BAC Information

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BAC

Clone NameB6Ng01-128I08
Chromosome9 (Build37)
Map Location 89,212,452 - 89,357,303
singlet/doubletdoublet
Overlap genenone
Upstream geneNt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
Downstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-128I08.bB6Ng01-128I08.g
ACCDH930349DH930350
length1,131225
definitionDH930349|Mus musculus domesticus DNA, BAC clone: B6Ng01-128I08, 5' end.DH930350|Mus musculus domesticus DNA, BAC clone: B6Ng01-128I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,356,153 - 89,357,303)(89,212,452 - 89,212,676)
sequence
gaattctctaatatcagtcagctctcaattgtttctttctgaactgaaac
cataaaactctcctgcaaacacattgccactagattacctgacattttga
ctcatcaaacatcaccaggctgctcaaatatgaattataaatcatcttcc
agatgactggatgggcagtgtcaaacagctgctttcacagctaggaacag
gacccaggttggtggctgcctcacctcagcagctatgactcagggacaca
acagggaaagcagtcaggatgcaaaaaaaagcagagcaggagcctccttg
aagacagagcagtgtttcttgggagaggtaaagtgttctgtgacatttga
ggtgacaccagccaggatgaggggctgtacagatggcctcccaaccttca
cgctttcttttttctacactgcagtctccaagggaggattaattgctttc
ctctgagattagaatcaacagatgttgctgatttaagacttgatgtaact
ggaagagtgtactgtgaatagcataaaagctaggcttttctgtctctttt
tcctcctcctccctctcccctaccctgtacctcttctcctcaccaaagtg
aagttaaggaagccttcagaaataagccctggtttccattttataggttc
acatgcactctcttatttcaaacaggcattgctgtgtcgctgctgatgct
aactgcctctaggattccttggttttcaggcttgttgcagaaaacaggcc
actgttgccagagttggtactgacatcagggaatgttgacccttctcagc
tacacatagtgaacattttcatgcaggaatcttttgctagagtgatggat
gtgacatctgcctcctgtgtgtatcttcatggcaaacgagaaagagaaag
cgagcaagaattctgggcactagtaaatgaaatttgaagcattcttacaa
agaagctaacagaaacaaaccagtcttcttcttttcttcttctaaacagt
ctgtcttctagtgtgcatcgattacactttgacttgttggcttttactcc
accgcatctgtggggctcattgagctccctaaagcagaccttttgacagg
gactgcactcatcgtgttgtctatatttttg
atgtggaaactgtagtgacacaaaatctgttgtgttcgtctaaaagaaat
ggactgactaaattctgtagaggcccctccagtagagtcatgtcttttcc
tggagcatccctcaacttgagagtggatgtagtgcctagtttccaagacc
aaggaggtttctggcaagctactggcaagaaaaatcaggacatgtcttgg
gtggggggctggtggggagggggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89356153_89357303
seq2: B6Ng01-128I08.b_50_1180 (reverse)

seq1  CAAAAATATAGACACTACCCACGGGTGAAGTTGCAGTTCCTGGTCAAAAT  50
      ||||||||||||||  ||     | |||   |||||| ||| ||||||| 
seq2  CAAAAATATAGACAACAC-----GATGA--GTGCAGTCCCT-GTCAAAAG  42

seq1  ATGTTCCTGCCTCTAGGGGGAGCTC-ATGAGCCCCACAAGGATGGCGTGT  99
       |    ||| || ||  |||||||| ||||||||||||  ||| ||| ||
seq2  GT----CTG-CTTTA--GGGAGCTCAATGAGCCCCACA--GAT-GCG-GT  81

seq1  GGAGTAAAAGCCAACAAGTCAAAGATGTAATCGGATGGCACACTTAGAAG  149
      |||||||||||||||||||||||| ||||||| ||| |||||| ||||||
seq2  GGAGTAAAAGCCAACAAGTCAAAG-TGTAATC-GAT-GCACAC-TAGAAG  127

seq1  ACAGACTGTTTAGAAGAAGAAAAGAAGAAGGCTTGGTTTGTTTTCTGTTA  199
      |||||||||||||||||||||||||||||| | ||||||| |||||||||
seq2  ACAGACTGTTTAGAAGAAGAAAAGAAGAAGAC-TGGTTTG-TTTCTGTTA  175

seq1  GCTTCTTTGT-AGAGTGCTTC-AATTTCATTTACTAGTGCCCAGAATTCT  247
      |||||||||| ||| |||||| ||||||||||||||||||||||||||||
seq2  GCTTCTTTGTAAGAATGCTTCAAATTTCATTTACTAGTGCCCAGAATTCT  225

seq1  TGCTCGCTTTCTCTTTCTCGTTTGCCATG-AGATACACACAGGAGGCAGA  296
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGCTCGCTTTCTCTTTCTCGTTTGCCATGAAGATACACACAGGAGGCAGA  275

seq1  TGTCACATCCATCACTCTAGC-AAAGATTCCTGCATGAAAATGTTCACTA  345
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTCACATCCATCACTCTAGCAAAAGATTCCTGCATGAAAATGTTCACTA  325

