BAC Information

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BAC

Clone NameB6Ng01-131J05
Chromosome9 (Build37)
Map Location 113,415,224 - 113,548,562
singlet/doubletdoublet
Overlap geneLOC100043802, LOC636680
Upstream geneEG622110, LOC100039391, LOC100043801
Downstream genePdcd6ip, Clasp2, Ubp1, Fbxl2, Susd5, EG665719, 4921528I07Rik, Bcl2a1c, 4930520O04Rik, Crtap, Glb1, Ccr4, Trim71, LOC100043808, Cnot10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-131J05.bB6Ng01-131J05.g
ACCDH932598DH932599
length8401,137
definitionDH932598|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J05, 5' end.DH932599|Mus musculus domesticus DNA, BAC clone: B6Ng01-131J05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,547,724 - 113,548,562)(113,415,224 - 113,416,371)
sequence
gaattctgtatcacatctcaccatcaggccagaataagccattcttgaac
tgcaaagtgaacagaccattgtatgcagacagggctttgggccaaagttc
caaagactgtcatcagagctccagctccaggactttttgtaagattttgc
catgcgagcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgta
gattcacaagtatgtacgagccagtggaagccagccattgagctcaggtg
tcttccatgattggttgccaccatatactttgagacagggcttctcactg
aagctagaacatactgactggttagactgcctggccagcaaactccagag
atccacccacctctgtctccttagtgctaggtttataggagcttgactgt
gtctgaactttccatgggtcacgaccacgagaacagagattctccaaagt
ttgtagcaagcactcaaccagttgagttaatttccccagacccttgtcta
agttcttattttggttagagttggagatagtgccttccagactcttcctg
gctcattttctgttattcagcagagatgtagatgagacagtgagtacctc
ccagcctctgtgtgatggcctaaaagagattgcagccacttttggtaagg
ggcaggaagctgctgcgggtaccaggctctgagggagggcgtcaatggcg
ggatggagcctgctcagggagactctgctctgaagtgacaggaagggtca
caaggtctacccgagggctggactgctttctaacatacaggttcagtgtg
attttctttcctcatggggcagagaggtaccgttagcatg
gaattctaattccagggagaatctgaggggtaaaatttgtgcagattttt
ggagatcattggatctcgaatatttttctgcccatcagacacataccgca
atggtagtttctgcttctcgtttctcttaatgtgagaactgtagaaattg
agccttttctattaacatactgatgctagtgatttatcaaattagcacag
aggttaatggcataaacaggttttggtttcaactcctagaacatcattca
attaggtatttgaccttgggggaaaaaaacccttaatctctcccccctta
cttttctcttctgcaaaatcaacttaatgatagtttctgtgttttgaaga
gttaatgagttaaacatcacacagcaatttgcataacaccaggtacattg
gtaagggctgatttataaacgttcaatgttattccctacgctttgccgtt
agtctgcctttttattatttcaactcctagcagtaccacaaagagataaa
gcacagaatagcaatgaagaaagatgaggcaggaccactggccctgtagc
tgagctacaaacccttactttgttgtgaggacaacaggagctactggggg
tttcttggcctacactagtctcaaattaatgggcagacagacgcccccag
agtggtggcccccaaccacagcacctcctcacctaagacttctgtttgct
gcacatctcggcaagtagaggacattccaaagtcctggcccaggccctgg
cctgagggctgcccacctgcatctgggcactctacaactatctaagacgt
tattcgtttgtttccgggctagaatctcgtgttcccccagcagactgcag
aatctacaaaaacggaagatgatgtcctagacatgactatgcccagcacc
tgcagtagatcctgacacacaccaactggtgacgcatgcgtgttgaataa
gtaatgtccatttctatgaacagtagccctgtgcctactgggaaatgtat
aatttacaggaaactttatgcgtcctgagcacgctatatccaatacttaa
aatgaatgcttgtgaaccaagggccttaatcacgtgactgaggactatct
gcatttgaaaaaaacccacagaaacctgtgtggccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_113547724_113548562
seq2: B6Ng01-131J05.b_44_883 (reverse)

seq1  CATGCTAACGGTACCTCTCTGCCCCATGAGGAAAGAAAGTCACACTGGAC  50
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  CATGCTAACGGTACCTCTCTGCCCCATGAGGAAAGAAAATCACACTGAAC  50

seq1  CTGTATGTTAGAAAGCAGTCCAGCCCTCGGGTAGACCTTGTGACCCTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGTTAGAAAGCAGTCCAGCCCTCGGGTAGACCTTGTGACCCTTCC  100

