BAC Information

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BAC

Clone NameB6Ng01-132P11
Chromosome9 (Build37)
Map Location 5,461,191 - 5,499,453
singlet/doubletdoublet
Overlap genenone
Upstream geneGria4, EG664889, Casp1, Casp4, Casp12
Downstream geneLOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-132P11.bB6Ng01-132P11.g
ACCDH933639DH933640
length1,1421,045
definitionDH933639|Mus musculus domesticus DNA, BAC clone: B6Ng01-132P11, 5' end.DH933640|Mus musculus domesticus DNA, BAC clone: B6Ng01-132P11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,498,301 - 5,499,453)(5,461,191 - 5,462,221)
sequence
gaattctggttcatgtaatttatttatttattttttgtttgtttgtttgt
ttttgtttttgtttttttagctattaaagtatggactcttcaatcctttt
gaagaccgttttaaatctcaatgtctttgcatatctttatcagaaatagt
tggatgacatttcaaggaacattggtctaatattctgagcagatattctg
cttactaattctagagagtgagagggtagacaagggataattccctaaaa
tgacttgagtgtaatacaatcaaatggcttagttctgtgtgcaagcatta
atatgatcatttaaacaaaagatatcttctcagcgaaagcaagggttctt
ccaagtttactgtgtaagttaataaagatgggtctacacaaatgggaatc
acctgcatctaaaccacagcaagaaaatagcacacaagggagtctccgat
tctcaactatatattgatatataatccagattagtcttgaactctccaga
atcaggattacttatgtctgacattaagtaaacaaaagcaagaggtgctt
ttgttgtctgtattttctttctttaaaactttgttcttcagtgaggaaga
cctgatgactggtgaatatcttctgtgatatcacacatatctctatcaat
atatctaactatatatctctatatatacataaacatacacacacacacaa
acacacacacacagagcaaaagagagagaaagagagagacaaacagagac
cgacagacacagatagacagacagactctccagggaggaagttatgagaa
aggttttgtgattatcataatctaatttagtttactgaatggtggctcca
tttttcttattaatgctgaaagctcaatctctcctatttccaaatcctca
tttccaaagctttgtgtattttcccaccctgaccaccagggctcgctagg
aactagagcgcatttctgtgtgcagtagactggcagtgttactgggtggg
agactttctcagctataagagaaagagactacagaagacagaaagtaaga
gtaacaaaacatcacctgcaccatactggagtattgacttcttcacctgc
tgattaggttgcctgttctgtttgagtactagcttacatact

gaattctttataaatattggatgttagccctctattggacataaggttgg
caaagatctttactgaatctgctggttgccattttttcctattgacagtg
tcctttgccttacagaaccttttcaattttatgaggtcccatttgtctat
tattgactttagggcaaaagtcattggtgttctgttcagtaaaatatcct
ctgtgcccatgtgttcgaggttcttccctactttattttctattagtttc
agtttatctggttttatgtggatgtccttaatccacttgaacttcaactt
tgtataggaagatgagaatggatttgtgtgcaatcttctgcatgataact
gccagttgaaccaacatcatttgttgaaaatgctgtcttttttccactgg
atggttttagctcctttgtcaaaacaaatatgtagttaccatacgtgtgt
gggttcatttctgggtcttcaattctattccattctttgtcacttttaat
attctttctttgttctgtagattgagaattaaatattaataaaatagtcc
ttcagtaagtttgctgcccacctcagaactctatgtttccgaatgaaaga
catacatacagcttttatatagtaataggccttacacagcacaatagctg
gacttttgcctacccccatgcagttaatctctagttattacttactaatt
ctatgttctatcttggctgtcctggacacagttgtctaaccttctgggcc
gtggtcataagctccttcacacggaggctgactccctgtcctgccatcat
ctcacgtattgtggatctcctctcttccacattcttctggcttggctgaa
ccgcttcttcctctctcctctgggttctcagcctaggaatccaaaaaccc
ctcctttctgtcagtcatttccagctattggctgttacatctttattacc
atcagatccaactggggaaaagttcccagagctagtacagatgttctgtg
caaaccatttttggtggaactactagcatagaatacagcagctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5498301_5499453
seq2: B6Ng01-132P11.b_46_1187 (reverse)

seq1  AGTATGTAGCCTAGTACTCAAAACAGATATTTAGGCAACTAATATCAGCA  50
      ||||||||  ||||||||| |||||||     |||||||  | |||||||
seq2  AGTATGTAAGCTAGTACTC-AAACAGA---ACAGGCAACCTA-ATCAGCA  45

seq1  GGTGAAGAAGTCAATACTCCAAGTATGGTGCCAGGTGATGTTTTGTTTAC  100
      |||||||||||||||||||| ||||||||| ||||||||||||||||   
seq2  GGTGAAGAAGTCAATACTCC-AGTATGGTG-CAGGTGATGTTTTGTT--A  91

