BAC Information

Click to search

BAC

Clone NameB6Ng01-127E08
ChromosomeY (Build37)9 (Build37)
Map Location 248,365 - 248,46114,423,342 - 14,424,323
singlet/doubletsingletsinglet
Overlap geneJarid1d
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3
Downstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127E08.bB6Ng01-127E08.g
ACCDH929430DH929431
length1,005972
definitionDH929430|Mus musculus domesticus DNA, BAC clone: B6Ng01-127E08, 5' end.DH929431|Mus musculus domesticus DNA, BAC clone: B6Ng01-127E08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(248,365 - 248,461)(14,423,342 - 14,424,323)
sequence
gaattcactctgtagaccaggctggcctcaaactcagaaatcctcctgcc
tctgcctcccaagtgctgggattaaaggtatgtgccaccactgcccagct
tgggaggtgaaatttataatggcatgactcatttggacttttggtactgg
ctaatcaaacatggtgtttccaggcttgaaatagataggaagcctactgc
atatcagtttgatctgtataagcagaaaaattctcaaacaaatgaaagaa
agctacattggatcatggcagaaggcaatctcagcccattccggcagatc
caggaccccttaaatgaaggggtggccaggatcccctgaggaagtatctt
gataagacacctaaaagttttgctgctagcctttctccagtccttcccca
cagggacctacagccttttacaagggtaactgtacactgggagaaaggaa
acaataagattttctgggggtctattggatactggttctgagttgacact
gatcccaggagatcccaagaaacattgtgtctttccagttaaagaaaggg
cttatggagggcaggtaattaatggagttttgactgatgtctgactcaca
gtaggtctagtgggtccccaaacacatcctgtggtcatttccccagttcc
agaatgtataattgggatagatatactcagaaattagcagaattctcaca
ttagttctctgacctgtggagtgagggctattatggttggaaaggctaaa
tggaagcctttagagttgcctctgccaaagaaaatagtgaatcaaaaaca
gtatcgtattcctggaggaattgcagaaattactgccactatcaaggact
tgaaagatgcaggggtaatgattcccaccacatttccctttaactctcct
ttctggccaatgcagaagagagatggatcttggagaatgacagttgacta
gcaaaactaaatcagctagtactccatttgcagctgctgtaccagatgta
gtttc
gaattcctgctgccatgccttcccacgtgcagtgctgtgagctaaaataa
tgctttctctcattaattatgtcttggtcatgtctttggttatgggaatg
agagaagtaattcatgtatctatatgtagtatggtttctcctacatatac
atacatatgcctaatttaagttatataatacacctgttaagcaactggta
ataataactaaaccacacagttatacagtatattgctctgtctggctcac
aatgccttgtatttgcatatgaatggcaggaaatggatgctgcctggaca
cattggacagagttgagtggtgagatggtaatactcacacaaggatattc
ataaagcttatggagttttattccaagaatttgccatgtaatcgttttgg
aatgctgttgattaggtacacttgaactacagaaaatgaaattacaaata
agaagatgctagtgtccattggtccaccagttccgatgctagcgtgtctg
tgactgtgtctggaatattctctcctcagtcaggtgtggccaaacatacc
tgtgaccctgacatctaagaggctatggcagtatcaccaggagttcatgt
gagcctcagctacacactgagcacgggatatccagagctgcctgaaacaa
gaacaaacccaccatcaaacaagagcaataacagagagcccctgtcagtc
ctcgggtcccttgcagtcctttgtgcacgtccactctgtgccacaacagt
gcctgtgacttctgtctgtcagcatcattcttcacctttagctatacagt
tctggtgtagccagtacttgtgaaagattctcgagagccccaccacccag
tgagcatctgaaggactcatggtgagttctaacatctctgctgagatgtt
atgggaatcgaattcgtacttacatgggtcaaaatcacacttggaaagac
atggacttcaactttaaacgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_248365_248461
seq2: B6Ng01-127E08.b_52_148

seq1  TCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTG  50
      ||||| ||||||||||||||||||| ||||||||||||| ||||||||||
seq2  TCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCTCCTGCCTCTG  50

seq1  CTTCCCAAGTGCTGGGATTAAAGGAGTGCGCCACCACTGCCCAGCTT  97
      | ||||||||||||||||||||||  || ||||||||||||||||||
seq2  CCTCCCAAGTGCTGGGATTAAAGGTATGTGCCACCACTGCCCAGCTT  97

seq1: chr9_14423342_14424323
seq2: B6Ng01-127E08.g_69_1040 (reverse)

