BAC Information

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BAC

Clone NameB6Ng01-131F17
Chromosome9 (Build37)
Map Location 111,884,923 - 112,030,091
singlet/doubletdoublet
Overlap geneArpp21
Upstream geneLrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac, 4930545L08Rik
Downstream geneLOC100039341, LOC620760, LOC100043800, EG622110, LOC100039391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131F17.bB6Ng01-131F17.g
ACCDH932434DH932435
length1,158583
definitionDH932434|Mus musculus domesticus DNA, BAC clone: B6Ng01-131F17, 5' end.DH932435|Mus musculus domesticus DNA, BAC clone: B6Ng01-131F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,028,913 - 112,030,091)(111,884,923 - 111,885,505)
sequence
gaattcctcttgggtgtgcttttactttaggctattttcagagattctac
gagagtgctctttctccctgcaggaaagacagtgagaccctcaactgagc
ccaggcttatgtatggctttatttcaggtcagccctttgtgaacccggat
ggaacgcctgcgatatacaaccctcccggaagtcagcagacactgcgtgg
cactgttggtgggcagccccagcaacctccacagcagcaaccttcgcctc
agcctcagcagcaggtccaggcatcacagccccagatggcagggccactg
gtcactcaggtgaggagctggcctaaagatgagggccacaatagggttca
ggtcagcaatctatctaggagaaaagatacggcgtgtcacttcccatcac
gcttataggtaaaatcttccagagtataatcgtcactggacaaaagagta
tctgcttatacccaatgcaagtgtctactgggtgagagcagatactaggg
aaaacggatgcacagttgcttgggtctaagtattgtttgtagcaaagcaa
attataatcccttctaggactttgagttaattcaccccctcccaccacag
atcaaacactcatgtctacataatcagcactgccctttccttcagtggga
agagcagagatcgccaagtcccagctgacctggatgttcatctctgggct
cctgtgaaaggtgcagagatgccctcctttcccagggaggcacaatcaac
cctgatgtgttctaagcaggctccctgggggagtcttcttttttatgtgc
tttcacttcttagttcttgagcaacacatgtctgtaagttcagagcaccc
aaccaactcaagtgcccgacacttcaaggcaggcttccggagctcctctc
aagaccaagccatctggctctgcatacacagctttcctctctacactgaa
tgatctggggagcctctaatgacagcaatgcccttcccatgggatggatt
cagcccccacacctctacctgatcaggttttctccctcagctgtcagagc
ctgcaggcatcctccagtctggtgcaatattcagacgatcttttcctccc
cacactcctgctatgtcggcaacgagaactccttgggatatatctaagca
taaccaca
gaattcaccttggagcagagatttaaatgaagcccggatgcaagccttgg
aggactgggaggaaaagaaggtggctcctcttcttcccatgtctgccctt
ctagaggcaaaacccacatcagagaagtactgggactatttcttctcatt
caaacttcctttttgttgcttgagtttgtttccagcatccagatcaggct
gctcccaaatgcctgcaacgtcagccacagggcaccggacaccttcttct
ggccactgcagggaagttagggaggtgtctctggtcctcctgcactgcac
actcctgtggtcggtttcttctgatctctcagttatccagctaagttgat
tctctccagctttttgcttactttgctgtgcgggactctattgccttcta
acagaggaactggtaaagactgtgctgttgatacttcaagctttgttggg
gcagctgacaactgtaaatggtaagtatttacagaagccttgttttgata
tgtatgtactctgaagcgactcaagagtaagttaacatccctgcccgtgt
gtgtgtgtgtgtatgtgtgtgtgtaggtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_112028913_112030091
seq2: B6Ng01-131F17.b_48_1205 (reverse)

seq1  TGTGTGTTATGCTTATGATACTATACCAAGGGGAAGTGCTGCGTTGGCGA  50
      |||| |||||||||| |||| ||| ||||||   ||| || ||||| |||
seq2  TGTG-GTTATGCTTA-GATA-TATCCCAAGG---AGTTCT-CGTTGCCGA  43

seq1  CATAGGCAGGAGATGCTGGGGAGGAAAAGAGACCGCTGGATATTGCA-CA  99
      |||| ||||||| || ||||||||||||||  |  ||| |||||||| ||
seq2  CATA-GCAGGAG-TG-TGGGGAGGAAAAGA-TCGTCTGAATATTGCACCA  89

