BAC Information

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BAC

Clone NameB6Ng01-129C20
Chromosome9 (Build37)
Map Location 72,061,201 - 72,164,703
singlet/doubletdoublet
Overlap geneSuhw4
Upstream geneLOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970
Downstream geneLOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129C20.bB6Ng01-129C20.g
ACCDH930831DH930832
length1,1261,012
definitionDH930831|Mus musculus domesticus DNA, BAC clone: B6Ng01-129C20, 5' end.DH930832|Mus musculus domesticus DNA, BAC clone: B6Ng01-129C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,061,201 - 72,062,342)(72,163,687 - 72,164,703)
sequence
gaattctggggacttttcagaggctatacaaatgctaaataacctagagg
tgaggtagggtgggctcttggttcttggttgtttgctgttggttgcagtt
tgttaaatagtcctatgcaaagaagaaataaaaataatatattagatatg
ctgacattgaagatcaaagttaccccaaggaattttcctaatcaacagga
agtagtctaaggataacattgccctcttttcctttctatcttgtttttct
ctcctatctagtgttagggggttgcaagagtggaaaaagggtggaaagag
gtggaagaaagaagaacccacaaaatagcaaaaaacaactacatgtgagt
gtctactaattttgatgatatttataaatacttaacagatctgaattgtc
aaagggagagaaagtaatttactgagtagactcatgtgttaggcatcagg
tttcgagatttacagcatttgccaaagcaagtctacaagggagaattcca
gaaataaaattcaggatataaatcttgagtctgtcttgataatgcagact
cagtggttcgggtagagaatgtcttccttcttcaagtgcttgctttcctg
gtttctcagttctatcaagtgactatttgcttaaaaataggagaatatca
taatttaacaggcatctggatatggcattatttcatttctacacatccta
ctttaattctaccaactcactgaagtcaaattatctaccttaaacataga
tctacttatgacactcatctgtctagaaatgtctgtgattcttcactatc
tggtaataaaacacttcattttgttctaacttccagatgtttcacccagg
ccattgccacaaccagtcttgtagactcttttttttttttttttttagat
ttatttattattgtatgtaagtacactgtagctgtcttcagacaccagaa
gagggtgacagatcttatacagatggttgtgagccaccatgtgttgctag
gatttgactcagaccttcagagagcagtcagtgctctacactgagcatct
ctctagcccagtcttgtgactcttattagcgatgttctaggcccagatca
gacttctacgcattaactatttaaat
gaattcaaaattaaaaaaaaaaaaaatcaagctatttctaaagacttttt
ataagactaatagaaataatgctacttttaattttaaggaaatgaggcat
tgtgtggaataagctactatactacactatggaaaatcactcaggagctg
tggctgcaattcagtggtagagcactggcccagcaagcaaatggccctgg
attaaagtgttaagagggagaccagaagaaagaaattacttaaagtatat
gtatgaagtatgtataataatggttattatattaacaaagtactaacctt
atttaaaaccctcctaagggggtggggggaatgacaaaagtctcaggaaa
attagaatttaaaaattctttaattcagtcttccaattaataatggtcac
tattgatggtataccctaaatgttagatctggctttcaggagaagccact
ccatgtgattcttggtatgtgattcttttctgaagctataaaatgaccca
tggaagagtaaggtgtaaatttctactttactatttataaaagataatgg
tttcacaaagatgctcataaattatatacataacaaatgagcaactaatt
actgttttattttctttcatacacaaaaaagacaggatcagagttttaaa
agtagcacaaaattcttgttcataatacctcttcaataatattttagatt
tagatccttaataaaaacagataaagaacaaatggtcaataaaaaccaag
tacagtaaacagagtaaggaattgcttttgaggaaagtcaaaatatcctg
aaacatttaaaatgcaaaaagtacaacttgagaaacaagggactaagttt
agaattaggtttaaacaaacttgtttatttattatatgtaagtacactgt
agttggcttcagacaccccagaagaggcgtcagatctcatttagatggtt
tgaagccaacatgtggttgctgggattgaactcagagagcagtcagtgcc
tctaaccgctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_72061201_72062342
seq2: B6Ng01-129C20.b_46_1171

seq1  GAATTCTGGGGACTTTTCAGAGGCTATACAAATGCTAAATAACCTAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGGACTTTTCAGAGGCTATACAAATGCTAAATAACCTAGAGG  50

seq1  TGAGGTAGGGTGGGCTCTTGGTTCTTGGTTGTTTGCTGTTGGTTGCAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTAGGGTGGGCTCTTGGTTCTTGGTTGTTTGCTGTTGGTTGCAGTT  100

seq1  TGTTAAATAGTCCTATGCAAAGAAGAAATAAAAATAATATATTAGATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAATAGTCCTATGCAAAGAAGAAATAAAAATAATATATTAGATATG  150