seq1  CTCTTACCTTTCTGTCTTCTGTAGTTCTCTTTCTCTTATAGCTGAGGAAA  150
      |||||| ||||||||||||||||| |||||||||||||||||||| ||||
seq2  CTCTTA-CTTTCTGTCTTCTGTAG-TCTCTTTCTCTTATAGCTGA-GAAA  138

seq1  GTCTCCCACCCAGTAACACTGCCAGTCTACTGCACACAGAAATGCGCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCCACCCAGTAACACTGCCAGTCTACTGCACACAGAAATGCGCTCT  188

seq1  AGTTCCTAGCGAGCCCTGGTGGTCAGGGTGGGAAAATACACAAAGCTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTAGCGAGCCCTGGTGGTCAGGGTGGGAAAATACACAAAGCTTTG  238

seq1  GAAATGAGGATTTGGAAATAGGAGAGATTGAGCTTTCAGCATTAATAAG-  299
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GAAATGAGGATTTGGAAATAGGAGAGATTGAGCTTTCAGCATTAATAAGA  288

seq1  AAAATGGAGCCACCATTCAGTAAACTAAATTAGATTATGATAATCACAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGAGCCACCATTCAGTAAACTAAATTAGATTATGATAATCACAAA  338

seq1  ACCTTTCTCATAACTTCCTCCCTGGAGAGTCTGTCTGTCTATCTGTGTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCTCATAACTTCCTCCCTGGAGAGTCTGTCTGTCTATCTGTGTCT  388

seq1  GTCGGTCTCTGTTTGTCTCTCTCTTTCTCTCTCTTTTGCTCTGTGTGTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGTCTCTGTTTGTCTCTCTCTTTCTCTCTCTTTTGCTCTGTGTGTGT  438

seq1  GTGTTTGTGTGTGTGTGTATGTTTATGTATATATAGAGATATATAGTTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTGTGTGTGTGTATGTTTATGTATATATAGAGATATATAGTTAG  488

seq1  ATATATTGATAGAGATATGTGTGATATCACAGAAGATATTCACCAGTCAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGATAGAGATATGTGTGATATCACAGAAGATATTCACCAGTCAT  538

seq1  CAGGTCTTCCTCACTGAAGAACAAAGTTTTAAAGAAAGAAAATACAGACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTTCCTCACTGAAGAACAAAGTTTTAAAGAAAGAAAATACAGACA  588

seq1  ACAAAAGCACCTCTTGCTTTTGTTTACTTAATGTCAGACATAAGTAATCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCACCTCTTGCTTTTGTTTACTTAATGTCAGACATAAGTAATCC  638

seq1  TGATTCTGGAGAGTTCAAGACTAATCTGGATTATATATCAATATATAGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGGAGAGTTCAAGACTAATCTGGATTATATATCAATATATAGTT  688

seq1  GAGAATCGGAGACTCCCTTGTGTGCTATTTTCTTGCTGTGGTTTAGATGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCGGAGACTCCCTTGTGTGCTATTTTCTTGCTGTGGTTTAGATGC  738

seq1  AGGTGATTCCCATTTGTGTAGACCCATCTTTATTAACTTACACAGTAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGATTCCCATTTGTGTAGACCCATCTTTATTAACTTACACAGTAAAC  788

seq1  TTGGAAGAACCCTTGCTTTCGCTGAGAAGATATCTTTTGTTTAAATGATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGAACCCTTGCTTTCGCTGAGAAGATATCTTTTGTTTAAATGATC  838

seq1  ATATTAATGCTTGCACACAGAACTAAGCCATTTGATTGTATTACACTCAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAATGCTTGCACACAGAACTAAGCCATTTGATTGTATTACACTCAA  888

seq1  GTCATTTTAGGGAATTATCCCTTGTCTACCCTCTCACTCTCTAGAATTAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTAGGGAATTATCCCTTGTCTACCCTCTCACTCTCTAGAATTAG  938

seq1  TAAGCAGAATATCTGCTCAGAATATTAGACCAATGTTCCTTGAAATGTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGAATATCTGCTCAGAATATTAGACCAATGTTCCTTGAAATGTCA  988

seq1  TCCAACTATTTCTGATAAAGATATGCAAAGACATTGAGATTTAAAACGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTATTTCTGATAAAGATATGCAAAGACATTGAGATTTAAAACGGT  1038

seq1  CTTCAAAAGGATTGAAGAGTCCATACTTTAATAGCTAAAAAAACAAAAAC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAAGGATTGAAGAGTCCATACTTTAATAGCTAAAAAAACAAAAAC  1088

seq1  AAAAACAAACAAACAAACAAAAAATAAATAAATAAATTACATGAACCAGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAACAAACAAACAAAAAATAAATAAATAAATTACATGAACCAGA  1138