seq1  TGTGTAGCTGAGAAGGGTCAACATTCCCTGATGTCAGTACCAACTCTGGC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGCTGAGAAGGGTCAACATTCCCTGATGTCAGTACCAACTCTGGC  375

seq1  AACAGTGGCCTGTTTTCTGCAACAAGCCTGAAAACCAAGGAATCCTAGAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGGCCTGTTTTCTGCAACAAGCCTGAAAACCAAGGAATCCTAGAG  425

seq1  GCAGTTAGCATCAGCAGCGACACAGCAATGCCTGTTTGAAATAAGAGAGT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTAGCATCAGCAGCGACACAGCAATGCCTGTTTGAAATAAGAGAGT  475

seq1  GCATGTGAACCTATAAAATGGAAACCAGGGCTTATTTCTGAAGGCTTCCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGAACCTATAAAATGGAAACCAGGGCTTATTTCTGAAGGCTTCCT  525

seq1  TAACTTCACTTTGGTGAGGAGAAGAGGTACAGGGTAGGGGAGAGGGAGGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCACTTTGGTGAGGAGAAGAGGTACAGGGTAGGGGAGAGGGAGGA  575

seq1  GGAGGAAAAAGAGACAGAAAAGCCTAGCTTTTATGCTATTCACAGTACAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAAAAAGAGACAGAAAAGCCTAGCTTTTATGCTATTCACAGTACAC  625

seq1  TCTTCCAGTTACATCAAGTCTTAAATCAGCAACATCTGTTGATTCTAATC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGTTACATCAAGTCTTAAATCAGCAACATCTGTTGATTCTAATC  675

seq1  TCAGAGGAAAGCAATTAATCCTCCCTTGGAGACTGCAGTGTAGAAAAAAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAAAGCAATTAATCCTCCCTTGGAGACTGCAGTGTAGAAAAAAG  725

seq1  AAAGCGTGAAGGTTGGGAGGCCATCTGTACAGCCCCTCATCCTGGCTGGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCGTGAAGGTTGGGAGGCCATCTGTACAGCCCCTCATCCTGGCTGGT  775

seq1  GTCACCTCAAATGTCACAGAACACTTTACCTCTCCCAAGAAACACTGCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTCAAATGTCACAGAACACTTTACCTCTCCCAAGAAACACTGCTC  825

seq1  TGTCTTCAAGGAGGCTCCTGCTCTGCTTTTTTTTGCATCCTGACTGCTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAAGGAGGCTCCTGCTCTGCTTTTTTTTGCATCCTGACTGCTTT  875

seq1  CCCTGTTGTGTCCCTGAGTCATAGCTGCTGAGGTGAGGCAGCCACCAACC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTTGTGTCCCTGAGTCATAGCTGCTGAGGTGAGGCAGCCACCAACC  925

seq1  TGGGTCCTGTTCCTAGCTGTGAAAGCAGCTGTTTGACACTGCCCATCCAG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTGTTCCTAGCTGTGAAAGCAGCTGTTTGACACTGCCCATCCAG  975

seq1  TCATCTGGAAGATGATTTATAATTCATATTTGAGCAGCCTGGTGATGTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGAAGATGATTTATAATTCATATTTGAGCAGCCTGGTGATGTTT  1025

seq1  GATGAGTCAAAATGTCAGGTAATCTAGTGGCAATGTGTTTGCAGGAGAGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGTCAAAATGTCAGGTAATCTAGTGGCAATGTGTTTGCAGGAGAGT  1075

seq1  TTTATGGTTTCAGTTCAGAAAGAAACAATTGAGAGCTGACTGATATTAGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTTTCAGTTCAGAAAGAAACAATTGAGAGCTGACTGATATTAGA  1125

seq1  GAATTC  1151
      ||||||
seq2  GAATTC  1131

seq1: chr9_89212452_89212676
seq2: B6Ng01-128I08.g_74_298

seq1  ATGTGGAAACTGTAGTGACACAAAATCTGTTGTGTTCGTCTAAAAGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAAACTGTAGTGACACAAAATCTGTTGTGTTCGTCTAAAAGAAAT  50

seq1  GGACTGACTAAATTCTGTAGAGGCCCCTCCAGTAGAGTCATGTCTTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGACTAAATTCTGTAGAGGCCCCTCCAGTAGAGTCATGTCTTTTCC  100

seq1  TGGAGCATCCCTCAACTTGAGAGTGGATGTAGTGCCTAGTTTCCAAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCATCCCTCAACTTGAGAGTGGATGTAGTGCCTAGTTTCCAAGACC  150

seq1  AAGGAGGTTTCTGGCAAGCTACTGGCAAGAAAAATCAGGACATGTCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGTTTCTGGCAAGCTACTGGCAAGAAAAATCAGGACATGTCTTGG  200

seq1  GTGGGGGGCTGGTGGGGAGGGGGAA  225
      |||||||||||||||||||||||||
seq2  GTGGGGGGCTGGTGGGGAGGGGGAA  225