seq1  CTGACATTGAAGATCAAAGTTACCCCAAGGAATTTTCCTAATCAACAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATTGAAGATCAAAGTTACCCCAAGGAATTTTCCTAATCAACAGGA  200

seq1  AGTAGTCTAAGGATAACATTGCCCTCTTTTCCTTTCTATCTTGTTTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCTAAGGATAACATTGCCCTCTTTTCCTTTCTATCTTGTTTTTCT  250

seq1  CTCCTATCTAGTGTTAGGGGGTTGCAAGAGTGGAAAAAGGGTGGAAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATCTAGTGTTAGGGGGTTGCAAGAGTGGAAAAAGGGTGGAAAGAG  300

seq1  GTGGAAGAAAGAAGAACCCACAAAATAGCAAAAAACAACTACATGTGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGAAAGAAGAACCCACAAAATAGCAAAAAACAACTACATGTGAGT  350

seq1  GTCTACTAATTTTGATGATATTTATAAATACTTAACAGATCTGAATTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTAATTTTGATGATATTTATAAATACTTAACAGATCTGAATTGTC  400

seq1  AAAGGGAGAGAAAGTAATTTACTGAGTAGACTCATGTGTTAGGCATCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGAGAAAGTAATTTACTGAGTAGACTCATGTGTTAGGCATCAGG  450

seq1  TTTCGAGATTTACAGCATTTGCCAAAGCAAGTCTACAAGGGAGAATTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGATTTACAGCATTTGCCAAAGCAAGTCTACAAGGGAGAATTCCA  500

seq1  GAAATAAAATTCAGGATATAAATCTTGAGTCTGTCTTGATAATGCAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAATTCAGGATATAAATCTTGAGTCTGTCTTGATAATGCAGACT  550

seq1  CAGTGGTTCGGGTAGAGAATGTCTTCCTTCTTCAAGTGCTTGCTTTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTCGGGTAGAGAATGTCTTCCTTCTTCAAGTGCTTGCTTTCCTG  600

seq1  GTTTCTCAGTTCTATCAAGTGACTATTTGCTTAAAAATAGGAGAATATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCAGTTCTATCAAGTGACTATTTGCTTAAAAATAGGAGAATATCA  650

seq1  TAATTTAACAGGCATCTGGATATGGCATTATTTCATTTCTACACATCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAACAGGCATCTGGATATGGCATTATTTCATTTCTACACATCCTA  700

seq1  CTTTAATTCTACCAACTCACTGAAGTCAAATTATCTACCTTAAACATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTCTACCAACTCACTGAAGTCAAATTATCTACCTTAAACATAGA  750

seq1  TCTACTTATGACACTCATCTGTCTAGAAATGTCTGTGATTCTTCACTATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTATGACACTCATCTGTCTAGAAATGTCTGTGATTCTTCACTATC  800

seq1  TGGTAATAAAACACTTCATTTTGTTCTAACTTCCAGATGTTTCACCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATAAAACACTTCATTTTGTTCTAACTTCCAGATGTTTCACCCAGG  850

seq1  CCATTGCCACAACCAGTCTTGTAGACTCTTTTTTTTTTTTTTTTTTAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCCACAACCAGTCTTGTAGACTCTTTTTTTTTTTTTTTTTTAGAT  900

seq1  TTATTTATTATTGTATGTAAGTACACTGTAGCTGTCTTCAGACACCAGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTATTGTATGTAAGTACACTGTAGCTGTCTTCAGACACCAGAA  950

seq1  GAGGGTGACAGATCTTATTACAGATGGTTGTGAGCCACCATGTGGTTGCT  1000
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  GAGGGTGACAGATCTTA-TACAGATGGTTGTGAGCCACCATGT-GTTGCT  998

seq1  AGGATTTGAACTCAGGACCTTCAGAAGAGCAGTCAGTGCTCTTAACCACT  1050
      |||||||| ||||| ||||||||| |||||||||||||||||    ||||
seq2  AGGATTTG-ACTCA-GACCTTCAG-AGAGCAGTCAGTGCTCT---ACACT  1042

seq1  GAGCCATCTCTCTAGCCCCAGTCTTGTAGACTCTTATTAGCAGTGTTCTA  1100
      ||| ||||||||||| ||||||||||| |||||||||||||  |||||||
seq2  GAG-CATCTCTCTAG-CCCAGTCTTGT-GACTCTTATTAGCGATGTTCTA  1089

seq1  GAGCCCAGATCAAGACTTTCTACAGCATTAACATATTTAAAT  1142
      | ||||||||| |||| |||||| |||||||| |||||||||
seq2  G-GCCCAGATC-AGAC-TTCTAC-GCATTAAC-TATTTAAAT  1126

seq1: chr9_72163687_72164703
seq2: B6Ng01-129C20.g_66_1077 (reverse)