seq1  ATTC  1153
      ||||
seq2  ATTC  1142


seq1: chr9_5461191_5462221
seq2: B6Ng01-132P11.g_92_1111

seq1  AGCCCTCTATTGGACATAAGGTTGGCAAAGATCTTTACTGAATCTGCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCTATTGGACATAAGGTTGGCAAAGATCTTTACTGAATCTGCTGG  50

seq1  TTGCCATTTTTTCCTATTGACAGTGTCCTTTGCCTTACAGAACCTTTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATTTTTTCCTATTGACAGTGTCCTTTGCCTTACAGAACCTTTTCA  100

seq1  ATTTTATGAGGTCCCATTTGTCTATTATTGACTTTAGGGCAAAAGTCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGAGGTCCCATTTGTCTATTATTGACTTTAGGGCAAAAGTCATT  150

seq1  GGTGTTCTGTTCAGTAAAATATCCTCTGTGCCCATGTGTTCGAGGTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCTGTTCAGTAAAATATCCTCTGTGCCCATGTGTTCGAGGTTCTT  200

seq1  CCCTACTTTATTTTCTATTAGTTTCAGTTTATCTGGTTTTATGTGGATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTACTTTATTTTCTATTAGTTTCAGTTTATCTGGTTTTATGTGGATGT  250

seq1  CCTTAATCCACTTGAACTTCAACTTTGTATAGGAAGATGAGAATGGATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAATCCACTTGAACTTCAACTTTGTATAGGAAGATGAGAATGGATTT  300

seq1  GTGTGCAATCTTCTGCATGATAACTGCCAGTTGAACCAACATCATTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCAATCTTCTGCATGATAACTGCCAGTTGAACCAACATCATTTGTT  350

seq1  GAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCTTTGTCAAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCTTTGTCAAAAC  400

seq1  AAATATGTAGTTACCATACGTGTGTGGGTTCATTTCTGGGTCTTCAATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTAGTTACCATACGTGTGTGGGTTCATTTCTGGGTCTTCAATTC  450

seq1  TATTCCATTCTTTGTCACTTTTAATATTCTTTCTTTGTTCTGTAGATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCATTCTTTGTCACTTTTAATATTCTTTCTTTGTTCTGTAGATTGA  500

seq1  GAATTAAATATTAATAAAATAGTCCTTCAGTAAGTTTGCTGCCCACCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAATATTAATAAAATAGTCCTTCAGTAAGTTTGCTGCCCACCTCA  550

seq1  GAACTCTATGTTTCCGAATGAAAGACATACATACAGCTTTTATATAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTATGTTTCCGAATGAAAGACATACATACAGCTTTTATATAGTAA  600

seq1  TAGGCCTTACACAGCACAATAGCTGGACTTTTGCCTACCCCCATGCAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCCTTACACAGCACAATAGCTGGACTTTTGCCTACCCCCATGCAGTT  650

seq1  AATCTCTAGTTATTACTTACTAATTCTATGTTCTATCTTGGCTGTCCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTAGTTATTACTTACTAATTCTATGTTCTATCTTGGCTGTCCTGG  700

seq1  ACACAGTTGTCTAACCTTCTGGGCCGTGGTCATAAGCTCCTTCACACGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTTGTCTAACCTTCTGGGCCGTGGTCATAAGCTCCTTCACACGGA  750

seq1  GGCTGACTCCCTGTCCTGCCATCATCTCAGGTATTGTGGATCTCCTCTCT  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGCTGACTCCCTGTCCTGCCATCATCTCACGTATTGTGGATCTCCTCTCT  800

seq1  TCCACATTCTTCTGGCTTGGCTGAACCGCTTCTTCCTCTCTCCTCTGGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATTCTTCTGGCTTGGCTGAACCGCTTCTTCCTCTCTCCTCTGGGT  850

seq1  TCTCAGCCTAGGAATCCAAAAACCCCTCCTTTCTGTCAGTCATTTCCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCTAGGAATCCAAAAACCCCTCCTTTCTGTCAGTCATTTCCAGC  900

seq1  TATTGGCTGTTTACATCTTTATTTACCAATCAGATCCAACTGGGGAAAAG  950
      ||||||||| ||||||||||| ||||| ||||||||||||||||||||||
seq2  TATTGGCTG-TTACATCTTTA-TTACC-ATCAGATCCAACTGGGGAAAAG  947

seq1  TTCCCAGAAGCTAAGTACAGATGTTCTTGTGCAAACCATTTTTGGTGGAA  1000
      ||||||| |||| ||||||||||||| |||||||||||||||||||||| 
seq2  TTCCCAG-AGCT-AGTACAGATGTTC-TGTGCAAACCATTTTTGGTGGA-  993

seq1  ACATAATTAGCATTAGAATACAAGCAGCTCC  1031
        |  | ||||| |||||||| |||||||||
seq2  --ACTACTAGCA-TAGAATAC-AGCAGCTCC  1020


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