BAC Information

Click to search

BAC

Clone NameB6Ng01-129F14
Chromosome2 (Build37)9 (Build37)
Map Location 10,526,116 - 10,527,15095,562,854 - 95,563,150
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
Downstream geneLOC100040690, LOC100040703, LOC667192, Prkcq, LOC100040733, LOC100040898, LOC667211, Pfkfb3, Rbm17
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-129F14.bB6Ng01-129F14.g
ACCDH930954DH930955
length1,02078
definitionDH930954|Mus musculus domesticus DNA, BAC clone: B6Ng01-129F14, 5' end.DH930955|Mus musculus domesticus DNA, BAC clone: B6Ng01-129F14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,526,116 - 10,527,150)(95,562,854 - 95,563,150)
sequence
gaattcatctattagtcttgtgtgtttacattgtggagatatatttaagt
ttaaacacacaaagctatcatcataaaaaaaaatttctccatgttaccaa
gcagcaggtgtcactaaggtttgccctgggaatgacaataactcttgtga
tatttgagctattttaaaatgcattgtttaagaccagatgaacatttata
ttggcacaggatccatttaagttacaattccccaaacactccgctagctg
gcatttctaaatgtctctcccacatagtaaaacctccaattttttttgca
aatgttttgaaaaaaagtttagcatattgtcccctttgctttctcataaa
ttacagtggctgtgagaggcatttggaatggtgtaatgtgggaataaacc
tgttttgttctttgtaacttgcaaacaatgctaatacttatgaacaaatt
gatctgttccttttaaagtaatgatagcatcatataccacttatcaactg
gacccatttcaagcagacaaccttcatgtgtaaatggcctaagttcactt
agatgaactcagtcctaatagtcctttgtttattcccataagctgaaatg
aaaatgttttataaaacatttaatacacatcgcaatgccaacttgtctca
tcacaaacctaagaatcattcattcatagactaggataagatagttggta
tctgccaagcagggtatgtttttgtacctaccgagtaaggtaggctagac
taaccacattaggaggaataataaccttgtgctcatggctattataagtg
cagaaactatggagaaagaacctggcagacagagtggcaaaataccaaca
gaatggcacctgtcaagggacacttgccctaaatcacacaccacacacac
acaccacacaccaccgagagagagagagagagagagagagagagagagag
agagagagaagagagccatgtgcacatgatgtgctggtcatgcattactg
aactaaaaatactatatggg
cgccctctgagtatcacacatggatcatagtatacagagagaaagagggg
ggaggggagagagagagagagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_10526116_10527150
seq2: B6Ng01-129F14.b_49_1068

seq1  GAATTCATCTATTAGTCTTGTGTGTTTACATTGTGGAGATATATTTAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTATTAGTCTTGTGTGTTTACATTGTGGAGATATATTTAAGT  50

seq1  TTAAACACACAAAGCTATCATCATAAAAAAAAATTTCTCCATGTTACCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACACACAAAGCTATCATCATAAAAAAAAATTTCTCCATGTTACCAA  100

seq1  GCAGCAGGTGTCACTAAGGTTTGCCCTGGGAATGACAATAACTCTTGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGGTGTCACTAAGGTTTGCCCTGGGAATGACAATAACTCTTGTGA  150

seq1  TATTTGAGCTATTTTAAAATGCATTGTTTAAGACCAGATGAACATTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGCTATTTTAAAATGCATTGTTTAAGACCAGATGAACATTTATA  200

seq1  TTGGCACAGGATCCATTTAAGTTACAATTCCCCAAACACTCCGCTAGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACAGGATCCATTTAAGTTACAATTCCCCAAACACTCCGCTAGCTG  250

seq1  GCATTTCTAAATGTCTCTCCCACATAGTAAAACCTCCAATTTTTTTTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCTAAATGTCTCTCCCACATAGTAAAACCTCCAATTTTTTTTGCA  300

seq1  AATGTTTTGAAAAAAAGTTTAGCATATTGTCCCCTTTGCTTTCTCATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTTGAAAAAAAGTTTAGCATATTGTCCCCTTTGCTTTCTCATAAA  350