seq1  TCAGCGGTTAAGAGCACTGACTGCTCTTCCTGAGTTCAAATCCCAGCAAC  50
      ||||||||||   ||||||||||||||  |||||||| ||||||||||||
seq2  TCAGCGGTTAGAGGCACTGACTGCTCT--CTGAGTTC-AATCCCAGCAAC  47

seq1  CACATGGTGGCTCACAACCATCTATAATGAGATCTGACGCCCTCTTCTGG  100
      |||||| |||||   ||||||||| |||||||||||||| ||||||||||
seq2  CACATGTTGGCTTCAAACCATCTA-AATGAGATCTGACG-CCTCTTCTGG  95

seq1  GGTGTCTGAAGCCAACTACAGTGTACTTACATATAATAAATAAACAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTCTGAAGCCAACTACAGTGTACTTACATATAATAAATAAACAAGTT  145

seq1  TGTTTAAAACCTAATTCTAAACTTAGT-CCTTGTTTCTCAAGTTGTACTT  199
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTTT-AAACCTAATTCTAAACTTAGTCCCTTGTTTCTCAAGTTGTACTT  194

seq1  TTTGCATTTTGAATGTTTCAGGATATTTTGACTTTCCTCAAAAGCAATTC  249
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTTTAAATGTTTCAGGATATTTTGACTTTCCTCAAAAGCAATTC  244

seq1  CTTACTCTGTTTACTGTACTTGGTTTTTATTGACCATTTGTTCTTTATCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTCTGTTTACTGTACTTGGTTTTTATTGACCATTTGTTCTTTATCT  294

seq1  GTTTTTATTAAGGATCTAAATCTAAAATATTATTGAAGAGGTATTATGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTATTAAGGATCTAAATCTAAAATATTATTGAAGAGGTATTATGAA  344

seq1  CAAGAATTTTGTGCTACTTTTAAAACTCTGATCCTGTCTTTTTTGTGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTTTGTGCTACTTTTAAAACTCTGATCCTGTCTTTTTTGTGTAT  394

seq1  GAAAGAAAATAAAACAGTAATTAGTTGCTCATTTGTTATGTATATAATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAATAAAACAGTAATTAGTTGCTCATTTGTTATGTATATAATTT  444

seq1  ATGAGCATCTTTGTGAAACCATTATCTTTTATAAATAGTAAAGTAGAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCATCTTTGTGAAACCATTATCTTTTATAAATAGTAAAGTAGAAAT  494

seq1  TTACACCTTACTCTTCCATGGGTCATTTTATAGCTTCAGAAAAGAATCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACCTTACTCTTCCATGGGTCATTTTATAGCTTCAGAAAAGAATCAC  544

seq1  ATACCAAGAATCACATGGAGTGGCTTCTCCTGAAAGCCAGATCTAACATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAGAATCACATGGAGTGGCTTCTCCTGAAAGCCAGATCTAACATT  594

seq1  TAGGGTATACCATCAATAGTGACCATTATTAATTGGAAGACTGAATTAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTATACCATCAATAGTGACCATTATTAATTGGAAGACTGAATTAAA  644

seq1  GAATTTTTAAATTCTAATTTTCCTGAGACTTTTGTCATTCCCCCCACCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTAAATTCTAATTTTCCTGAGACTTTTGTCATTCCCCCCACCCC  694

seq1  CTTAGGAGGGTTTTAAATAAGGTTAGTACTTTGTTAATATAATAACCATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGAGGGTTTTAAATAAGGTTAGTACTTTGTTAATATAATAACCATT  744

seq1  ATTATACATACTTCATACATATACTTTAAGTAATTTCTTTCTTCTGGTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATACATACTTCATACATATACTTTAAGTAATTTCTTTCTTCTGGTCT  794

seq1  CCCTCTTAACACTTTAATCCAGGGCCATTTGCTTGCTGGGCCAGTGCTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTAACACTTTAATCCAGGGCCATTTGCTTGCTGGGCCAGTGCTCT  844

seq1  ACCACTGAATTGCAGCCACAGCTCCTGAGTGATTTTCCATAGTGTAGTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAATTGCAGCCACAGCTCCTGAGTGATTTTCCATAGTGTAGTAT  894

seq1  AGTAGCTTATTCCACACAATGCCTCATTTCCTTAAAATTAAAAGTAGCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTTATTCCACACAATGCCTCATTTCCTTAAAATTAAAAGTAGCAT  944

seq1  TATTTCTATTAGTCTTATAAAAAGTCTTTAGAAATAGCTTGATTTTTTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTATTAGTCTTATAAAAAGTCTTTAGAAATAGCTTGATTTTTTTT  994

seq1  TTTTTTAATTTTGAATTC  1017
      ||||||||||||||||||
seq2  TTTTTTAATTTTGAATTC  1012