seq1  TGTCACTTCAGAGCAGAGTCTCCCTGAGCAGGCTCCATCCCGCCATTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTTCAGAGCAGAGTCTCCCTGAGCAGGCTCCATCCCGCCATTGAC  150

seq1  GCCCTCCCTCAGAGCCTGGTACCCGCAGCAGCTTCCTGCCCCTTACC-AA  199
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCCCTCCCTCAGAGCCTGGTACCCGCAGCAGCTTCCTGCCCCTTACCAAA  200

seq1  AGTGGCTGCAATCTCTTTTAGGCCATCACACAGAGGCTGGGAGGTACTCA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGCAATCTCTTTTAGGCCATCACACAGAGGCTGGGAGGTACTCA  250

seq1  CTGTCTCATCTACATCTCTGCTGAATAACAGAAAATGAGCCAGGAAGAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCATCTACATCTCTGCTGAATAACAGAAAATGAGCCAGGAAGAGT  300

seq1  CTGGAAGGCACTATCTCCAACTCTAACCAAAATAAGAACTTAGACAAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGCACTATCTCCAACTCTAACCAAAATAAGAACTTAGACAAGGG  350

seq1  TCTGGGGAAATTAACTCAACTGGTTGAGTGCTTGCTACAAACTTTGGAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGGAAATTAACTCAACTGGTTGAGTGCTTGCTACAAACTTTGGAGA  400

seq1  ATCTCTGTTCTCGTGGTCGTGACCCATGGAAAGTTCAGACACAGTCAAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTTCTCGTGGTCGTGACCCATGGAAAGTTCAGACACAGTCAAGC  450

seq1  TCCTATAAACCTAGCACTAAGGAGACAGAGGTGGGTGGATCTCTGGAGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATAAACCTAGCACTAAGGAGACAGAGGTGGGTGGATCTCTGGAGTT  500

seq1  TGCTGGCCAGGCAGTCTAACCAGTCAGTATGTTCTAGCTTCAGTGAGAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCCAGGCAGTCTAACCAGTCAGTATGTTCTAGCTTCAGTGAGAAG  550

seq1  CCCTGTCTCAAAGTATATGGTGGCAACCAATCATGGAAGACACCTGAGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCAAAGTATATGGTGGCAACCAATCATGGAAGACACCTGAGCT  600

seq1  CAATGGCTGGCTTCCACTGGCTCGTACATACTTGTGAATCTACACACACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTGGCTTCCACTGGCTCGTACATACTTGTGAATCTACACACACA  650

seq1  CACACACACACACACACACACACACACACATGCTCGCATGGCAAAATCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACATGCTCGCATGGCAAAATCTT  700

seq1  ACAAAAAGTCCTGGAGCTGGAGCTCTGATGACAGTCTTTGGAACTTTGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAGTCCTGGAGCTGGAGCTCTGATGACAGTCTTTGGAACTTTGGC  750

seq1  CCAAAGCCCTGTCTGCATACAATGGTCTGTTCACTTTGCAGTTCAAGAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCCCTGTCTGCATACAATGGTCTGTTCACTTTGCAGTTCAAGAAT  800

seq1  GGCTTATTCTGGCCTGATGGTGAGATGTGATACAGAATTC  839
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATTCTGGCCTGATGGTGAGATGTGATACAGAATTC  840

seq1: chr9_113415224_113416371
seq2: B6Ng01-131J05.g_69_1205

seq1  GAATTCTAATTCCAGGGAGAATCTGAGGGGTAAAATTTGTGCAGATTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAATTCCAGGGAGAATCTGAGGGGTAAAATTTGTGCAGATTTTT  50

seq1  GGAGATCATTGGATCTCGAATATTTTTCTGCCCATCAGACACATACCGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCATTGGATCTCGAATATTTTTCTGCCCATCAGACACATACCGCA  100

seq1  ATGGTAGTTTCTGCTTCTCGTTTCTCTTAATGTGAGAACTGTAGAAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGTTTCTGCTTCTCGTTTCTCTTAATGTGAGAACTGTAGAAATTG  150

seq1  AGCCTTTTCTATTAACATACTGATGCTAGTGATTTATCAAATTAGCACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTTCTATTAACATACTGATGCTAGTGATTTATCAAATTAGCACAG  200

seq1  AGGTTAATGGCATAAACAGGTTTTGGTTTCAACTCCTAGAACATCATTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAATGGCATAAACAGGTTTTGGTTTCAACTCCTAGAACATCATTCA  250