seq1  GACTGGGAAGATGGCTGCAGGCTCTGGACAGACTGGAGGGAAGAAAACAC  149
      |||| ||| |||| ||||||||||| ||||| || ||||| ||||||| |
seq2  GACT-GGAGGATGCCTGCAGGCTCT-GACAG-CT-GAGGG-AGAAAAC-C  133

seq1  TGATCAGGTAAGAGTGTGGGGGCCTGAAATCCCATCCCATGGGAAGGGCA  199
      ||||||||||   ||||||||| |||||   |||||||||||||||||||
seq2  TGATCAGGTAGAGGTGTGGGGG-CTGAA--TCCATCCCATGGGAAGGGCA  180

seq1  TTGCTGTCATTAAGAGGCTCCCCAAGATCATTCAGTGTAGAGAGGAAAGC  249
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  TTGCTGTCATT-AGAGGCTCCCC-AGATCATTCAGTGTAGAGAGGAAAGC  228

seq1  TGTGTATGCAGAGCCAGATGGCTTGGTCTTGAG-GGGGCTCCGGAAAGCC  298
      ||||||||||||||||||||||||||||||||| || ||||||| |||||
seq2  TGTGTATGCAGAGCCAGATGGCTTGGTCTTGAGAGGAGCTCCGG-AAGCC  277

seq1  TGCCTTGAAGTGTCGGGCACTTGAGTTGGTTGGGTGCTCTGAACTTACAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGAAGTGTCGGGCACTTGAGTTGGTTGGGTGCTCTGAACTTACAG  327

seq1  ACATGTGTTGCTCAAGAACTAAGAAGTGAAAGCACATAAAAAAGAAGACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGTTGCTCAAGAACTAAGAAGTGAAAGCACATAAAAAAGAAGACT  377

seq1  CCCCCAGGGAGCCTGCTTAGAACACATCAGGGTTGATTGTGCCTCCCTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCAGGGAGCCTGCTTAGAACACATCAGGGTTGATTGTGCCTCCCTGG  427

seq1  GAAAGGAGGGCATCTCTGCACCTTTCACAGGAGCCCAGAGATGAACATCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGGGCATCTCTGCACCTTTCACAGGAGCCCAGAGATGAACATCC  477

seq1  AGGTCAGCTGGGACTTGGCGATCTCTGCTCTTCCCACTGAAGGAAAGGGC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGCTGGGACTTGGCGATCTCTGCTCTTCCCACTGAAGGAAAGGGC  527

seq1  AGTGCTGATTATGTAGACATGAGTGTTTGATCTGTGGTGGGAGGGGGTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGATTATGTAGACATGAGTGTTTGATCTGTGGTGGGAGGGGGTGA  577

seq1  ATTAACTCAAAGTCCTAGAAGGGATTATAATTTGCTTTGCTACAAACAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCAAAGTCCTAGAAGGGATTATAATTTGCTTTGCTACAAACAAT  627

seq1  ACTTAGACCCAAGCAACTGTGCATCCGTTTTCCCTAGTATCTGCTCTCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGACCCAAGCAACTGTGCATCCGTTTTCCCTAGTATCTGCTCTCAC  677

seq1  CCAGTAGACACTTGCATTGGGTATAAGCAGATACTCTTTTGTCCAGTGAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGACACTTGCATTGGGTATAAGCAGATACTCTTTTGTCCAGTGAC  727

seq1  GATTATACTCTGGAAGATTTTACCTATAAGCGTGATGGGAAGTGACACGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATACTCTGGAAGATTTTACCTATAAGCGTGATGGGAAGTGACACGC  777

seq1  CGTATCTTTTCTCCTAGATAGATTGCTGACCTGAACCCTATTGTGGCCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTTTTCTCCTAGATAGATTGCTGACCTGAACCCTATTGTGGCCCT  827

seq1  CATCTTTAGGCCAGCTCCTCACCTGAGTGACCAGTGGCCCTGCCATCTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTAGGCCAGCTCCTCACCTGAGTGACCAGTGGCCCTGCCATCTGG  877

