BAC Information

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BAC

Clone NameB6Ng01-126F01
Chromosome9 (Build37)
Map Location 11,646,301 - 11,731,705
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC665178
Downstream geneLOC100039989, LOC622505, LOC100039680
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-126F01.bB6Ng01-126F01.g
ACCDH928715DH928716
length859852
definitionDH928715|Mus musculus domesticus DNA, BAC clone: B6Ng01-126F01, 5' end.DH928716|Mus musculus domesticus DNA, BAC clone: B6Ng01-126F01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,646,301 - 11,647,151)(11,730,852 - 11,731,705)
sequence
gaattctctggccagatttaaagtatatttacagtatttcatagcagaac
tacttacataaaatgtctcaacatttgcttacatttggcatatcttctac
aacaaacatgactaaaaatacacaatgtaattgcatataactatataaca
tatatacatatatgtatctatttgaagcacacatacacacacacacatac
atactcactcactcactcacacatatctgagacaaggtgtactgtacagc
cctgcttggctgtgaatacattacacagattttgattgcccgacccaggg
agttttacctgcctctgactcctgattactgatttttatatgtcactatg
ctcaactctaaaatgactttgatagtaaatgaaagtttaaaaatataaaa
gacccatctgtgaattaattatgtagcatacttttcatctactatatttc
aaatgttattaaaagtatgaaaaagtttatttcttaagtgacattacaaa
aaaatggaagtgtgaatataattttccaagaaacataaattgtttttttc
tcagaaaaatttttaaattgattatagccctgataatcatacatatcttt
tttattttttgattcatttatttaatttaatttaaataatgattagttat
ttatttatgttcttttttcttcttttatattataggtcctatgcatgtgt
gtatatatatatatatatatatatatatatatatatatatataggcatac
atatttttattagatgccttagtgtaggaaccagaggattctctgtgtct
atgtctgcttcttgtgccccttctaggggaaaacacattcacttagttta
gtctttgtc
gaattctctttagatctgtgccccattttaagtggattattaggggtttt
ttatatctagtttcttgccttcttttaatattttgccatattggtcttct
attggatgtggaatcaataaaactatttcctattctgaaggctttgaagt
taaaggttaatcaattccatgtattatcgagaagctattaatggaacata
ttgaagctgttattgacctgtgattaggcaggatttaactgccctagaaa
actgagagagtggagaaagttactggcacctgacttatctggtctctgcc
aggtgtgccctgtggttgatactgtgtctcatataatctaagtaacaatg
aattgttcttagtagaaaaattagcaaggtacttaaagccttagctctac
aagactgtttattgaacactgagcagagatagttcataaaatattgtcac
ttaaagagttgagaaaagtacaataaacactgagacaatactttatcatt
catatatttttgaacacacatcttgggtgttctggagagtcaattgttta
aattatagaataattactagatgttatcataatattagagacattttatt
tgcttttagttaggtgttttttatgtatctgtgtatggacatgtacacat
gagtataggcaccatgtaggcctgtagaatttgttggggtcccctgaacc
ttgaattatgtgttacatgtgtttgtgaactagacctttgtactgggaat
acaactcagtactctgtaagaacattacccactattactgctcactcatc
cctctagcctgaaacagttatgataaggaaagttagcaatcaggcttttc
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_11646301_11647151
seq2: B6Ng01-126F01.b_47_899

seq1  GAATTCTCTGGCCAGATTTAAAGTATATTTACAGTATTTCATAGCAGAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGCCAGATTTAAAGTATATTTACAGTATTTCATAGCAGAAC  50

seq1  TACTTACATAAAATGTCTCAACATTTGCTTACATTTGGCATATCTTCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACATAAAATGTCTCAACATTTGCTTACATTTGGCATATCTTCTAC  100

seq1  AACAAACATGACTAAAAATACACAATGTAATTGCATATAACTATATAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACATGACTAAAAATACACAATGTAATTGCATATAACTATATAACA  150

seq1  TATATACATATATGTATCTATTTGAAGCACACATACACACACACACATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATATATGTATCTATTTGAAGCACACATACACACACACACATAC  200

seq1  ATACTCACTCACTCACTCACACATATCTGAGACAAGGTGTACTGTACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCACTCACTCACTCACACATATCTGAGACAAGGTGTACTGTACAGC  250

seq1  CCTGCTTGGCTGTGAATACATTACACAGATTTTGATTGCCCGACCCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTGGCTGTGAATACATTACACAGATTTTGATTGCCCGACCCAGGG  300

seq1  AGTTTTACCTGCCTCTGACTCCTGATTACTGATTTTTATATGTCACTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACCTGCCTCTGACTCCTGATTACTGATTTTTATATGTCACTATG  350

seq1  CTCAACTCTAAAATGACTTTGATAGTAAATGAAAGTTTAAAAATATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTCTAAAATGACTTTGATAGTAAATGAAAGTTTAAAAATATAAAA  400

seq1  GACCCATCTGTGAATTAATTATGTAGCATACTTTTCATCTACTATATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATCTGTGAATTAATTATGTAGCATACTTTTCATCTACTATATTTC  450

seq1  AAATGTTATTAAAAGTATGAAAAAGTTTATTTCTTAAGTGACATTACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTATTAAAAGTATGAAAAAGTTTATTTCTTAAGTGACATTACAAA  500

seq1  AAAATGGAAGTGTGAATATAATTTTCCAAGAAACATAAATTGTTTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAAGTGTGAATATAATTTTCCAAGAAACATAAATTGTTTTTTTC  550

seq1  TCAGAAAAATTTTTAAATTGATTATAGCCCTGATAATCATACATATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAAAATTTTTAAATTGATTATAGCCCTGATAATCATACATATCTTT  600