seq1  ATTAGGTATTTGACCTTGGGGGAAAAAAACCCTTAATCTCTCCCCCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGTATTTGACCTTGGGGGAAAAAAACCCTTAATCTCTCCCCCCTTA  300

seq1  CTTTTCTCTTCTGCAAAATCAACTTAATGATAGTTTCTGTGTTTTGAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCTTCTGCAAAATCAACTTAATGATAGTTTCTGTGTTTTGAAGA  350

seq1  GTTAATGAGTTAAACATCACACAGCAATTTGCATAACACCAGGTACATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGAGTTAAACATCACACAGCAATTTGCATAACACCAGGTACATTG  400

seq1  GTAAGGGCTGATTTATAAACGTTCAATGTTATTCCCTACGCTTTGCCGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGGCTGATTTATAAACGTTCAATGTTATTCCCTACGCTTTGCCGTT  450

seq1  AGTCTGCCTTTTTATTATTTCAACTCCTAGCAGTACCACAAAGAGATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCCTTTTTATTATTTCAACTCCTAGCAGTACCACAAAGAGATAAA  500

seq1  GCACAGAATAGCAATGAAGAAAGATGAGGCAGGACCACTGGCCCTGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAATAGCAATGAAGAAAGATGAGGCAGGACCACTGGCCCTGTAGC  550

seq1  TGAGCTACAAACCCTTACTTTGTTGTGAGGACAACAGGAGCTACTGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTACAAACCCTTACTTTGTTGTGAGGACAACAGGAGCTACTGGGGG  600

seq1  TTTCTTGGCCTACACTAGTCTCAAATTAATGGGCAGACAGACGCCCCCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGGCCTACACTAGTCTCAAATTAATGGGCAGACAGACGCCCCCAG  650

seq1  AGTGGTGGCCCCCAACCACAGCACCTCCTCACCTAAGACTTCTGTTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGCCCCCAACCACAGCACCTCCTCACCTAAGACTTCTGTTTGCT  700

seq1  GCACATCTCGGCAAGTAGAGGACATTCCAAAGTCCTGGCCCAGGCCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCTCGGCAAGTAGAGGACATTCCAAAGTCCTGGCCCAGGCCCTGG  750

seq1  CCTGAGGGCTGCCCACCTGCATCTGGGCACTCTACAACTATCTAAGACGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGGCTGCCCACCTGCATCTGGGCACTCTACAACTATCTAAGACGT  800

seq1  TATTCGTTTGTTTCCGGGCTAGAATCTCGTGTTCCCCCAGCAGACTGCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCGTTTGTTTCCGGGCTAGAATCTCGTGTTCCCCCAGCAGACTGCAG  850

seq1  AATCTACAAAAACGGAAGATGATGTCCTAGACATGACTATGCCCAGCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACAAAAACGGAAGATGATGTCCTAGACATGACTATGCCCAGCACC  900

seq1  TGCAGTAGATCCTGACACACACCAACTGGTGACGCATGCGTGTTGAATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTAGATCCTGACACACACCAACTGGTGACGCATGCGTGTTGAATAA  950

seq1  GTAAATGTCCATTTCTATGAACAGTGAGCCCTGGTGCCTACTGGGAAATG  1000
      || |||||||||||||||||||||| |||||| |||||||||||||||||
seq2  GT-AATGTCCATTTCTATGAACAGT-AGCCCT-GTGCCTACTGGGAAATG  997

seq1  TATAATTTACAGGAAACTTTATGCGTCCTGAGCACGCTATTATCCCATTA  1050
      ||||||||||||||||||||||||||||||||||||||| ||| ||| ||
seq2  TATAATTTACAGGAAACTTTATGCGTCCTGAGCACGCTA-TAT-CCAATA  1045

seq1  CTAAAAATGAATGCTTGTAGAACCAAGGGGCTTTAATCACGTGACTGAAG  1100
      || ||||||||||||||| ||||||| |||| |||||||||||||||| |
seq2  CTTAAAATGAATGCTTGT-GAACCAA-GGGCCTTAATCACGTGACTGAGG  1093

seq1  ACATATCTGCATTTGAAAGAAAACCACACAGAAACCTGTGTCTGCCAG  1148
      || ||||||||||||||| |||||| |||||||||||||||  |||||
seq2  AC-TATCTGCATTTGAAA-AAAACC-CACAGAAACCTGTGT-GGCCAG  1137