seq1  ATCGTTTTAAAGTCTGAGTTCCATGGTACTTTCCAAAGTGTGATTTTGAA  50
      |||| |||||||| |||  ||||||   |||||| |||||||||||||| 
seq2  ATCG-TTTAAAGT-TGAAGTCCATG--TCTTTCC-AAGTGTGATTTTGAC  45

seq1  CCATAGTAAGTACGAATTCGAATTCCCCATAAACATCTCAGCAGAGATGT  100
      |||| ||||||||||||||||  | ||||| |||||||||||||||||||
seq2  CCAT-GTAAGTACGAATTCGA--TTCCCAT-AACATCTCAGCAGAGATGT  91

seq1  TAGAACTCACCATGAGTCCCTCAGATGCTCACTGGGTGGTGGGGCTCTCG  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAGAACTCACCATGAGTCCTTCAGATGCTCACTGGGTGGTGGGGCTCTCG  141

seq1  AGATTCTTTCACAAGTACTGGCTACACCAGAACTGTAATAGCTAAAGGTG  200
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGAATCTTTCACAAGTACTGGCTACACCAGAACTGT-ATAGCTAAAGGTG  190

seq1  AAGAATGATGCTGACAGACAGAAGTCACAGGCACTGTTGTGGCACAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGATGCTGACAGACAGAAGTCACAGGCACTGTTGTGGCACAGAGT  240

seq1  GGACGTGCACAAAGGACTGCAAGGGACCCGAGGACTGACAGGGGCTCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTGCACAAAGGACTGCAAGGGACCCGAGGACTGACAGGGGCTCTCT  290

seq1  GTTATTGCTCTTGTTTGATGGTGGGTTTGTTCTTGTTTCAGGCAGCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGCTCTTGTTTGATGGTGGGTTTGTTCTTGTTTCAGGCAGCTCTG  340

seq1  GATATCCCGTGCTCAGTGTGTAGCTGAGGCTCACATGAACTCCTGGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCCCGTGCTCAGTGTGTAGCTGAGGCTCACATGAACTCCTGGTGAT  390

seq1  ACTGCCATAGCCTCTTAGATGTCAGGGTCACAGGTATGTTTGGCCACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCATAGCCTCTTAGATGTCAGGGTCACAGGTATGTTTGGCCACACC  440

seq1  TGACTGAGGAGAGAATATTCCAGACACAGTCACAGACACGCTAGCATCGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGGAGAGAATATTCCAGACACAGTCACAGACACGCTAGCATCGG  490

seq1  AACTGGTGGACCAATGGACACTAGCATCTTCTTATTTGTAATTTCATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTGGACCAATGGACACTAGCATCTTCTTATTTGTAATTTCATTTT  540

seq1  CTGTAGTTCAAGTGTACCTAATCAACAGCATTCCAAAACGATTACATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTTCAAGTGTACCTAATCAACAGCATTCCAAAACGATTACATGGC  590

seq1  AAATTCTTGGAATAAAACTCCATAAGCTTTATGAATATCCTTGTGTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTTGGAATAAAACTCCATAAGCTTTATGAATATCCTTGTGTGAGT  640

seq1  ATTACCATCTCACCACTCAACTCTGTCCAATGTGTCCAGGCAGCATCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCATCTCACCACTCAACTCTGTCCAATGTGTCCAGGCAGCATCCAT  690

seq1  TTCCTGCCATTCATATGCAAATACAAGGCATTGTGAGCCAGACAGAGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCATTCATATGCAAATACAAGGCATTGTGAGCCAGACAGAGCAA  740

seq1  TATACTGTATAACTGTGTGGTTTAGTTATTATTACCAGTTGCTTAACAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTATAACTGTGTGGTTTAGTTATTATTACCAGTTGCTTAACAGG  790

seq1  TGTATTATATAACTTAAATTAGGCATATGTATGTATATGTAGGAGAAACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATATAACTTAAATTAGGCATATGTATGTATATGTAGGAGAAACC  840

seq1  ATACTACATATAGATACATGAATTACTTCTCTCATTCCCATAACCAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACATATAGATACATGAATTACTTCTCTCATTCCCATAACCAAAGA  890

seq1  CATGACCAAGACATAATTAATGAGAGAAAGCATTATTTTAGCTCACAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCAAGACATAATTAATGAGAGAAAGCATTATTTTAGCTCACAGCA  940

seq1  CTGCACGTGGGAAGGCATGGCAGCAGGAATTC  982
      ||||||||||||||||||||||||||||||||
seq2  CTGCACGTGGGAAGGCATGGCAGCAGGAATTC  972