BAC Information

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BAC

Clone NameB6Ng01-127G12
Chromosome2 (Build37)9 (Build37)
Map Location 75,278,787 - 75,279,910114,478,924 - 114,478,999
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423
Downstream geneLOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps, Ttc30b, Ttc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-127G12.bB6Ng01-127G12.g
ACCDH929532DH929533
length1,12176
definitionDH929532|Mus musculus domesticus DNA, BAC clone: B6Ng01-127G12, 5' end.DH929533|Mus musculus domesticus DNA, BAC clone: B6Ng01-127G12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(75,278,787 - 75,279,910)(114,478,924 - 114,478,999)
sequence
gaattcatgaatagcccacagagtacaatataaatacatatggcaaagaa
gacaaggcagaagatgttcaatatccatttttttcctaaaactagataaa
gccgtgtttatatctgcagatgagagctgccctcagcctctgtcagaaaa
gcttctctttgcagtgggtgacagtgcagaaattcataactggtcaaagc
tctcacaataagcagttgctgagtgcttagctttgaatgggacaactgta
tctatcgggaatatcccaccaggctcaggaataattgtagaagaaaggga
agaaagaatgtaaaagccagattggacgcagttctatgaaacaccgcctt
ctggatgtcacgtgacaactgtgcctatgatgtcgtgataatggtggtta
ctggcataagactgggtctgtcaaccctgcatcatggatagggcaagggt
tcaggaatcctcctccccgtgagaagctattgacagtcaatggcttctga
agggtgagggaagttgttttcttcagtggtgtagccaactgttgagttgc
ctctactccagcaaataaccgtcaacccatgcctatgcatgcgactctaa
gcaaacctaaacaaaagagcacttccatgcaagcagcatggcagttccag
ctttccaaattatgtaaagaagaggcaagcaatgtcttttgaagtatata
tcccttccagccaaagtaaaattttggttgtaatgataaataatccctat
actttgctgtaattattacacttaaagtgggccctatttttcaggagaca
gtctatggtaaataaccaacaatgtgacaagacaaaatagactcagaaca
aggacccacagtaacccagatgaagccattaatttcactaaatactattc
tagcactgctaagagatgcctcccctcaaagttgctgttctttcttgttg
tagatatcacaaaggccttggaccaattcctgtaggtgctaaggtctcac
ttaccacgagggaacgcaagcctcacacctctaagtccattggtttcctg
aaaggagtttttttattccaatcattttaatagttctacttcatttagta
agaattcattcttagagaaaa
caggacagccagggctatacagagaaaccctgtctcctgtctcgaaaaac
caaaaaaaaaaaaaaaaaaaaaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_75278787_75279910
seq2: B6Ng01-127G12.b_46_1166

seq1  GAATTCATGAATAGCCCACAGAGTACAATATAAATACATATGGCAAAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAATAGCCCACAGAGTACAATATAAATACATATGGCAAAGAA  50

seq1  GACAAGGCAGAAGATGTTCAATATCCATTTTTTTCCTAAAACTAGATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGCAGAAGATGTTCAATATCCATTTTTTTCCTAAAACTAGATAAA  100

seq1  GCCGTGTTTATATCTGCAGATGAGAGCTGCCCTCAGCCTCTGTCAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGTTTATATCTGCAGATGAGAGCTGCCCTCAGCCTCTGTCAGAAAA  150

seq1  GCTTCTCTTTGCAGTGGGTGACAGTGCAGAAATTCATAACTGGTCAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCTTTGCAGTGGGTGACAGTGCAGAAATTCATAACTGGTCAAAGC  200

seq1  TCTCACAATAAGCAGTTGCTGAGTGCTTAGCTTTGAATGGGACAACTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAATAAGCAGTTGCTGAGTGCTTAGCTTTGAATGGGACAACTGTA  250

seq1  TCTATCGGGAATATCCCACCAGGCTCAGGAATAATTGTAGAAGAAAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCGGGAATATCCCACCAGGCTCAGGAATAATTGTAGAAGAAAGGGA  300

seq1  AGAAAGAATGTAAAAGCCAGATTGGACGCAGTTCTATGAAACACCGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAATGTAAAAGCCAGATTGGACGCAGTTCTATGAAACACCGCCTT  350

seq1  CTGGATGTCACGTGACAACTGTGCCTATGATGTCGTGATAATGGTGGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGTCACGTGACAACTGTGCCTATGATGTCGTGATAATGGTGGTTA  400

