC  1079
      |||||||||||||||||||||||||||||||
seq2  CTGCCTCCAAGATCTTGTCCTGTTTGAATTC  1051