seq1  TTTATTTTTTGATTCATTTATTTAATTTAATTTAAATAATGATTAGTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTTGATTCATTTATTTAATTTAATTTAAATAATGATTAGTTAT  650

seq1  TTATTTATGTTCTTTTTTCTTCTTTTATATTATAGGTCCTATGCATGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATGTTCTTTTTTCTTCTTTTATATTATAGGTCCTATGCATGTGT  700

seq1  GTATATATATATATATATATATATATATATATATATATATATAGGCTTCC  750
      |||||||||||||||||||||||||||||||||||||||||||||| | |
seq2  GTATATATATATATATATATATATATATATATATATATATATAGGCATAC  750

seq1  A-GTTTTTATTAGATTCCTTAGTGTAGGAACCAGTGG-TTCTCTGTGTCT  798
      |  |||||||||||| |||||||||||||||||| || ||||||||||||
seq2  ATATTTTTATTAGATGCCTTAGTGTAGGAACCAGAGGATTCTCTGTGTCT  800

seq1  ATGTCTGCTTCTTGTGCCCCTTCTAGGGCAATTCTCTTTCTCTTAGTTTA  848
      |||||||||||||||||||||||||||| ||  | | ||| |||||||||
seq2  ATGTCTGCTTCTTGTGCCCCTTCTAGGGGAAAACACATTCACTTAGTTTA  850

seq1  GTC  851
      |||
seq2  GTC  853

seq1: chr9_11730852_11731705
seq2: B6Ng01-126F01.g_67_918 (reverse)

seq1  TTGTAAAGCCTGTTTGCTTACTTTCCTTATCATAACTGTTTTCAGGCTAG  50
      ||| |||||||| ||||| ||||||||||||||||||| |||||||||||
seq2  TTGAAAAGCCTGATTGCTAACTTTCCTTATCATAACTG-TTTCAGGCTAG  49

seq1  AGGGATGAGTGAGCAGTAAATAGTGGGTAATGTTCTTACAGAGTACCTGA  100
      ||||||||||||||||| ||||||||||||||||||||||||||| ||||
seq2  AGGGATGAGTGAGCAGT-AATAGTGGGTAATGTTCTTACAGAGTA-CTGA  97

seq1  GTTGTATTCCCAGTACAAAGGTCTAGTTCACAAACACATGTAACACAATA  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTGTATTCCCAGTACAAAGGTCTAGTTCACAAACACATGTAACAC-ATA  146

seq1  ATTCAAGGTTCAGGGGA-CCCAACAACTTCTACAGGCCTACATGGTGCCT  199
      ||||||||||||||||| |||||||| |||||||||||||||||||||||
seq2  ATTCAAGGTTCAGGGGACCCCAACAAATTCTACAGGCCTACATGGTGCCT  196

seq1  ATACTCATGTGTACATGTCCATACACAGATACAT-AAAAACACCTAACTA  248
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATACTCATGTGTACATGTCCATACACAGATACATAAAAAACACCTAACTA  246

seq1  AAAGCAAATAAAATGTCTCTAATATTATGATAACATCTAGTAATTATTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAATAAAATGTCTCTAATATTATGATAACATCTAGTAATTATTCT  296

seq1  ATAATTTAAACAATTGACTCTCCAGAACACCCAAGATGTGTGTTCAAAAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTAAACAATTGACTCTCCAGAACACCCAAGATGTGTGTTCAAAAA  346

seq1  TATATGAATGATAAAGTATTGTCTCAGTGTTTATTGTACTTTTCTCAACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAATGATAAAGTATTGTCTCAGTGTTTATTGTACTTTTCTCAACT  396

seq1  CTTTAAGTGACAATATTTTATGAACTATCTCTGCTCAGTGTTCAATAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGTGACAATATTTTATGAACTATCTCTGCTCAGTGTTCAATAAAC  446

seq1  AGTCTTGTAGAGCTAAGGCTTTAAGTACCTTGCTAATTTTTCTACTAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGTAGAGCTAAGGCTTTAAGTACCTTGCTAATTTTTCTACTAAGA  496

seq1  ACAATTCATTGTTACTTAGATTATATGAGACACAGTATCAACCACAGGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCATTGTTACTTAGATTATATGAGACACAGTATCAACCACAGGGC  546

seq1  ACACCTGGCAGAGACCAGATAAGTCAGGTGCCAGTAACTTTCTCCACTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTGGCAGAGACCAGATAAGTCAGGTGCCAGTAACTTTCTCCACTCT  596

seq1  CTCAGTTTTCTAGGGCAGTTAAATCCTGCCTAATCACAGGTCAATAACAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTTTCTAGGGCAGTTAAATCCTGCCTAATCACAGGTCAATAACAG  646

seq1  CTTCAATATGTTCCATTAATAGCTTCTCGATAATACATGGAATTGATTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATATGTTCCATTAATAGCTTCTCGATAATACATGGAATTGATTAA  696

seq1  CCTTTAACTTCAAAGCCTTCAGAATAGGAAATAGTTTTATTGATTCCACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAACTTCAAAGCCTTCAGAATAGGAAATAGTTTTATTGATTCCACA  746

seq1  TCCAATAGAAGACCAATATGGCAAAATATTAAAAGAAGGCAAGAAACTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAGAAGACCAATATGGCAAAATATTAAAAGAAGGCAAGAAACTAG  796

seq1  ATATAAAAAACCCCTAATAATCCACTTAAAATGGGGCACAGATCTAAAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAAAAACCCCTAATAATCCACTTAAAATGGGGCACAGATCTAAAGA  846

seq1  GAATTC  854
      ||||||
seq2  GAATTC  852