seq1  CTGGCATAAGACTGGGTCTGTCAACCCTGCATCATGGATAGGGCAAGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCATAAGACTGGGTCTGTCAACCCTGCATCATGGATAGGGCAAGGGT  450

seq1  TCAGGAATCCTCCTCCCCGTGAGAAGCTATTGACAGTCAATGGCTTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATCCTCCTCCCCGTGAGAAGCTATTGACAGTCAATGGCTTCTGA  500

seq1  AGGGTGAGGGAAGTTGTTTTCTTCAGTGGTGTAGCCAACTGTTGAGTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAGGGAAGTTGTTTTCTTCAGTGGTGTAGCCAACTGTTGAGTTGC  550

seq1  CTCTACTCCAGCAAATAACCGTCAACCCATGCCTATGCATGCGACTCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACTCCAGCAAATAACCGTCAACCCATGCCTATGCATGCGACTCTAA  600

seq1  GCAAACCTAAACAAAAGAGCACTTCCATGCAAGCAGCATGGCAGTTCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCTAAACAAAAGAGCACTTCCATGCAAGCAGCATGGCAGTTCCAG  650

seq1  CTTTCCAAATTATGTAAAGAAGAGGCAAGCAATGTCTTTTGAAGTATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAATTATGTAAAGAAGAGGCAAGCAATGTCTTTTGAAGTATATA  700

seq1  T-CCTTCCAGCCAAAGTAAAATTTTGGTTGTAATGATAAATAATCCCTAT  749
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCAGCCAAAGTAAAATTTTGGTTGTAATGATAAATAATCCCTAT  750

seq1  ACTTTGCTGTAATTATTACACTTAAAGTGGGCCCTA-TTTTCAGGAGACA  798
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACTTTGCTGTAATTATTACACTTAAAGTGGGCCCTATTTTTCAGGAGACA  800

seq1  GTCTATGGTAAATAACCAACAATGTGACAAGACAAAATAGACTCAGAACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATGGTAAATAACCAACAATGTGACAAGACAAAATAGACTCAGAACA  850

seq1  AGGACCCACAGTAACCCAGAAGAAGCCATTAAATTCACTAAATACTATTC  898
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  AGGACCCACAGTAACCCAGATGAAGCCATTAATTTCACTAAATACTATTC  900

seq1  TAGCAACTGCTAAGAGAATGCCT-CCCTCAAAGTTGCTGTTCTTTCTTGT  947
      |||| ||||||||||| |||||| ||||||||||||||||||||||||||
seq2  TAGC-ACTGCTAAGAG-ATGCCTCCCCTCAAAGTTGCTGTTCTTTCTTGT  948

seq1  CTGTAGATATCACAAAAGGCTTGAACC-ATTCCTGTAGGTGCTAAGGCCT  996
       ||||||||||||||| | |||| ||| ||||||||||||||||||| ||
seq2  -TGTAGATATCACAAAGGCCTTGGACCAATTCCTGTAGGTGCTAAGGTCT  997

seq1  CACTTA-CACGAGGAAAACGCAAAGCCTCACACCTCTAAGTCCCATTGGT  1045
      |||||| |||||||  ||||| ||||||||||||||||||| ||||||||
seq2  CACTTACCACGAGG-GAACGC-AAGCCTCACACCTCTAAGT-CCATTGGT  1044

seq1  TCCCTG-AAGGAGTTTTTTTATTCAAATCATTTTAAATAGTTCTACTTCA  1094
      | |||| ||||||||||||||||| ||||||||| |||||||||||||||
seq2  TTCCTGAAAGGAGTTTTTTTATTCCAATCATTTT-AATAGTTCTACTTCA  1093

seq1  TTTAAGTAAGAAATTCATTCTAAGAGAAAA  1124
      ||| |||||| |||||||||| ||||||||
seq2  TTT-AGTAAG-AATTCATTCTTAGAGAAAA  1121

seq1: chr9_114478924_114478999
seq2: B6Ng01-127G12.g_78_153 (reverse)

seq1  -CTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGACTTCGAGACAGGG  49
        ||||||||||||||||||||||||||||||||||||   |||||||||
seq2  CTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTCGAGAC-AGGAGACAGGG  49

seq1  TTTCTCTGTGTAGCCCCGGCTGTCCTG  76
      ||||||||| |||||| ||||||||||
seq2  TTTCTCTGTATAGCCCTGGCTGTCCTG  76