seq1  TTACAGTGGCTGTGAGAGGCATTTGGAATGGTGTAATGTGGGAATAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTGGCTGTGAGAGGCATTTGGAATGGTGTAATGTGGGAATAAACC  400

seq1  TGTTTTGTTCTTTGTAACTTGCAAACAATGCTAATACTTATGAACAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTCTTTGTAACTTGCAAACAATGCTAATACTTATGAACAAATT  450

seq1  GATCTGTTCCTTTTAAAGTAATGATAGCATCATATACCACTTATCAACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTTCCTTTTAAAGTAATGATAGCATCATATACCACTTATCAACTG  500

seq1  GACCCATTTCAAGCAGACAACCTTCATGTGTAAATGGCCTAAGTTCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATTTCAAGCAGACAACCTTCATGTGTAAATGGCCTAAGTTCACTT  550

seq1  AGATGAACTCAGTCCTAATAGTCCTTTGTTTATTCCCATAAGCTGAAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAACTCAGTCCTAATAGTCCTTTGTTTATTCCCATAAGCTGAAATG  600

seq1  AAAATGTTTTATAAAACATTTAATACACATCGCAATGCCAACTTGTCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTTATAAAACATTTAATACACATCGCAATGCCAACTTGTCTCA  650

seq1  TCACAAACCTAAGAATCATTCATTCATAGACTAGGATAAGATAGTTGGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACCTAAGAATCATTCATTCATAGACTAGGATAAGATAGTTGGTA  700

seq1  TCTGCCAAGCAGGGTATGTTTTTGTACCTACCGAGTAAGGTAGGCTAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAAGCAGGGTATGTTTTTGTACCTACCGAGTAAGGTAGGCTAGAC  750

seq1  TAACCACATTAGGAGGAATAATAACCTTGTGCTCATGGCTATTATAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCACATTAGGAGGAATAATAACCTTGTGCTCATGGCTATTATAAGTG  800

seq1  CAGAAACTATGGAGAAAGAACCTGGCAGACAGAGTGGCAAAATACCAACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTATGGAGAAAGAACCTGGCAGACAGAGTGGCAAAATACCAACA  850

seq1  GAATGGCACCTGTCAAGGGACACTTGCCCTAAAATCAACACACACACACA  900
      ||||||||||||||||||||||||||||||||    | ||||||| ||||
seq2  GAATGGCACCTGTCAAGGGACACTTGCCCTAA----ATCACACAC-CACA  895

seq1  CACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  950
      ||||||||| ||||||| ||| ||||||||||||||||||||||||||||
seq2  CACACACAC-CACACAC-CACCGAGAGAGAGAGAGAGAGAGAGAGAGAGA  943

seq1  GAGAGAGAGAGAGAGAGAGAGAGTCGCATGTGCACATGATGTGCATGTTC  1000
      |||||||||||||||| ||||||   |||||||||||||||||| || ||
seq2  GAGAGAGAGAGAGAGA-AGAGAG--CCATGTGCACATGATGTGC-TGGTC  989

seq1  ATGCAATTACTGACATAATAAAATACTATTATGGG  1035
      |||| ||||||||  ||  ||||||||| ||||||
seq2  ATGC-ATTACTGAACTA--AAAATACTA-TATGGG  1020

seq1: chr9_95562854_95563150
seq2: B6Ng01-129F14.g_111_154 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCTCTCTCTCTCCTCCTCCTCCTCCTCCTCCCCCTCCTCCCCCCTCCTCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCCCCCTCCCCCCTCTCTCTGGCTCTGTCTCTCTCTCTCTCTCTTTCTCT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTCCTCCTCTTCCTCCTCTTCCTCCTCCTCCCCCTCCTCCCCCTCTTT  200
                                                        
seq2  --------------------------------------------------  0

seq1  CTGGCTCTGGCTCTCTCTCTCTCTCTCTCTCTCTCCTCCTCCTCCTCCTC  250
                   |||||||||||||||||||||                
seq2  -------------TCTCTCTCTCTCTCTCTCTCT----------------  21

seq1  CCCCTCCTCCCCCCTCCTCCTCCCCCTCCCCCCTCTTTCTGGCTCTG  297
                            ||||||||||||||||||  |||||
seq2  ----------------------CCCCTCCCCCCTCTTTCT--CTCTG  44