seq1  GGCTGTGATGCCTGGACCTGCTGCTGAGGCTGAGGCGAAGGTTGCTGCTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGATGCCTGGACCTGCTGCTGAGGCTGAGGCGAAGGTTGCTGCTG  927

seq1  TGGAGGTTGCTGGGGCTGCCCACCAACAGTGCCACGCAGTGTCTGCTGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTTGCTGGGGCTGCCCACCAACAGTGCCACGCAGTGTCTGCTGAC  977

seq1  TTCCGGGAGGGTTGTATATCGCAGGCGTTCCATCCGGGTTCACAAAGGGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGGGAGGGTTGTATATCGCAGGCGTTCCATCCGGGTTCACAAAGGGC  1027

seq1  TGACCTGAAATAAAGCCATACATAAGCCTGGGCTCAGTTGAGGGTCTCAC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGAAATAAAGCCATACATAAGCCTGGGCTCAGTTGAGGGTCTCAC  1077

seq1  TGTCTTTCCTGCAGGGAGAAAGAGCACTCTCGTAGAATCTCTGAAAATAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCCTGCAGGGAGAAAGAGCACTCTCGTAGAATCTCTGAAAATAG  1127

seq1  CCTAAAGTAAAAGCACACCCAAGAGGAATTC  1179
      |||||||||||||||||||||||||||||||
seq2  CCTAAAGTAAAAGCACACCCAAGAGGAATTC  1158

seq1: chr9_111884923_111885505
seq2: B6Ng01-131F17.g_71_653

seq1  GAATTCACCTTGGAGCAGAGATTTAAATGAAGCCCGGATGCAAGCCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTTGGAGCAGAGATTTAAATGAAGCCCGGATGCAAGCCTTGG  50

seq1  AGGACTGGGAGGAAAAGAAGGTGGCTCCTCTTCTTCCCATGTCTGCCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGGGAGGAAAAGAAGGTGGCTCCTCTTCTTCCCATGTCTGCCCTT  100

seq1  CTAGAGGCAAAACCCACATCAGAGAAGTACTGGGACTATTTCTTCTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGGCAAAACCCACATCAGAGAAGTACTGGGACTATTTCTTCTCATT  150

seq1  CAAACTTCCTTTTTGTTGCTTGAGTTTGTTTCCAGCATCCAGATCAGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCCTTTTTGTTGCTTGAGTTTGTTTCCAGCATCCAGATCAGGCT  200

seq1  GCTCCCAAATGCCTGCAACGTCAGCCACAGGGCACCGGACACCTTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCAAATGCCTGCAACGTCAGCCACAGGGCACCGGACACCTTCTTCT  250

seq1  GGCCACTGCAGGGAAGTTAGGGAGGTGTCTCTGGTCCTCCTGCACTGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACTGCAGGGAAGTTAGGGAGGTGTCTCTGGTCCTCCTGCACTGCAC  300

seq1  ACTCCTGTGGTCGGTTTCTTCTGATCTCTCAGTTATCCAGCTAAGTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTGGTCGGTTTCTTCTGATCTCTCAGTTATCCAGCTAAGTTGAT  350

seq1  TCTCTCCAGCTTTTTGCTTACTTTGCTGTGCGGGACTCTATTGCCTTCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGCTTTTTGCTTACTTTGCTGTGCGGGACTCTATTGCCTTCTA  400

seq1  ACAGAGGAACTGGTAAAGACTGTGCTGTTGATACTTCAAGCTTTGTTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGAACTGGTAAAGACTGTGCTGTTGATACTTCAAGCTTTGTTGGG  450

seq1  GCAGCTGACAACTGTAAATGGTAAGTATTTACAGAAGCCTTGTTTTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGACAACTGTAAATGGTAAGTATTTACAGAAGCCTTGTTTTGATA  500

seq1  TGTATGTACTCTGAAGCGACTCAAGAGTAAGTTAACATCCCTGCCCGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTACTCTGAAGCGACTCAAGAGTAAGTTAACATCCCTGCCCGTGT  550

seq1  GTGTGTGTGTGTATGTGTGTGTGTAGGTGTGTG  583
      |||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTATGTGTGTGTGTAGGTGTGTG  583